Domain of unknown function (DUF3453)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G01400 AT5G01400 AT5G01400 |
| fragaria_vesca | FvH4_6g11410 |
| malus_domestica | MD08G1209300.v1.1 MD12G1166800.v1.1 |
| prunus_persica | Prupe.6G277600_v2.0.a1 |
| pyrus_communis | pycom04g13880 pycom04g13890 pycom12g15880 |
| rosa_chinensis | RchiOBHm_Chr3g0463071 |
| rosa_laevigata | RLG00000024813 |
| rosa_multiflora | Rmu_co8095628.1_g000001 Rmu_sc0000766.1_g000036 Rmu_sc0008124.1_g000011 Rmu_sc0008124.1_g000012 Rmu_sc0008124.1_g000013 |
| rosa_roxburghii | Rroxscaffold_6G00416980 |
| rosa_rugosa | Rorug03G0061200 Rorug03G0061200 |
| rosa_samantha | Rh3AG119400 Rh3BG124000 Rh3CG125800 Rh3DG124900 |
| rosa_wichuraiana | Rw3G010100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 902 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 68 |
| Acc36I | ACCTGC | 4 cut(s) | 787, 902, 1624, 3133 |
| AccB1I | GGYRCC | 1 cut(s) | 2053 |
| AccI | GTMKAC | 1 cut(s) | 388 |
| AccII | CGCG | 1 cut(s) | 1448 |
| AccIII | TCCGGA | 1 cut(s) | 207 |
| AclWI | GGATC | 8 cut(s) | 542, 815, 2547, 2800, 3104, 3361, 3410, 3613 |
| AcsI | RAATTY | 8 cut(s) | 212, 512, 596, 646, 1219, 2160, 2461, 3432 |
| AcuI | CTGAAG | 6 cut(s) | 167, 365, 3245, 3408, 3701, 3710 |
| AcyI | GRCGYC | 2 cut(s) | 1152, 2054 |
| AdeI | CACNNNGTG | 2 cut(s) | 592, 1184 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 58, 485, 3119 |
| AflII | CTTAAG | 1 cut(s) | 1544 |
| AflIII | ACRYGT | 2 cut(s) | 850, 1416 |
| AgeI | ACCGGT | 2 cut(s) | 102, 192 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 88, 2553 |
| AhlI | ACTAGT | 1 cut(s) | 3061 |
| AjnI | CCWGG | 6 cut(s) | 324, 478, 912, 1441, 2216, 2241 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 513, 545, 1332, 1364 |
| Alw21I | GWGCWC | 4 cut(s) | 162, 865, 1120, 3689 |
| Alw26I | GTCTC | 6 cut(s) | 132, 720, 859, 1236, 2381, 2561 |
| Alw44I | GTGCAC | 1 cut(s) | 3685 |
| AlwI | GGATC | 8 cut(s) | 542, 815, 2547, 2800, 3104, 3361, 3410, 3613 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1832, 2786 |
| Ama87I | CYCGRG | 2 cut(s) | 1500, 1790 |
| Aor13HI | TCCGGA | 1 cut(s) | 207 |
| AoxI | GGCC | 3 cut(s) | 327, 987, 2588 |
| ApaLI | GTGCAC | 1 cut(s) | 3685 |
| ApoI | RAATTY | 8 cut(s) | 212, 512, 596, 646, 1219, 2160, 2461, 3432 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3692, 3724 |
| AseI | ATTAAT | 4 cut(s) | 288, 840, 1011, 2139 |
| AsiGI | ACCGGT | 2 cut(s) | 102, 192 |
| AspLEI | GCGC | 3 cut(s) | 1322, 1448, 2056 |
| AspS9I | GGNCC | 3 cut(s) | 1289, 2589, 3368 |
| AsuC2I | CCSGG | 3 cut(s) | 1623, 1791, 1792 |
| AsuNHI | GCTAGC | 2 cut(s) | 1393, 3800 |
| AvaI | CYCGRG | 2 cut(s) | 1500, 1790 |
| AvaII | GGWCC | 2 cut(s) | 1289, 3368 |
| BaeGI | GKGCMC | 1 cut(s) | 3689 |
| BanI | GGYRCC | 1 cut(s) | 2053 |
| BanII | GRGCYC | 5 cut(s) | 162, 570, 680, 1068, 1797 |
| BauI | CACGAG | 3 cut(s) | 2261, 2270, 3084 |
| Bbv12I | GWGCWC | 4 cut(s) | 162, 865, 1120, 3689 |
| BbvCI | CCTCAGC | 2 cut(s) | 1140, 1398 |
| BceAI | ACGGC | 2 cut(s) | 53, 262 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1830, 1864, 2589, 2623 |
| BciT130I | CCWGG | 6 cut(s) | 326, 480, 914, 1443, 2218, 2243 |
| BciVI | GTATCC | 1 cut(s) | 840 |
| BclI | TGATCA | 1 cut(s) | 688 |
| BcnI | CCSGG | 3 cut(s) | 1623, 1791, 1792 |
| BcoDI | GTCTC | 6 cut(s) | 132, 720, 859, 1236, 2381, 2561 |
| BcuI | ACTAGT | 1 cut(s) | 3061 |
| BfmI | CTRYAG | 2 cut(s) | 1935, 3347 |
| BfoI | RGCGCY | 1 cut(s) | 2057 |
| BfrI | CTTAAG | 1 cut(s) | 1544 |
| BfuAI | ACCTGC | 4 cut(s) | 787, 902, 1624, 3133 |
| BfuI | GTATCC | 1 cut(s) | 840 |
| BglII | AGATCT | 1 cut(s) | 3088 |
| BlpI | GCTNAGC | 1 cut(s) | 1955 |
| BmcAI | AGTACT | 2 cut(s) | 1552, 2563 |
| Bme1390I | CCNGG | 9 cut(s) | 326, 480, 914, 1443, 1623, 1791, 1792, 2218, 2243 |
| Bme18I | GGWCC | 2 cut(s) | 1289, 3368 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 88, 2553 |
| BmeT110I | CYCGRG | 2 cut(s) | 1500, 1790 |
| BmgT120I | GGNCC | 3 cut(s) | 1289, 2589, 3368 |
| BmrFI | CCNGG | 9 cut(s) | 326, 480, 914, 1443, 1623, 1791, 1792, 2218, 2243 |
| BmsI | GCATC | 9 cut(s) | 1135, 1570, 1850, 1858, 2755, 2773, 3026, 3129, 3892 |
| BmtI | GCTAGC | 2 cut(s) | 1397, 3804 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 114, 146, 446, 478 |
| BpmI | CTGGAG | 5 cut(s) | 1029, 2666, 2832, 3366, 3720 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1140, 1332, 1398 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1955 |
| BpuEI | CTTGAG | 5 cut(s) | 437, 1218, 1357, 1796, 2535 |
| BpuMI | CCSGG | 3 cut(s) | 1623, 1791, 1792 |
| BsaAI | YACGTR | 2 cut(s) | 253, 851 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1584, 3401 |
| BsaHI | GRCGYC | 2 cut(s) | 1152, 2054 |
| BsaI | GGTCTC | 2 cut(s) | 132, 2561 |
| BsaJI | CCNNGG | 8 cut(s) | 913, 926, 1622, 1790, 2202, 2216, 3406, 3830 |
| BsaWI | WCCGGW | 5 cut(s) | 102, 192, 207, 968, 1120 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1063, 1093, 1446, 1476, 2474, 2504 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 58, 485, 3119 |
| Bse118I | RCCGGY | 4 cut(s) | 102, 192, 310, 1487 |
| Bse1I | ACTGG | 6 cut(s) | 998, 1046, 1872, 2057, 3318, 3603 |
| Bse3DI | GCAATG | 3 cut(s) | 680, 2706, 3469 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1584, 3401 |
| BseAI | TCCGGA | 1 cut(s) | 207 |
| BseBI | CCWGG | 6 cut(s) | 326, 480, 914, 1443, 2218, 2243 |
| BseDI | CCNNGG | 8 cut(s) | 913, 926, 1622, 1790, 2202, 2216, 3406, 3830 |
| BseGI | GGATG | 8 cut(s) | 441, 625, 1150, 1841, 1867, 2064, 3356, 3813 |
| BseJI | GATNNNNATC | 2 cut(s) | 1584, 3401 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 58, 485, 3119 |
| BseMI | GCAATG | 3 cut(s) | 680, 2706, 3469 |
| BseNI | ACTGG | 6 cut(s) | 998, 1046, 1872, 2057, 3318, 3603 |
| BseRI | GAGGAG | 6 cut(s) | 152, 467, 1076, 1964, 1980, 2866 |
| BseSI | GKGCMC | 1 cut(s) | 3689 |
| BseYI | CCCAGC | 2 cut(s) | 571, 3741 |
| BsgI | GTGCAG | 6 cut(s) | 233, 906, 1316, 1554, 2652, 3579 |
| Bsh1236I | CGCG | 1 cut(s) | 1448 |
| Bsh1285I | CGRYCG | 2 cut(s) | 103, 193 |
| BshFI | GGCC | 3 cut(s) | 329, 989, 2590 |
| BshNI | GGYRCC | 1 cut(s) | 2053 |
| BshTI | ACCGGT | 2 cut(s) | 102, 192 |
| BsiEI | CGRYCG | 2 cut(s) | 103, 193 |
| BsiHKAI | GWGCWC | 4 cut(s) | 162, 865, 1120, 3689 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1500, 1790 |
| BslFI | GGGAC | 4 cut(s) | 186, 2008, 2280, 3181 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 58, 485, 3119 |
| BsmAI | GTCTC | 6 cut(s) | 132, 720, 859, 1236, 2381, 2561 |
| BsmBI | CGTCTC | 1 cut(s) | 1236 |
| BsmFI | GGGAC | 4 cut(s) | 186, 2008, 2280, 3181 |
| BsnI | GGCC | 3 cut(s) | 329, 989, 2590 |
| Bso31I | GGTCTC | 2 cut(s) | 132, 2561 |
| BsoBI | CYCGRG | 2 cut(s) | 1500, 1790 |
| Bsp1286I | GDGCHC | 8 cut(s) | 162, 570, 680, 865, 1068, 1120, 1797, 3689 |
| Bsp13I | TCCGGA | 1 cut(s) | 207 |
| Bsp1407I | TGTACA | 2 cut(s) | 2179, 2966 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1955 |
| Bsp19I | CCATGG | 1 cut(s) | 3406 |
| BspANI | GGCC | 3 cut(s) | 329, 989, 2590 |
| BspEI | TCCGGA | 1 cut(s) | 207 |
| BspFNI | CGCG | 1 cut(s) | 1448 |
| BspHI | TCATGA | 1 cut(s) | 577 |
| BspMAI | CTGCAG | 1 cut(s) | 1939 |
| BspMI | ACCTGC | 4 cut(s) | 787, 902, 1624, 3133 |
| BspOI | GCTAGC | 2 cut(s) | 1397, 3804 |
| BspPI | GGATC | 8 cut(s) | 542, 815, 2547, 2800, 3104, 3361, 3410, 3613 |
| BspQI | GCTCTTC | 1 cut(s) | 1623 |
| BspT107I | GGYRCC | 1 cut(s) | 2053 |
| BspTI | CTTAAG | 1 cut(s) | 1544 |
| BspTNI | GGTCTC | 2 cut(s) | 132, 2561 |
| BsrDI | GCAATG | 3 cut(s) | 680, 2706, 3469 |
| BsrFI | RCCGGY | 4 cut(s) | 102, 192, 310, 1487 |
| BsrGI | TGTACA | 2 cut(s) | 2179, 2966 |
| BsrI | ACTGG | 6 cut(s) | 998, 1046, 1872, 2057, 3318, 3603 |
| BssAI | RCCGGY | 4 cut(s) | 102, 192, 310, 1487 |
| BssECI | CCNNGG | 8 cut(s) | 913, 926, 1622, 1790, 2202, 2216, 3406, 3830 |
| BssNI | GRCGYC | 2 cut(s) | 1152, 2054 |
| BssSI | CACGAG | 3 cut(s) | 2261, 2270, 3084 |
| BssT1I | CCWWGG | 3 cut(s) | 926, 2202, 3406 |
| Bst2BI | CACGAG | 3 cut(s) | 2261, 2270, 3084 |
| Bst2UI | CCWGG | 6 cut(s) | 326, 480, 914, 1443, 2218, 2243 |
| Bst6I | CTCTTC | 7 cut(s) | 179, 1053, 1623, 1749, 1852, 2073, 3378 |
| BstACI | GRCGYC | 2 cut(s) | 1152, 2054 |
| BstAFI | CTTAAG | 1 cut(s) | 1544 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 869, 1328, 3148, 3464 |
| BstAUI | TGTACA | 2 cut(s) | 2179, 2966 |
| BstBAI | YACGTR | 2 cut(s) | 253, 851 |
| BstDSI | CCRYGG | 1 cut(s) | 3406 |
| BstF5I | GGATG | 8 cut(s) | 441, 625, 1150, 1841, 1867, 2064, 3356, 3813 |
| BstFNI | CGCG | 1 cut(s) | 1448 |
| BstH2I | RGCGCY | 1 cut(s) | 2057 |
| BstHHI | GCGC | 3 cut(s) | 1322, 1448, 2056 |
| BstMAI | GTCTC | 6 cut(s) | 132, 720, 859, 1236, 2381, 2561 |
| BstMCI | CGRYCG | 2 cut(s) | 103, 193 |
| BstNI | CCWGG | 6 cut(s) | 326, 480, 914, 1443, 2218, 2243 |
| BstNSI | RCATGY | 6 cut(s) | 1393, 1420, 1665, 2491, 3462, 3471 |
| BstSCI | CCNGG | 9 cut(s) | 324, 478, 912, 1441, 1621, 1789, 1790, 2216, 2241 |
| BstSFI | CTRYAG | 2 cut(s) | 1935, 3347 |
| BstSLI | GKGCMC | 1 cut(s) | 3689 |
| BstUI | CGCG | 1 cut(s) | 1448 |
| BstX2I | RGATCY | 3 cut(s) | 3088, 3109, 3618 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3666 |
| BstYI | RGATCY | 3 cut(s) | 3088, 3109, 3618 |
| BsuI | GTATCC | 1 cut(s) | 840 |
| BsuRI | GGCC | 3 cut(s) | 329, 989, 2590 |
| BtgI | CCRYGG | 1 cut(s) | 3406 |
| BtsCI | GGATG | 8 cut(s) | 441, 625, 1150, 1841, 1867, 2064, 3356, 3813 |
| BtsI | GCAGTG | 1 cut(s) | 2859 |
| BtsIMutI | CAGTG | 6 cut(s) | 342, 506, 1879, 2859, 3311, 3596 |
| BveI | ACCTGC | 4 cut(s) | 787, 902, 1624, 3133 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1832, 2786 |
| CciI | TCATGA | 1 cut(s) | 577 |
| CfoI | GCGC | 3 cut(s) | 1322, 1448, 2056 |
| Cfr10I | RCCGGY | 4 cut(s) | 102, 192, 310, 1487 |
| Cfr13I | GGNCC | 3 cut(s) | 1289, 2589, 3368 |
| Cfr9I | CCCGGG | 1 cut(s) | 1790 |
| CseI | GACGC | 3 cut(s) | 1160, 1218, 3464 |
| CspAI | ACCGGT | 2 cut(s) | 102, 192 |
| DinI | GGCGCC | 1 cut(s) | 2055 |
| DraIII | CACNNNGTG | 2 cut(s) | 592, 1184 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 68 |
| DriI | GACNNNNNGTC | 2 cut(s) | 88, 2553 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 68 |
| Eam1104I | CTCTTC | 7 cut(s) | 179, 1053, 1623, 1749, 1852, 2073, 3378 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 88, 2553 |
| EarI | CTCTTC | 7 cut(s) | 179, 1053, 1623, 1749, 1852, 2073, 3378 |
| EciI | GGCGGA | 2 cut(s) | 55, 504 |
| Ecl136II | GAGCTC | 1 cut(s) | 160 |
| Eco130I | CCWWGG | 3 cut(s) | 926, 2202, 3406 |
| Eco24I | GRGCYC | 5 cut(s) | 162, 570, 680, 1068, 1797 |
| Eco31I | GGTCTC | 2 cut(s) | 132, 2561 |
| Eco32I | GATATC | 1 cut(s) | 1995 |
| Eco47I | GGWCC | 2 cut(s) | 1289, 3368 |
| Eco53kI | GAGCTC | 1 cut(s) | 160 |
| Eco57I | CTGAAG | 6 cut(s) | 167, 365, 3245, 3408, 3701, 3710 |
| Eco88I | CYCGRG | 2 cut(s) | 1500, 1790 |
| EcoICRI | GAGCTC | 1 cut(s) | 160 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2589 |
| EcoRI | GAATTC | 2 cut(s) | 2160, 3432 |
| EcoRII | CCWGG | 6 cut(s) | 324, 478, 912, 1441, 2216, 2241 |
| EcoRV | GATATC | 1 cut(s) | 1995 |
| EcoT14I | CCWWGG | 3 cut(s) | 926, 2202, 3406 |
| EcoT22I | ATGCAT | 3 cut(s) | 3019, 3469, 3757 |
| EcoT38I | GRGCYC | 5 cut(s) | 162, 570, 680, 1068, 1797 |
| EgeI | GGCGCC | 1 cut(s) | 2055 |
| EheI | GGCGCC | 1 cut(s) | 2055 |
| ErhI | CCWWGG | 3 cut(s) | 926, 2202, 3406 |
| Esp3I | CGTCTC | 1 cut(s) | 1236 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 363, 395 |
| FaqI | GGGAC | 4 cut(s) | 186, 2008, 2280, 3181 |
| FauI | CCCGC | 4 cut(s) | 59, 151, 176, 2120 |
| FbaI | TGATCA | 1 cut(s) | 688 |
| FblI | GTMKAC | 1 cut(s) | 388 |
| FokI | GGATG | 8 cut(s) | 448, 612, 1157, 1828, 1874, 2051, 3343, 3800 |
| FriOI | GRGCYC | 5 cut(s) | 162, 570, 680, 1068, 1797 |
| GlaI | GCGC | 3 cut(s) | 1321, 1447, 2055 |
| GsaI | CCCAGC | 2 cut(s) | 575, 3745 |
| GsuI | CTGGAG | 5 cut(s) | 1029, 2666, 2832, 3366, 3720 |
| HaeII | RGCGCY | 1 cut(s) | 2057 |
| HaeIII | GGCC | 3 cut(s) | 329, 989, 2590 |
| HgaI | GACGC | 3 cut(s) | 1160, 1218, 3464 |
| HhaI | GCGC | 3 cut(s) | 1322, 1448, 2056 |
| Hin1I | GRCGYC | 2 cut(s) | 1152, 2054 |
| Hin6I | GCGC | 3 cut(s) | 1320, 1446, 2054 |
| HinP1I | GCGC | 3 cut(s) | 1320, 1446, 2054 |
| HincII | GTYRAC | 4 cut(s) | 108, 954, 1984, 2277 |
| HindII | GTYRAC | 4 cut(s) | 108, 954, 1984, 2277 |
| HindIII | AAGCTT | 1 cut(s) | 2687 |
| HpaI | GTTAAC | 1 cut(s) | 108 |
| Hpy99I | CGWCG | 3 cut(s) | 74, 77, 283 |
| HpyCH4IV | ACGT | 5 cut(s) | 252, 850, 1165, 2279, 2671 |
| HpySE526I | ACGT | 5 cut(s) | 252, 850, 1165, 2279, 2671 |
| Hsp92I | GRCGYC | 2 cut(s) | 1152, 2054 |
| HspAI | GCGC | 3 cut(s) | 1320, 1446, 2054 |
| KasI | GGCGCC | 1 cut(s) | 2053 |
| Kpn2I | TCCGGA | 1 cut(s) | 207 |
| KroI | GCCGGC | 1 cut(s) | 1487 |
| KroNI | GCCGGC | 1 cut(s) | 1489 |
| Ksp22I | TGATCA | 1 cut(s) | 688 |
| KspAI | GTTAAC | 1 cut(s) | 108 |
| LguI | GCTCTTC | 1 cut(s) | 1623 |
| LweI | GCATC | 9 cut(s) | 1135, 1570, 1850, 1858, 2755, 2773, 3026, 3129, 3892 |
| MaeII | ACGT | 5 cut(s) | 252, 850, 1165, 2279, 2671 |
| MaeIII | GTNAC | 7 cut(s) | 722, 807, 1091, 2545, 3081, 3448, 3928 |
| MfeI | CAATTG | 7 cut(s) | 113, 762, 1641, 2733, 2838, 2922, 3524 |
| MflI | RGATCY | 3 cut(s) | 3088, 3109, 3618 |
| MhlI | GDGCHC | 8 cut(s) | 162, 570, 680, 865, 1068, 1120, 1797, 3689 |
| Mly113I | GGCGCC | 1 cut(s) | 2054 |
| MlyI | GAGTC | 7 cut(s) | 56, 428, 1039, 1512, 1906, 2383, 2542 |
| MmeI | TCCRAC | 3 cut(s) | 60, 213, 622 |
| Mph1103I | ATGCAT | 3 cut(s) | 3019, 3469, 3757 |
| MroI | TCCGGA | 1 cut(s) | 207 |
| MroNI | GCCGGC | 1 cut(s) | 1487 |
| MslI | CAYNNNNRTG | 4 cut(s) | 14, 224, 396, 737 |
| MspA1I | CMGCKG | 1 cut(s) | 3386 |
| MspCI | CTTAAG | 1 cut(s) | 1544 |
| MspR9I | CCNGG | 9 cut(s) | 326, 480, 914, 1443, 1623, 1791, 1792, 2218, 2243 |
| MunI | CAATTG | 7 cut(s) | 113, 762, 1641, 2733, 2838, 2922, 3524 |
| MvaI | CCWGG | 6 cut(s) | 326, 480, 914, 1443, 2218, 2243 |
| MvnI | CGCG | 1 cut(s) | 1448 |
| NaeI | GCCGGC | 1 cut(s) | 1489 |
| NarI | GGCGCC | 1 cut(s) | 2054 |
| NciI | CCSGG | 3 cut(s) | 1623, 1791, 1792 |
| NcoI | CCATGG | 1 cut(s) | 3406 |
| NgoMIV | GCCGGC | 1 cut(s) | 1487 |
| NheI | GCTAGC | 2 cut(s) | 1393, 3800 |
| NmeAIII | GCCGAG | 1 cut(s) | 210 |
| NmuCI | GTSAC | 4 cut(s) | 2545, 3081, 3448, 3928 |
| NsiI | ATGCAT | 3 cut(s) | 3019, 3469, 3757 |
| NspI | RCATGY | 6 cut(s) | 1393, 1420, 1665, 2491, 3462, 3471 |
| PaeI | GCATGC | 1 cut(s) | 3462 |
| PagI | TCATGA | 1 cut(s) | 577 |
| PaqCI | CACCTGC | 1 cut(s) | 902 |
| PciI | ACATGT | 1 cut(s) | 1416 |
| PciSI | GCTCTTC | 1 cut(s) | 1623 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 78, 2268 |
| PdiI | GCCGGC | 1 cut(s) | 1489 |
| PinAI | ACCGGT | 2 cut(s) | 102, 192 |
| PleI | GAGTC | 7 cut(s) | 56, 427, 1038, 1511, 1905, 2383, 2542 |
| PluTI | GGCGCC | 1 cut(s) | 2057 |
| PpsI | GAGTC | 7 cut(s) | 56, 427, 1038, 1511, 1905, 2383, 2542 |
| Ppu21I | YACGTR | 2 cut(s) | 253, 851 |
| PscI | ACATGT | 1 cut(s) | 1416 |
| PshBI | ATTAAT | 4 cut(s) | 288, 840, 1011, 2139 |
| Psp124BI | GAGCTC | 1 cut(s) | 162 |
| Psp6I | CCWGG | 6 cut(s) | 324, 478, 912, 1441, 2216, 2241 |
| PspFI | CCCAGC | 2 cut(s) | 571, 3741 |
| PspGI | CCWGG | 6 cut(s) | 324, 478, 912, 1441, 2216, 2241 |
| PspPI | GGNCC | 3 cut(s) | 1289, 2589, 3368 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3061, 3093 |
| PstI | CTGCAG | 1 cut(s) | 1939 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1832, 2786 |
| PsuI | RGATCY | 3 cut(s) | 3088, 3109, 3618 |
| PvuII | CAGCTG | 1 cut(s) | 3386 |
| RseI | CAYNNNNRTG | 4 cut(s) | 14, 224, 396, 737 |
| SacI | GAGCTC | 1 cut(s) | 162 |
| SapI | GCTCTTC | 1 cut(s) | 1623 |
| Sau96I | GGNCC | 3 cut(s) | 1289, 2589, 3368 |
| ScaI | AGTACT | 2 cut(s) | 1552, 2563 |
| SchI | GAGTC | 7 cut(s) | 56, 428, 1039, 1512, 1906, 2383, 2542 |
| ScrFI | CCNGG | 9 cut(s) | 326, 480, 914, 1443, 1623, 1791, 1792, 2218, 2243 |
| SduI | GDGCHC | 8 cut(s) | 162, 570, 680, 865, 1068, 1120, 1797, 3689 |
| SfaNI | GCATC | 9 cut(s) | 1135, 1570, 1850, 1858, 2755, 2773, 3026, 3129, 3892 |
| SfcI | CTRYAG | 2 cut(s) | 1935, 3347 |
| SfoI | GGCGCC | 1 cut(s) | 2055 |
| SinI | GGWCC | 2 cut(s) | 1289, 3368 |
| SmaI | CCCGGG | 1 cut(s) | 1792 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 14, 224, 396, 737 |
| SmlI | CTYRAG | 6 cut(s) | 416, 1233, 1372, 1544, 1775, 2550 |
| SmoI | CTYRAG | 6 cut(s) | 416, 1233, 1372, 1544, 1775, 2550 |
| SpeI | ACTAGT | 1 cut(s) | 3061 |
| SphI | GCATGC | 1 cut(s) | 3462 |
| SspDI | GGCGCC | 1 cut(s) | 2053 |
| SspI | AATATT | 2 cut(s) | 1009, 2997 |
| SstI | GAGCTC | 1 cut(s) | 162 |
| StyD4I | CCNGG | 9 cut(s) | 324, 478, 912, 1441, 1621, 1789, 1790, 2216, 2241 |
| StyI | CCWWGG | 3 cut(s) | 926, 2202, 3406 |
| TaiI | ACGT | 5 cut(s) | 255, 853, 1168, 2282, 2674 |
| TaqI | TCGA | 9 cut(s) | 99, 177, 464, 1797, 1850, 2121, 2164, 3474, 3628 |
| TatI | WGTACW | 7 cut(s) | 905, 1550, 1664, 1918, 2179, 2561, 2966 |
| TauI | GCSGC | 3 cut(s) | 80, 342, 489 |
| TscAI | CASTG | 6 cut(s) | 349, 513, 1879, 2859, 3318, 3603 |
| TseFI | GTSAC | 4 cut(s) | 2545, 3081, 3448, 3928 |
| Tsp45I | GTSAC | 4 cut(s) | 2545, 3081, 3448, 3928 |
| TspGWI | ACGGA | 2 cut(s) | 1737, 2685 |
| TspMI | CCCGGG | 1 cut(s) | 1790 |
| TspRI | CASTG | 6 cut(s) | 349, 513, 1879, 2859, 3318, 3603 |
| Vha464I | CTTAAG | 1 cut(s) | 1544 |
| VneI | GTGCAC | 1 cut(s) | 3685 |
| VpaK11BI | GGWCC | 2 cut(s) | 1289, 3368 |
| VspI | ATTAAT | 4 cut(s) | 288, 840, 1011, 2139 |
| XapI | RAATTY | 8 cut(s) | 212, 512, 596, 646, 1219, 2160, 2461, 3432 |
| XbaI | TCTAGA | 1 cut(s) | 1576 |
| XceI | RCATGY | 6 cut(s) | 1393, 1420, 1665, 2491, 3462, 3471 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1094 |
| XmaI | CCCGGG | 1 cut(s) | 1790 |
| XmiI | GTMKAC | 1 cut(s) | 388 |
| ZrmI | AGTACT | 2 cut(s) | 1552, 2563 |
| Zsp2I | ATGCAT | 3 cut(s) | 3019, 3469, 3757 |