Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012231.1

Orthogroup ID

OG0008926

Physical Location & Seq

Genomic Coordinates Forward (+)

17093 .. 24894

Gene Structure 7802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012231.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2238 bp

atggagcgctatgagatagtgaaagatattggttctgggaactttggtgttgcaaaattggtgaaggacaaatgcagtggtgagctctatgccgtcaagttcattgaaagaggccagaagattgatgagcatgtacagagagagatcatgaaccacatgtcactgaagcatcccaatatcataagatttaaggaggtcttgttaacaccaaccgatttagcgattgtcatggaatatgcagccggaggagaactttttgaaagaatatgcaatgctggtagattcagtgaagacgaggccagatttttcttccagcagctgatttcaggagtcagttattgtcattcaatgcaaatttgtcacagagatcttaaactggagaacacacttctagattcaagctcagctccacgtctcaaaatttgtgattttggttattccaagtcatctgtgctgcattcacaacccaaatcaactgttggaacacctgcctacattgcaccagaagtcctgtcaagaaaagagtatgatgggaagatagcagatgtttggtcttgtggggttacattatatgtgatgctggttggtgcttatccctttgaagatccagaagatcccagaaatttcaggaaaacacttcagaaaattctgagcgtcagctattcaattcctgactatgtacgcgtttccagggaatgtagacatcttctttctcgaatttttgttgctaaccccgaaaagagaataacaatcccagagataaagcagcacccctggtttctaaaaaaattaccagaggaattcatggatgaagacagcctgcaaattggtgatgatcaaaaaaatgaaacctcccaaagtgttgaagaaatagtgtccattattcaagaggctcgaaaagctggtgatggcatcaaagttggtggacattttcttggaagtatggaccttgatgagatagatgatactgacatcgatgatatagaaacaagtggtgattttgaagaagaacaggccaatgaccaagtggcagacccacccagtggtaggttgaaattctatattgatggagcttttagagtagatagtggtaatggtgggattgttgtggtagaaatgttgcaggaagaagaacaggccaatgaccaagtggcagacccacccagtggtaggttgaaattctatattgatggagcttttagagtagatagtggtaatggtgggattgttgtggtagaaatgttgcaggaagaagaacaggccaatgaccaagtggcagacccacccagtggtaggttgaaattctatattgatggagcttttagagtagatagtggtaatggtgggattgttgtggtagaaatgttgcaggaagaagaacaggccaatgaccaagtggcagacccacccagtggtaggttgaaattctatattgatggagcttttagagtagatagtggtaatggtgggattgttgtggtagaaatgttgcaggaagaagaacaggccaatgaccaagtggcagacccacccagtggtaggttgaaattctatattgatggagcttttagagtagatagtggtaatggtgggattgttgtggtagaaatgttgcaggaagaagaacaggccaatgaccaagtggcagacccacccagtggtaggttgaaattctatattgatggagcttttagagtagatagtggtaatggtgggattgttgtggtagaaatgttgcaggaagaagaacaggccaatgaccaagtggcagacccacccagtggtaggttgaaattctatattgatggagcttttagagtagatagtggtaatggtgggattgttgtggtagaaatgttgcaggaagaagaacaggccaatgaccaagtggcagacccacccagtggtaggttgaaattctatattgatggagcttttagagtagatagtggtaatggtgggattgttgtggtagaaatgttgcaggaagaagaacaggccaatgaccaagtggcagacccacccagtggtaggttgaaattctatattgatggagcttttagagtagatagtggtaatggtgggattgttgtggtagaaatgttgcaggaagaagatcaggccaatgaccaagtggcagacccacccagtgataggttgaaaatcaatattgatggagcttttagagtagatagtggtaatggtgggattggtgtggtagaaatgatgcaggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

745

Amino Acids

82.36

Weight (kDa)

4.41

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40010
fragaria_vesca	FvH4_1g20310 FvH4_1g20310 FvH4_1g20310 FvH4_1g20310 FvH4_1g20310
malus_domestica	MD01G1035000.v1.1 MD15G1321000.v1.1
prunus_persica	Prupe.6G192200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112461
rosa_laevigata	RLG00000017982
rosa_multiflora	Rmu_sc0012231.1_g000005 Rmu_sc0036399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131410 Rroxscaffold_3G00222500
rosa_rugosa	Rorug02G0181000
rosa_samantha	Rh2AG234100 Rh2BG247600 Rh2CG238600 Rh2CG238700 Rh2DG241700
rosa_wichuraiana	Rw2G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	496
Acc36I	ACCTGC	1 cut(s)	496
AccB7I	CCANNNNNTGG	9 cut(s)	1043, 1166, 1289, 1412, 1535, 1658, 1781, 1904, 2027
AccI	GTMKAC	1 cut(s)	700
AccII	CGCG	1 cut(s)	684
AclWI	GGATC	2 cut(s)	599, 608
AcuI	CTGAAG	2 cut(s)	185, 623
AfaI	GTAC	2 cut(s)	135, 681
AfeI	AGCGCT	1 cut(s)	8
AflIII	ACRYGT	2 cut(s)	156, 682
AjiI	CACGTC	1 cut(s)	413
AjnI	CCWGG	2 cut(s)	689, 773
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	419
AlwI	GGATC	2 cut(s)	599, 608
AlwNI	CAGNNNCTG	1 cut(s)	319
Aor51HI	AGCGCT	1 cut(s)	8
ApeKI	GCWGC	4 cut(s)	239, 316, 454, 766
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	946
AsuHPI	GGTGA	5 cut(s)	73, 92, 842, 917, 1007
AvaII	GGWCC	1 cut(s)	946
BanII	GRGCYC	1 cut(s)	87
BbsI	GAAGAC	2 cut(s)	297, 819
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	4 cut(s)	251, 328, 441, 778
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	2 cut(s)	691, 775
BclI	TGATCA	1 cut(s)	835
BcoDI	GTCTC	1 cut(s)	419
BfaI	CTAG	1 cut(s)	392
BfoI	RGCGCY	1 cut(s)	10
BfuAI	ACCTGC	1 cut(s)	496
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	4 cut(s)	240, 317, 455, 767
BlpI	GCTNAGC	1 cut(s)	403
BlsI	GCNGC	4 cut(s)	241, 318, 456, 768
Bme1390I	CCNGG	2 cut(s)	691, 775
Bme18I	GGWCC	1 cut(s)	946
BmgBI	CACGTC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	946
BmrFI	CCNGG	2 cut(s)	691, 775
BmsI	GCATC	4 cut(s)	178, 567, 921, 2217
BpiI	GAAGAC	2 cut(s)	297, 819
BpmI	CTGGAG	1 cut(s)	398
Bpu1102I	GCTNAGC	1 cut(s)	403
Bsa29I	ATCGAT	1 cut(s)	975
BsaJI	CCNNGG	2 cut(s)	690, 773
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bse3DI	GCAATG	2 cut(s)	277, 495
BseBI	CCWGG	2 cut(s)	691, 775
BseCI	ATCGAT	1 cut(s)	975
BseDI	CCNNGG	2 cut(s)	690, 773
BseGI	GGATG	2 cut(s)	169, 814
BseMI	GCAATG	2 cut(s)	277, 495
BseMII	CTCAG	2 cut(s)	417, 641
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	4 cut(s)	251, 328, 441, 778
Bsh1236I	CGCG	1 cut(s)	684
BshVI	ATCGAT	1 cut(s)	975
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	419
BsmBI	CGTCTC	1 cut(s)	419
BsmI	GAATGC	1 cut(s)	457
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	133
Bsp143I	GATC	6 cut(s)	144, 367, 604, 613, 835, 2116
Bsp1720I	GCTNAGC	1 cut(s)	403
BspCNI	CTCAG	2 cut(s)	416, 642
BspDI	ATCGAT	1 cut(s)	975
BspFNI	CGCG	1 cut(s)	684
BspHI	TCATGA	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	496
BspPI	GGATC	2 cut(s)	599, 608
BsrDI	GCAATG	2 cut(s)	277, 495
BsrGI	TGTACA	1 cut(s)	133
BssECI	CCNNGG	2 cut(s)	690, 773
BssMI	GATC	6 cut(s)	144, 367, 604, 613, 835, 2116
Bst2UI	CCWGG	2 cut(s)	691, 775
Bst4CI	ACNGT	1 cut(s)	478
BstAUI	TGTACA	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	821
BstDEI	CTNAG	2 cut(s)	403, 650
BstF5I	GGATG	2 cut(s)	169, 814
BstFNI	CGCG	1 cut(s)	684
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	6 cut(s)	147, 370, 607, 616, 838, 2119
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	6 cut(s)	144, 367, 604, 613, 835, 2116
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 899
BstNI	CCWGG	2 cut(s)	691, 775
BstNSI	RCATGY	2 cut(s)	134, 160
BstSCI	CCNGG	2 cut(s)	689, 773
BstUI	CGCG	1 cut(s)	684
BstV1I	GCAGC	4 cut(s)	251, 328, 441, 778
BstV2I	GAAGAC	2 cut(s)	297, 819
BstX2I	RGATCY	3 cut(s)	367, 604, 613
BstYI	RGATCY	3 cut(s)	367, 604, 613
Bsu15I	ATCGAT	1 cut(s)	975
BsuTUI	ATCGAT	1 cut(s)	975
BtrI	CACGTC	1 cut(s)	413
BtsCI	GGATG	2 cut(s)	169, 814
BtsI	GCAGTG	1 cut(s)	82
BveI	ACCTGC	1 cut(s)	496
Cac8I	GCNNGC	1 cut(s)	821
CaiI	CAGNNNCTG	1 cut(s)	319
CciI	TCATGA	1 cut(s)	147
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	946
ClaI	ATCGAT	1 cut(s)	975
CseI	GACGC	1 cut(s)	643
Csp6I	GTAC	2 cut(s)	134, 680
CspCI	CAANNNNNGTGG	4 cut(s)	58, 93, 904, 939
CviAII	CATG	5 cut(s)	131, 148, 157, 229, 805
CviQI	GTAC	2 cut(s)	134, 680
DdeI	CTNAG	2 cut(s)	403, 650
DpnI	GATC	6 cut(s)	146, 369, 606, 615, 837, 2118
DpnII	GATC	6 cut(s)	144, 367, 604, 613, 835, 2116
Ecl136II	GAGCTC	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	946
Eco47III	AGCGCT	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	85
Eco57I	CTGAAG	2 cut(s)	185, 623
EcoICRI	GAGCTC	1 cut(s)	85
EcoRI	GAATTC	1 cut(s)	800
EcoRII	CCWGG	2 cut(s)	689, 773
EcoT38I	GRGCYC	1 cut(s)	87
Esp3I	CGTCTC	1 cut(s)	419
FaeI	CATG	5 cut(s)	134, 151, 160, 232, 808
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FatI	CATG	5 cut(s)	130, 147, 156, 228, 804
FbaI	TGATCA	1 cut(s)	835
FblI	GTMKAC	1 cut(s)	700
Fnu4HI	GCNGC	4 cut(s)	240, 317, 455, 767
FokI	GGATG	2 cut(s)	156, 821
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	4 cut(s)	240, 317, 455, 767
FspBI	CTAG	1 cut(s)	392
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	4 cut(s)	240, 317, 455, 767
GsuI	CTGGAG	1 cut(s)	398
HaeII	RGCGCY	1 cut(s)	10
HapII	CCGG	1 cut(s)	243
HgaI	GACGC	1 cut(s)	643
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	5 cut(s)	134, 151, 160, 232, 808
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HinfI	GANTC	3 cut(s)	282, 330, 395
HpaI	GTTAAC	1 cut(s)	204
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	5 cut(s)	73, 92, 842, 917, 1007
Hpy166II	GTNNAC	3 cut(s)	204, 701, 926
Hpy188I	TCNGA	2 cut(s)	642, 651
Hpy188III	TCNNGA	9 cut(s)	148, 327, 392, 516, 608, 628, 671, 714, 887
Hpy8I	GTNNAC	3 cut(s)	204, 701, 926
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4IV	ACGT	1 cut(s)	412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 899
HpyF3I	CTNAG	2 cut(s)	403, 650
HpySE526I	ACGT	1 cut(s)	412
Hsp92II	CATG	5 cut(s)	134, 151, 160, 232, 808
HspAI	GCGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	835
KspAI	GTTAAC	1 cut(s)	204
Kzo9I	GATC	6 cut(s)	144, 367, 604, 613, 835, 2116
Lsp1109I	GCAGC	4 cut(s)	251, 328, 441, 778
LweI	GCATC	4 cut(s)	178, 567, 921, 2217
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	1 cut(s)	412
MaeIII	GTNAC	3 cut(s)	159, 359, 562
MalI	GATC	6 cut(s)	146, 369, 606, 615, 837, 2118
MboI	GATC	6 cut(s)	144, 367, 604, 613, 835, 2116
MflI	RGATCY	3 cut(s)	367, 604, 613
MhlI	GDGCHC	1 cut(s)	87
MluI	ACGCGT	1 cut(s)	682
MlyI	GAGTC	1 cut(s)	339
MmeI	TCCRAC	1 cut(s)	460
MnlI	CCTC	7 cut(s)	104, 187, 239, 289, 790, 862, 883
MseI	TTAA	3 cut(s)	189, 203, 372
MspA1I	CMGCKG	1 cut(s)	319
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	2 cut(s)	691, 775
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	2 cut(s)	691, 775
MvnI	CGCG	1 cut(s)	684
MwoI	GCNNNNNNNGC	2 cut(s)	497, 899
NdeII	GATC	6 cut(s)	144, 367, 604, 613, 835, 2116
NlaIII	CATG	5 cut(s)	134, 151, 160, 232, 808
NmuCI	GTSAC	2 cut(s)	159, 359
NspI	RCATGY	2 cut(s)	134, 160
PagI	TCATGA	1 cut(s)	147
PaqCI	CACCTGC	1 cut(s)	496
PciI	ACATGT	1 cut(s)	156
PctI	GAATGC	1 cut(s)	457
PfeI	GAWTC	2 cut(s)	282, 395
PflMI	CCANNNNNTGG	9 cut(s)	1043, 1166, 1289, 1412, 1535, 1658, 1781, 1904, 2027
PkrI	GCNGC	4 cut(s)	241, 318, 456, 768
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
PscI	ACATGT	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	689, 773
PspGI	CCWGG	2 cut(s)	689, 773
PspPI	GGNCC	1 cut(s)	946
PstNI	CAGNNNCTG	1 cut(s)	319
PsuI	RGATCY	3 cut(s)	367, 604, 613
PvuII	CAGCTG	1 cut(s)	319
RsaI	GTAC	2 cut(s)	135, 681
RsaNI	GTAC	2 cut(s)	134, 680
SacI	GAGCTC	1 cut(s)	87
SaqAI	TTAA	3 cut(s)	189, 203, 372
SatI	GCNGC	4 cut(s)	240, 317, 455, 767
Sau3AI	GATC	6 cut(s)	144, 367, 604, 613, 835, 2116
Sau96I	GGNCC	1 cut(s)	946
SchI	GAGTC	1 cut(s)	339
ScrFI	CCNGG	2 cut(s)	691, 775
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	4 cut(s)	178, 567, 921, 2217
SinI	GGWCC	1 cut(s)	946
SspI	AATATT	1 cut(s)	2170
SspMI	CTAG	1 cut(s)	392
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	689, 773
TaaI	ACNGT	1 cut(s)	478
TaiI	ACGT	1 cut(s)	415
TaqI	TCGA	3 cut(s)	715, 895, 975
TatI	WGTACW	1 cut(s)	133
TfiI	GAWTC	2 cut(s)	282, 395
Tru1I	TTAA	3 cut(s)	189, 203, 372
Tru9I	TTAA	3 cut(s)	189, 203, 372
TseFI	GTSAC	2 cut(s)	159, 359
TseI	GCWGC	4 cut(s)	239, 316, 454, 766
Tsp45I	GTSAC	2 cut(s)	159, 359
TspDTI	ATGAA	5 cut(s)	91, 164, 793, 825, 861
Van91I	CCANNNNNTGG	9 cut(s)	1043, 1166, 1289, 1412, 1535, 1658, 1781, 1904, 2027
VpaK11BI	GGWCC	1 cut(s)	946
XbaI	TCTAGA	1 cut(s)	391
XceI	RCATGY	2 cut(s)	134, 160
XmiI	GTMKAC	1 cut(s)	700
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.