Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008926

Physical Location & Seq

Genomic Coordinates Forward (+)

24716205 .. 24717721

Gene Structure 1517 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG238600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAGCGCTATGAGATAGTGAAGGATATTGGTTCTGGGAACTTTGGTGTTGCAAAATTGGTGAAGGACAAATGGAGTGGTGAGCTCTATGCCGTCAAGTTCATTGAAAGAGGCCAGAAGCAAATTTGTCACAGAGATCTTAAACTGGAGAACACACTTCTAGATTCAAGCTCAGCTCCACGTCTCAAAATTTGTGATTTTGGTTATTCCAAGTCATCTGTGCTGCATTCACAACCCAAATCAACTGTTGGAACACCTGCCTACATTGCACCAGAAGTCCTGTCAAGAAAAGAGTATGATGGGAAGGTAATTTTGTTGGTTTCTTGTTCTGTTTTTAAGTTGGCCTTACTATTGTGGACCAAATTTTGGGTCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

125

Amino Acids

14.11

Weight (kDa)

9.28

Isoelectric Point (pI)

28.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	39 - 100	1.2e-06	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	40 - 103	2.8e-18	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40010
fragaria_vesca	FvH4_1g20310 FvH4_1g20310 FvH4_1g20310 FvH4_1g20310 FvH4_1g20310
malus_domestica	MD01G1035000.v1.1 MD15G1321000.v1.1
prunus_persica	Prupe.6G192200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112461
rosa_laevigata	RLG00000017982
rosa_multiflora	Rmu_sc0012231.1_g000005 Rmu_sc0036399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131410 Rroxscaffold_3G00222500
rosa_rugosa	Rorug02G0181000
rosa_samantha	Rh2AG234100 Rh2BG247600 Rh2CG238600 Rh2CG238700 Rh2DG241700
rosa_wichuraiana	Rw2G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
Acc36I	ACCTGC	1 cut(s)	265
AccB7I	CCANNNNNTGG	1 cut(s)	366
AcsI	RAATTY	3 cut(s)	123, 189, 362
AfeI	AGCGCT	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	366
AgsI	TTSAA	2 cut(s)	107, 168
AjiI	CACGTC	1 cut(s)	182
AluBI	AGCT	3 cut(s)	85, 171, 176
AluI	AGCT	3 cut(s)	85, 171, 176
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	188
Aor51HI	AGCGCT	1 cut(s)	8
AoxI	GGCC	2 cut(s)	112, 342
ApeKI	GCWGC	1 cut(s)	223
ApoI	RAATTY	3 cut(s)	123, 189, 362
ArsI	GACNNNNNNTTYG	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	357
AsuHPI	GGTGA	3 cut(s)	73, 92, 364
AvaII	GGWCC	1 cut(s)	357
BanII	GRGCYC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	210
BccI	CCATC	1 cut(s)	293
BceAI	ACGGC	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	161
BfoI	RGCGCY	1 cut(s)	10
BfuAI	ACCTGC	1 cut(s)	265
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	1 cut(s)	224
BlpI	GCTNAGC	1 cut(s)	172
BlsI	GCNGC	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	357
BmgBI	CACGTC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	357
BpmI	CTGGAG	1 cut(s)	167
Bpu1102I	GCTNAGC	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	366
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	366
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	210
BshFI	GGCC	2 cut(s)	114, 344
BsiHKAI	GWGCWC	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	366
BsmAI	GTCTC	1 cut(s)	188
BsmBI	CGTCTC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	114, 344
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	1 cut(s)	136
Bsp1720I	GCTNAGC	1 cut(s)	172
BspANI	GGCC	2 cut(s)	114, 344
BspCNI	CTCAG	1 cut(s)	185
BspMI	ACCTGC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	150
BssMI	GATC	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	247
BstDEI	CTNAG	1 cut(s)	172
BstEII	GGTNACC	1 cut(s)	370
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstPI	GGTNACC	1 cut(s)	370
BstV1I	GCAGC	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	114, 344
BtrI	CACGTC	1 cut(s)	182
BveI	ACCTGC	1 cut(s)	265
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	357
CspCI	CAANNNNNGTGG	2 cut(s)	58, 93
CviJI	RGCY	5 cut(s)	85, 114, 171, 176, 344
CviKI_1	RGCY	5 cut(s)	85, 114, 171, 176, 344
DdeI	CTNAG	1 cut(s)	172
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
Ecl136II	GAGCTC	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	357
Eco47III	AGCGCT	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	85
Eco91I	GGTNACC	1 cut(s)	370
EcoICRI	GAGCTC	1 cut(s)	85
EcoO65I	GGTNACC	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	87
Esp3I	CGTCTC	1 cut(s)	188
FaiI	YATR	3 cut(s)	12, 90, 297
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
Fnu4HI	GCNGC	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	224
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	1 cut(s)	224
GsuI	CTGGAG	1 cut(s)	167
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	2 cut(s)	114, 344
HhaI	GCGC	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	1 cut(s)	164
HphI	GGTGA	3 cut(s)	73, 92, 364
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188III	TCNNGA	2 cut(s)	161, 285
Hpy8I	GTNNAC	1 cut(s)	357
HpyAV	CCTTC	3 cut(s)	16, 58, 298
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	3 cut(s)	53, 226, 269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	1 cut(s)	172
HpySE526I	ACGT	1 cut(s)	181
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	136
LmnI	GCTCC	2 cut(s)	4, 181
LpnPI	CCDG	6 cut(s)	21, 128, 131, 270, 285, 293
Lsp1109I	GCAGC	1 cut(s)	210
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	2 cut(s)	128, 370
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	5 cut(s)	56, 123, 189, 309, 362
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	1 cut(s)	104
MseI	TTAA	2 cut(s)	141, 336
Mva1269I	GAATGC	1 cut(s)	226
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeII	GATC	1 cut(s)	136
NmuCI	GTSAC	2 cut(s)	128, 370
PaqCI	CACCTGC	1 cut(s)	265
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	164
PflMI	CCANNNNNTGG	1 cut(s)	366
PkrI	GCNGC	1 cut(s)	225
Psp124BI	GAGCTC	1 cut(s)	87
PspEI	GGTNACC	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	136
SacI	GAGCTC	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	141, 336
SatI	GCNGC	1 cut(s)	224
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	7 cut(s)	87, 173, 178, 184, 259, 309, 377
SinI	GGWCC	1 cut(s)	357
Sse9I	AATT	5 cut(s)	56, 123, 189, 309, 362
SspMI	CTAG	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	184
TasI	AATT	5 cut(s)	56, 123, 189, 309, 362
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	2 cut(s)	141, 336
Tru9I	TTAA	2 cut(s)	141, 336
TseFI	GTSAC	2 cut(s)	128, 370
TseI	GCWGC	1 cut(s)	223
Tsp45I	GTSAC	2 cut(s)	128, 370
TspDTI	ATGAA	1 cut(s)	91
Van91I	CCANNNNNTGG	1 cut(s)	366
VpaK11BI	GGWCC	1 cut(s)	357
XapI	RAATTY	3 cut(s)	123, 189, 362
XbaI	TCTAGA	1 cut(s)	160
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.