Domain of unknown function (DUF3453)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G01400 AT5G01400 AT5G01400 |
| fragaria_vesca | FvH4_6g11410 |
| malus_domestica | MD08G1209300.v1.1 MD12G1166800.v1.1 |
| prunus_persica | Prupe.6G277600_v2.0.a1 |
| pyrus_communis | pycom04g13880 pycom04g13890 pycom12g15880 |
| rosa_chinensis | RchiOBHm_Chr3g0463071 |
| rosa_laevigata | RLG00000024813 |
| rosa_multiflora | Rmu_co8095628.1_g000001 Rmu_sc0000766.1_g000036 Rmu_sc0008124.1_g000011 Rmu_sc0008124.1_g000012 Rmu_sc0008124.1_g000013 |
| rosa_roxburghii | Rroxscaffold_6G00416980 |
| rosa_rugosa | Rorug03G0061200 Rorug03G0061200 |
| rosa_samantha | Rh3AG119400 Rh3BG124000 Rh3CG125800 Rh3DG124900 |
| rosa_wichuraiana | Rw3G010100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 3937 |
| Acc16I | TGCGCA | 2 cut(s) | 2012, 3345 |
| Acc36I | ACCTGC | 2 cut(s) | 295, 1255 |
| AccB1I | GGYRCC | 2 cut(s) | 648, 1412 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 622, 2987 |
| AccI | GTMKAC | 3 cut(s) | 518, 1962, 3704 |
| AccII | CGCG | 1 cut(s) | 38 |
| AccIII | TCCGGA | 1 cut(s) | 2493 |
| AclWI | GGATC | 8 cut(s) | 764, 777, 1075, 1315, 2682, 2885, 3229, 4256 |
| AcoI | YGGCCR | 2 cut(s) | 297, 4183 |
| AcsI | RAATTY | 8 cut(s) | 40, 491, 744, 1886, 2621, 2829, 3188, 3405 |
| AcuI | CTGAAG | 7 cut(s) | 1620, 2085, 2304, 2751, 2796, 3033, 3276 |
| AcyI | GRCGYC | 1 cut(s) | 2738 |
| AdeI | CACNNNGTG | 1 cut(s) | 2987 |
| AfaI | GTAC | 6 cut(s) | 853, 2815, 2938, 3433, 3852, 4180 |
| AfeI | AGCGCT | 1 cut(s) | 504 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 530, 622, 2402, 2572, 2987, 3031 |
| AflII | CTTAAG | 2 cut(s) | 1048, 3643 |
| AflIII | ACRYGT | 1 cut(s) | 1434 |
| AgeI | ACCGGT | 1 cut(s) | 876 |
| AjnI | CCWGG | 8 cut(s) | 299, 1618, 1723, 2395, 2485, 2568, 3480, 3879 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1287, 1319, 1381, 1413 |
| Alw21I | GWGCWC | 4 cut(s) | 892, 2136, 3652, 4231 |
| AlwI | GGATC | 8 cut(s) | 764, 777, 1075, 1315, 2682, 2885, 3229, 4256 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1955, 2774 |
| Ama87I | CYCGRG | 2 cut(s) | 1188, 4222 |
| Aor13HI | TCCGGA | 1 cut(s) | 2493 |
| Aor51HI | AGCGCT | 1 cut(s) | 504 |
| ApaI | GGGCCC | 1 cut(s) | 3039 |
| ApoI | RAATTY | 8 cut(s) | 40, 491, 744, 1886, 2621, 2829, 3188, 3405 |
| AseI | ATTAAT | 1 cut(s) | 239 |
| AsiGI | ACCGGT | 1 cut(s) | 876 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2547 |
| AspLEI | GCGC | 6 cut(s) | 90, 99, 485, 505, 2013, 3346 |
| AsuC2I | CCSGG | 2 cut(s) | 101, 3638 |
| AsuHPI | GGTGA | 9 cut(s) | 140, 224, 1304, 1438, 2417, 3019, 3181, 3869, 4348 |
| AvaI | CYCGRG | 2 cut(s) | 1188, 4222 |
| AvaII | GGWCC | 6 cut(s) | 874, 1211, 1244, 1579, 3397, 3930 |
| BaeGI | GKGCMC | 2 cut(s) | 258, 3039 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 978, 978, 1011, 1011 |
| BalI | TGGCCA | 2 cut(s) | 299, 4185 |
| BamHI | GGATCC | 1 cut(s) | 769 |
| BanI | GGYRCC | 2 cut(s) | 648, 1412 |
| BanII | GRGCYC | 4 cut(s) | 1765, 2948, 3039, 3652 |
| BauI | CACGAG | 1 cut(s) | 3207 |
| BbsI | GAAGAC | 1 cut(s) | 830 |
| Bbv12I | GWGCWC | 4 cut(s) | 892, 2136, 3652, 4231 |
| BccI | CCATC | 9 cut(s) | 1100, 1166, 1357, 1403, 1483, 1745, 2665, 3259, 3290 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 46, 80, 178, 212 |
| BciT130I | CCWGG | 8 cut(s) | 301, 1620, 1725, 2397, 2487, 2570, 3482, 3881 |
| BclI | TGATCA | 1 cut(s) | 637 |
| BcnI | CCSGG | 2 cut(s) | 101, 3638 |
| BfaI | CTAG | 4 cut(s) | 375, 1259, 2861, 2930 |
| BfmI | CTRYAG | 4 cut(s) | 654, 801, 3215, 3593 |
| BfoI | RGCGCY | 1 cut(s) | 506 |
| BfrI | CTTAAG | 2 cut(s) | 1048, 3643 |
| BfuAI | ACCTGC | 2 cut(s) | 295, 1255 |
| BglII | AGATCT | 4 cut(s) | 31, 934, 1061, 4118 |
| BlpI | GCTNAGC | 1 cut(s) | 1251 |
| Bme18I | GGWCC | 6 cut(s) | 874, 1211, 1244, 1579, 3397, 3930 |
| BmeT110I | CYCGRG | 2 cut(s) | 1188, 4222 |
| BmrI | ACTGGG | 3 cut(s) | 3233, 3623, 3882 |
| BmsI | GCATC | 5 cut(s) | 1087, 1444, 1594, 2894, 3313 |
| BmuI | ACTGGG | 3 cut(s) | 3233, 3623, 3882 |
| BpiI | GAAGAC | 1 cut(s) | 830 |
| BpmI | CTGGAG | 2 cut(s) | 3503, 4215 |
| Bpu10I | CCTNAGC | 2 cut(s) | 644, 776 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1251 |
| BpuEI | CTTGAG | 4 cut(s) | 2430, 3723, 4194, 4251 |
| BpuMI | CCSGG | 2 cut(s) | 101, 3638 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1066, 2679 |
| BsaHI | GRCGYC | 1 cut(s) | 2738 |
| BsaI | GGTCTC | 4 cut(s) | 1183, 2427, 2456, 2476 |
| BsaJI | CCNNGG | 9 cut(s) | 132, 565, 990, 1187, 1278, 2114, 2817, 3030, 3698 |
| BsaWI | WCCGGW | 4 cut(s) | 871, 876, 1208, 2493 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1663, 1693, 1752, 1782, 2424, 2454 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 530, 622, 2402, 2572, 2987, 3031 |
| Bse118I | RCCGGY | 5 cut(s) | 876, 3377, 3981, 4026, 4071 |
| Bse3DI | GCAATG | 2 cut(s) | 309, 3951 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1066, 2679 |
| BseAI | TCCGGA | 1 cut(s) | 2493 |
| BseBI | CCWGG | 8 cut(s) | 301, 1620, 1725, 2397, 2487, 2570, 3482, 3881 |
| BseDI | CCNNGG | 9 cut(s) | 132, 565, 990, 1187, 1278, 2114, 2817, 3030, 3698 |
| BseGI | GGATG | 6 cut(s) | 436, 574, 856, 2948, 3103, 3477 |
| BseJI | GATNNNNATC | 2 cut(s) | 1066, 2679 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 530, 622, 2402, 2572, 2987, 3031 |
| BseMI | GCAATG | 2 cut(s) | 309, 3951 |
| BseRI | GAGGAG | 2 cut(s) | 513, 1242 |
| BseSI | GKGCMC | 2 cut(s) | 258, 3039 |
| BseYI | CCCAGC | 1 cut(s) | 3286 |
| BsgI | GTGCAG | 1 cut(s) | 852 |
| Bsh1236I | CGCG | 1 cut(s) | 38 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1209 |
| BshNI | GGYRCC | 2 cut(s) | 648, 1412 |
| BshTI | ACCGGT | 1 cut(s) | 876 |
| BsiEI | CGRYCG | 1 cut(s) | 1209 |
| BsiHKAI | GWGCWC | 4 cut(s) | 892, 2136, 3652, 4231 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1188, 4222 |
| BslFI | GGGAC | 8 cut(s) | 2178, 3713, 3906, 3943, 3951, 3996, 4041, 4086 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 530, 622, 2402, 2572, 2987, 3031 |
| BsmBI | CGTCTC | 2 cut(s) | 2729, 3503 |
| BsmFI | GGGAC | 8 cut(s) | 2178, 3713, 3906, 3943, 3951, 3996, 4041, 4086 |
| BsmI | GAATGC | 4 cut(s) | 370, 960, 1511, 2887 |
| Bso31I | GGTCTC | 4 cut(s) | 1183, 2427, 2456, 2476 |
| BsoBI | CYCGRG | 2 cut(s) | 1188, 4222 |
| Bsp120I | GGGCCC | 1 cut(s) | 3035 |
| Bsp1286I | GDGCHC | 8 cut(s) | 258, 892, 1765, 2136, 2948, 3039, 3652, 4231 |
| Bsp13I | TCCGGA | 1 cut(s) | 2493 |
| Bsp1407I | TGTACA | 1 cut(s) | 851 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1251 |
| Bsp68I | TCGCGA | 1 cut(s) | 38 |
| BspEI | TCCGGA | 1 cut(s) | 2493 |
| BspFNI | CGCG | 1 cut(s) | 38 |
| BspHI | TCATGA | 2 cut(s) | 526, 2158 |
| BspMAI | CTGCAG | 3 cut(s) | 658, 805, 3219 |
| BspMI | ACCTGC | 2 cut(s) | 295, 1255 |
| BspPI | GGATC | 8 cut(s) | 764, 777, 1075, 1315, 2682, 2885, 3229, 4256 |
| BspT107I | GGYRCC | 2 cut(s) | 648, 1412 |
| BspTI | CTTAAG | 2 cut(s) | 1048, 3643 |
| BspTNI | GGTCTC | 4 cut(s) | 1183, 2427, 2456, 2476 |
| BsrDI | GCAATG | 2 cut(s) | 309, 3951 |
| BsrFI | RCCGGY | 5 cut(s) | 876, 3377, 3981, 4026, 4071 |
| BsrGI | TGTACA | 1 cut(s) | 851 |
| BssAI | RCCGGY | 5 cut(s) | 876, 3377, 3981, 4026, 4071 |
| BssECI | CCNNGG | 9 cut(s) | 132, 565, 990, 1187, 1278, 2114, 2817, 3030, 3698 |
| BssNAI | GTATAC | 1 cut(s) | 519 |
| BssNI | GRCGYC | 1 cut(s) | 2738 |
| BssSI | CACGAG | 1 cut(s) | 3207 |
| BssT1I | CCWWGG | 5 cut(s) | 990, 1278, 2114, 2817, 3698 |
| Bst1107I | GTATAC | 1 cut(s) | 519 |
| Bst2BI | CACGAG | 1 cut(s) | 3207 |
| Bst2UI | CCWGG | 8 cut(s) | 301, 1620, 1725, 2397, 2487, 2570, 3482, 3881 |
| Bst6I | CTCTTC | 6 cut(s) | 999, 1971, 2076, 2239, 2538, 4392 |
| BstACI | GRCGYC | 1 cut(s) | 2738 |
| BstAFI | CTTAAG | 2 cut(s) | 1048, 3643 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 85 |
| BstAUI | TGTACA | 1 cut(s) | 851 |
| BstDSI | CCRYGG | 2 cut(s) | 132, 565 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 528, 3029 |
| BstF5I | GGATG | 6 cut(s) | 436, 574, 856, 2948, 3103, 3477 |
| BstFNI | CGCG | 1 cut(s) | 38 |
| BstH2I | RGCGCY | 1 cut(s) | 506 |
| BstHHI | GCGC | 6 cut(s) | 90, 99, 485, 505, 2013, 3346 |
| BstMCI | CGRYCG | 1 cut(s) | 1209 |
| BstNI | CCWGG | 8 cut(s) | 301, 1620, 1725, 2397, 2487, 2570, 3482, 3881 |
| BstNSI | RCATGY | 3 cut(s) | 1438, 3330, 3668 |
| BstSFI | CTRYAG | 4 cut(s) | 654, 801, 3215, 3593 |
| BstSLI | GKGCMC | 2 cut(s) | 258, 3039 |
| BstUI | CGCG | 1 cut(s) | 38 |
| BstV2I | GAAGAC | 1 cut(s) | 830 |
| BstX2I | RGATCY | 9 cut(s) | 31, 769, 934, 1061, 1307, 2674, 2890, 4118, 4261 |
| BstYI | RGATCY | 9 cut(s) | 31, 769, 934, 1061, 1307, 2674, 2890, 4118, 4261 |
| BstZ17I | GTATAC | 1 cut(s) | 519 |
| BtgI | CCRYGG | 2 cut(s) | 132, 565 |
| BtsCI | GGATG | 6 cut(s) | 436, 574, 856, 2948, 3103, 3477 |
| BtsI | GCAGTG | 2 cut(s) | 1456, 3410 |
| BtuMI | TCGCGA | 1 cut(s) | 38 |
| BveI | ACCTGC | 2 cut(s) | 295, 1255 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1955, 2774 |
| CciI | TCATGA | 2 cut(s) | 526, 2158 |
| CfoI | GCGC | 6 cut(s) | 90, 99, 485, 505, 2013, 3346 |
| Cfr10I | RCCGGY | 5 cut(s) | 876, 3377, 3981, 4026, 4071 |
| CpoI | CGGWCCG | 1 cut(s) | 874 |
| CseI | GACGC | 3 cut(s) | 2238, 2746, 4260 |
| Csp6I | GTAC | 6 cut(s) | 852, 2814, 2937, 3432, 3851, 4179 |
| CspAI | ACCGGT | 1 cut(s) | 876 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1851, 1886 |
| CspI | CGGWCCG | 1 cut(s) | 874 |
| CviQI | GTAC | 6 cut(s) | 852, 2814, 2937, 3432, 3851, 4179 |
| DraIII | CACNNNGTG | 1 cut(s) | 2987 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3937 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3937 |
| EaeI | YGGCCR | 2 cut(s) | 297, 4183 |
| Eam1104I | CTCTTC | 6 cut(s) | 999, 1971, 2076, 2239, 2538, 4392 |
| EarI | CTCTTC | 6 cut(s) | 999, 1971, 2076, 2239, 2538, 4392 |
| EciI | GGCGGA | 3 cut(s) | 34, 1355, 2555 |
| Ecl136II | GAGCTC | 1 cut(s) | 3650 |
| Eco130I | CCWWGG | 5 cut(s) | 990, 1278, 2114, 2817, 3698 |
| Eco24I | GRGCYC | 4 cut(s) | 1765, 2948, 3039, 3652 |
| Eco31I | GGTCTC | 4 cut(s) | 1183, 2427, 2456, 2476 |
| Eco32I | GATATC | 1 cut(s) | 1947 |
| Eco47I | GGWCC | 6 cut(s) | 874, 1211, 1244, 1579, 3397, 3930 |
| Eco47III | AGCGCT | 1 cut(s) | 504 |
| Eco53kI | GAGCTC | 1 cut(s) | 3650 |
| Eco57I | CTGAAG | 7 cut(s) | 1620, 2085, 2304, 2751, 2796, 3033, 3276 |
| Eco88I | CYCGRG | 2 cut(s) | 1188, 4222 |
| EcoICRI | GAGCTC | 1 cut(s) | 3650 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 528, 3029 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3035 |
| EcoRI | GAATTC | 2 cut(s) | 40, 744 |
| EcoRII | CCWGG | 8 cut(s) | 299, 1618, 1723, 2395, 2485, 2568, 3480, 3879 |
| EcoRV | GATATC | 1 cut(s) | 1947 |
| EcoT14I | CCWWGG | 5 cut(s) | 990, 1278, 2114, 2817, 3698 |
| EcoT22I | ATGCAT | 3 cut(s) | 1377, 2887, 3328 |
| EcoT38I | GRGCYC | 4 cut(s) | 1765, 2948, 3039, 3652 |
| ErhI | CCWWGG | 5 cut(s) | 990, 1278, 2114, 2817, 3698 |
| Esp3I | CGTCTC | 2 cut(s) | 2729, 3503 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2284, 2316, 3186, 3218 |
| FaqI | GGGAC | 8 cut(s) | 2178, 3713, 3906, 3943, 3951, 3996, 4041, 4086 |
| FauI | CCCGC | 3 cut(s) | 868, 1480, 2175 |
| FauNDI | CATATG | 2 cut(s) | 2257, 3165 |
| FbaI | TGATCA | 1 cut(s) | 637 |
| FblI | GTMKAC | 3 cut(s) | 518, 1962, 3704 |
| FokI | GGATG | 6 cut(s) | 443, 561, 843, 2935, 3110, 3464 |
| FriOI | GRGCYC | 4 cut(s) | 1765, 2948, 3039, 3652 |
| FspBI | CTAG | 4 cut(s) | 375, 1259, 2861, 2930 |
| FspI | TGCGCA | 2 cut(s) | 2012, 3345 |
| GlaI | GCGC | 6 cut(s) | 89, 98, 484, 504, 2012, 3345 |
| GsaI | CCCAGC | 1 cut(s) | 3290 |
| GsuI | CTGGAG | 2 cut(s) | 3503, 4215 |
| HaeII | RGCGCY | 1 cut(s) | 506 |
| HgaI | GACGC | 3 cut(s) | 2238, 2746, 4260 |
| HhaI | GCGC | 6 cut(s) | 90, 99, 485, 505, 2013, 3346 |
| Hin1I | GRCGYC | 1 cut(s) | 2738 |
| Hin6I | GCGC | 6 cut(s) | 88, 97, 483, 503, 2011, 3344 |
| HinP1I | GCGC | 6 cut(s) | 88, 97, 483, 503, 2011, 3344 |
| HincII | GTYRAC | 4 cut(s) | 882, 1506, 1963, 2175 |
| HindII | GTYRAC | 4 cut(s) | 882, 1506, 1963, 2175 |
| HindIII | AAGCTT | 2 cut(s) | 778, 3258 |
| HphI | GGTGA | 9 cut(s) | 140, 224, 1304, 1438, 2417, 3019, 3181, 3869, 4348 |
| Hpy99I | CGWCG | 2 cut(s) | 61, 682 |
| HpyAV | CCTTC | 6 cut(s) | 524, 899, 1140, 2109, 3011, 3054 |
| HpyCH4IV | ACGT | 3 cut(s) | 724, 1114, 2136 |
| HpySE526I | ACGT | 3 cut(s) | 724, 1114, 2136 |
| Hsp92I | GRCGYC | 1 cut(s) | 2738 |
| HspAI | GCGC | 6 cut(s) | 88, 97, 483, 503, 2011, 3344 |
| Kpn2I | TCCGGA | 1 cut(s) | 2493 |
| Ksp22I | TGATCA | 1 cut(s) | 637 |
| LmnI | GCTCC | 6 cut(s) | 320, 1760, 2131, 2466, 3655, 4234 |
| LweI | GCATC | 5 cut(s) | 1087, 1444, 1594, 2894, 3313 |
| MaeI | CTAG | 4 cut(s) | 375, 1259, 2861, 2930 |
| MaeII | ACGT | 3 cut(s) | 724, 1114, 2136 |
| MaeIII | GTNAC | 9 cut(s) | 1043, 1768, 2440, 2770, 2793, 2993, 3316, 4158, 4336 |
| MfeI | CAATTG | 3 cut(s) | 603, 1302, 1521 |
| MflI | RGATCY | 9 cut(s) | 31, 769, 934, 1061, 1307, 2674, 2890, 4118, 4261 |
| MhlI | GDGCHC | 8 cut(s) | 258, 892, 1765, 2136, 2948, 3039, 3652, 4231 |
| MlsI | TGGCCA | 2 cut(s) | 299, 4185 |
| MluNI | TGGCCA | 2 cut(s) | 299, 4185 |
| MlyI | GAGTC | 8 cut(s) | 1933, 3793, 3958, 4003, 4048, 4093, 4207, 4214 |
| MmeI | TCCRAC | 4 cut(s) | 1860, 2358, 3450, 4197 |
| Mox20I | TGGCCA | 2 cut(s) | 299, 4185 |
| Mph1103I | ATGCAT | 3 cut(s) | 1377, 2887, 3328 |
| MroI | TCCGGA | 1 cut(s) | 2493 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2547 |
| MscI | TGGCCA | 2 cut(s) | 299, 4185 |
| MslI | CAYNNNNRTG | 2 cut(s) | 375, 409 |
| Msp20I | TGGCCA | 2 cut(s) | 299, 4185 |
| MspA1I | CMGCKG | 3 cut(s) | 293, 863, 1598 |
| MspCI | CTTAAG | 2 cut(s) | 1048, 3643 |
| MunI | CAATTG | 3 cut(s) | 603, 1302, 1521 |
| Mva1269I | GAATGC | 4 cut(s) | 370, 960, 1511, 2887 |
| MvaI | CCWGG | 8 cut(s) | 301, 1620, 1725, 2397, 2487, 2570, 3482, 3881 |
| MvnI | CGCG | 1 cut(s) | 38 |
| NciI | CCSGG | 2 cut(s) | 101, 3638 |
| NdeI | CATATG | 2 cut(s) | 2257, 3165 |
| NmeAIII | GCCGAG | 1 cut(s) | 226 |
| NmuCI | GTSAC | 5 cut(s) | 2793, 2993, 3316, 4158, 4336 |
| NruI | TCGCGA | 1 cut(s) | 38 |
| NsbI | TGCGCA | 2 cut(s) | 2012, 3345 |
| NsiI | ATGCAT | 3 cut(s) | 1377, 2887, 3328 |
| NspI | RCATGY | 3 cut(s) | 1438, 3330, 3668 |
| PacI | TTAATTAA | 1 cut(s) | 267 |
| PaeI | GCATGC | 1 cut(s) | 3330 |
| PaeR7I | CTCGAG | 1 cut(s) | 4222 |
| PagI | TCATGA | 2 cut(s) | 526, 2158 |
| PciI | ACATGT | 1 cut(s) | 1434 |
| PctI | GAATGC | 4 cut(s) | 370, 960, 1511, 2887 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2547 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 622, 2987 |
| PfoI | TCCNGGA | 2 cut(s) | 2395, 3480 |
| PinAI | ACCGGT | 1 cut(s) | 876 |
| PleI | GAGTC | 8 cut(s) | 1932, 3792, 3957, 4002, 4047, 4092, 4206, 4214 |
| PpsI | GAGTC | 8 cut(s) | 1932, 3792, 3957, 4002, 4047, 4092, 4206, 4214 |
| PscI | ACATGT | 1 cut(s) | 1434 |
| PshBI | ATTAAT | 1 cut(s) | 239 |
| Psp124BI | GAGCTC | 1 cut(s) | 3652 |
| Psp6I | CCWGG | 8 cut(s) | 299, 1618, 1723, 2395, 2485, 2568, 3480, 3879 |
| PspFI | CCCAGC | 1 cut(s) | 3286 |
| PspGI | CCWGG | 8 cut(s) | 299, 1618, 1723, 2395, 2485, 2568, 3480, 3879 |
| PspOMI | GGGCCC | 1 cut(s) | 3035 |
| PspXI | VCTCGAGB | 1 cut(s) | 4222 |
| PstI | CTGCAG | 3 cut(s) | 658, 805, 3219 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1955, 2774 |
| PsuI | RGATCY | 9 cut(s) | 31, 769, 934, 1061, 1307, 2674, 2890, 4118, 4261 |
| PvuII | CAGCTG | 2 cut(s) | 293, 1598 |
| RruI | TCGCGA | 1 cut(s) | 38 |
| RsaI | GTAC | 6 cut(s) | 853, 2815, 2938, 3433, 3852, 4180 |
| RsaNI | GTAC | 6 cut(s) | 852, 2814, 2937, 3432, 3851, 4179 |
| RseI | CAYNNNNRTG | 2 cut(s) | 375, 409 |
| Rsr2I | CGGWCCG | 1 cut(s) | 874 |
| RsrII | CGGWCCG | 1 cut(s) | 874 |
| SacI | GAGCTC | 1 cut(s) | 3652 |
| SalI | GTCGAC | 1 cut(s) | 1961 |
| SchI | GAGTC | 8 cut(s) | 1933, 3793, 3958, 4003, 4048, 4093, 4207, 4214 |
| SduI | GDGCHC | 8 cut(s) | 258, 892, 1765, 2136, 2948, 3039, 3652, 4231 |
| SfaNI | GCATC | 5 cut(s) | 1087, 1444, 1594, 2894, 3313 |
| SfcI | CTRYAG | 4 cut(s) | 654, 801, 3215, 3593 |
| Sfr274I | CTCGAG | 1 cut(s) | 4222 |
| SinI | GGWCC | 6 cut(s) | 874, 1211, 1244, 1579, 3397, 3930 |
| SlaI | CTCGAG | 1 cut(s) | 4222 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 375, 409 |
| SmlI | CTYRAG | 7 cut(s) | 1048, 2445, 3643, 3738, 4209, 4222, 4266 |
| SmoI | CTYRAG | 7 cut(s) | 1048, 2445, 3643, 3738, 4209, 4222, 4266 |
| SphI | GCATGC | 1 cut(s) | 3330 |
| SspI | AATATT | 3 cut(s) | 1081, 1381, 2124 |
| SspMI | CTAG | 4 cut(s) | 375, 1259, 2861, 2930 |
| SstI | GAGCTC | 1 cut(s) | 3652 |
| StyI | CCWWGG | 5 cut(s) | 990, 1278, 2114, 2817, 3698 |
| TaiI | ACGT | 3 cut(s) | 727, 1117, 2139 |
| TaqI | TCGA | 9 cut(s) | 156, 345, 677, 1205, 1848, 1962, 2845, 4223, 4347 |
| TatI | WGTACW | 1 cut(s) | 851 |
| TseFI | GTSAC | 5 cut(s) | 2793, 2993, 3316, 4158, 4336 |
| Tsp45I | GTSAC | 5 cut(s) | 2793, 2993, 3316, 4158, 4336 |
| TspGWI | ACGGA | 8 cut(s) | 74, 112, 149, 323, 554, 969, 1170, 3085 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 622, 2987 |
| Vha464I | CTTAAG | 2 cut(s) | 1048, 3643 |
| VpaK11BI | GGWCC | 6 cut(s) | 874, 1211, 1244, 1579, 3397, 3930 |
| VspI | ATTAAT | 1 cut(s) | 239 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 528, 3029 |
| XapI | RAATTY | 8 cut(s) | 40, 491, 744, 1886, 2621, 2829, 3188, 3405 |
| XceI | RCATGY | 3 cut(s) | 1438, 3330, 3668 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 619, 997 |
| XhoI | CTCGAG | 1 cut(s) | 4222 |
| XmiI | GTMKAC | 3 cut(s) | 518, 1962, 3704 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2547 |
| XspI | CTAG | 4 cut(s) | 375, 1259, 2861, 2930 |
| Zsp2I | ATGCAT | 3 cut(s) | 1377, 2887, 3328 |