Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008124.1

Orthogroup ID

OG0007393

Physical Location & Seq

Genomic Coordinates Forward (+)

76299 .. 78005

Gene Structure 1707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008124.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ctgaatcaattggttgagcagattccccttcctttactgttcatgcgtacagtattgcaagctattggtgcttttcctgcactggtggattttataatggagatcctctctcgacttgtgagcaaacagatatggaaatacccaaagttgtgggtgggattcctgaagtgcgcattgttgacaaagcctcagtcatttggcgtgttgcttcagctacccccagcacagctagaaaatgcattgaagagaactgcagctctgaaagcacccttggttgcccatgctagccaaccagatatccgatcttcacttccaaggtctatattggtagttttgggaattgtttcagactctcaggcacaaacgagtcaggcaaataccggagatgcaagcaactcagacaaggaggcagtcacggagaaatcgaaagaagaatcatctagtgcttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04530 map03015 map04530

Pfam Domains

Protein Families

DUF3453 Symplekin_C

Protein Analysis

150

Amino Acids

16.29

Weight (kDa)

9.01

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01400 AT5G01400 AT5G01400
fragaria_vesca	FvH4_6g11410
malus_domestica	MD08G1209300.v1.1 MD12G1166800.v1.1
prunus_persica	Prupe.6G277600_v2.0.a1
pyrus_communis	pycom04g13880 pycom04g13890 pycom12g15880
rosa_chinensis	RchiOBHm_Chr3g0463071
rosa_laevigata	RLG00000024813
rosa_multiflora	Rmu_co8095628.1_g000001 Rmu_sc0000766.1_g000036 Rmu_sc0008124.1_g000011 Rmu_sc0008124.1_g000012 Rmu_sc0008124.1_g000013
rosa_roxburghii	Rroxscaffold_6G00416980
rosa_rugosa	Rorug03G0061200 Rorug03G0061200
rosa_samantha	Rh3AG119400 Rh3BG124000 Rh3CG125800 Rh3DG124900
rosa_wichuraiana	Rw3G010100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	95
Acc16I	TGCGCA	1 cut(s)	172
AclWI	GGATC	1 cut(s)	97
AcuI	CTGAAG	2 cut(s)	185, 194
AfaI	GTAC	1 cut(s)	49
AgsI	TTSAA	1 cut(s)	244
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	4 cut(s)	62, 214, 229, 257
AluI	AGCT	4 cut(s)	62, 214, 229, 257
AlwI	GGATC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	254
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
Asp700I	GAANNNNTTC	1 cut(s)	343
AspLEI	GCGC	1 cut(s)	173
AsuNHI	GCTAGC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	266
BfaI	CTAG	3 cut(s)	230, 285, 441
BfmI	CTRYAG	1 cut(s)	252
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
BmsI	GCATC	1 cut(s)	376
BmtI	GCTAGC	1 cut(s)	288
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
BsaJI	CCNNGG	2 cut(s)	270, 314
BsaWI	WCCGGW	1 cut(s)	380
Bse1I	ACTGG	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	270, 314
BseMII	CTCAG	3 cut(s)	203, 368, 411
BseNI	ACTGG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	266
BseYI	CCCAGC	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	381
Bsp143I	GATC	2 cut(s)	102, 302
BspCNI	CTCAG	3 cut(s)	202, 367, 410
BspMAI	CTGCAG	1 cut(s)	256
BspOI	GCTAGC	1 cut(s)	288
BspPI	GGATC	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	87
BssECI	CCNNGG	2 cut(s)	270, 314
BssMI	GATC	2 cut(s)	102, 302
BssT1I	CCWWGG	2 cut(s)	270, 314
Bst4CI	ACNGT	2 cut(s)	39, 52
Bst6I	CTCTTC	1 cut(s)	239
BstC8I	GCNNGC	3 cut(s)	60, 286, 391
BstDEI	CTNAG	3 cut(s)	189, 354, 397
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	2 cut(s)	105, 305
BstMBI	GATC	2 cut(s)	102, 302
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 77, 263
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	266
BstX2I	RGATCY	1 cut(s)	102
BstXI	CCANNNNNNTGG	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	80
Cac8I	GCNNGC	3 cut(s)	60, 286, 391
CfoI	GCGC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	48
CviAII	CATG	2 cut(s)	43, 281
CviJI	RGCY	6 cut(s)	62, 187, 214, 229, 257, 288
CviKI_1	RGCY	6 cut(s)	62, 187, 214, 229, 257, 288
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	3 cut(s)	189, 354, 397
DpnI	GATC	2 cut(s)	104, 304
DpnII	GATC	2 cut(s)	102, 302
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco130I	CCWWGG	2 cut(s)	270, 314
Eco32I	GATATC	1 cut(s)	298
Eco57I	CTGAAG	2 cut(s)	185, 194
EcoRV	GATATC	1 cut(s)	298
EcoT14I	CCWWGG	2 cut(s)	270, 314
EcoT22I	ATGCAT	1 cut(s)	241
ErhI	CCWWGG	2 cut(s)	270, 314
FaeI	CATG	2 cut(s)	46, 284
FaiI	YATR	5 cut(s)	44, 95, 133, 282, 323
FatI	CATG	2 cut(s)	42, 280
Fnu4HI	GCNGC	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	255
FspAI	RTGCGCAY	1 cut(s)	172
FspBI	CTAG	3 cut(s)	230, 285, 441
FspI	TGCGCA	1 cut(s)	172
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	1 cut(s)	255
GsaI	CCCAGC	1 cut(s)	224
HapII	CCGG	1 cut(s)	381
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	46, 284
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	6 cut(s)	4, 22, 159, 350, 367, 434
HpaII	CCGG	1 cut(s)	381
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188I	TCNGA	4 cut(s)	261, 302, 349, 400
Hpy188III	TCNNGA	2 cut(s)	111, 163
Hpy8I	GTNNAC	1 cut(s)	180
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	2 cut(s)	39, 52
HpyCH4V	TGCA	5 cut(s)	58, 80, 239, 254, 389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 77, 263
HpyF3I	CTNAG	3 cut(s)	189, 354, 397
Hsp92II	CATG	2 cut(s)	46, 284
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	102, 302
LpnPI	CCDG	8 cut(s)	68, 90, 176, 234, 306, 341, 356, 394
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	3 cut(s)	230, 285, 441
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	2 cut(s)	104, 304
MboI	GATC	2 cut(s)	102, 302
MboII	GAAGA	3 cut(s)	256, 297, 443
MfeI	CAATTG	1 cut(s)	8
MflI	RGATCY	1 cut(s)	102
MluCI	AATT	2 cut(s)	8, 339
MlyI	GAGTC	2 cut(s)	344, 376
MnlI	CCTC	3 cut(s)	116, 198, 400
Mph1103I	ATGCAT	1 cut(s)	241
MroXI	GAANNNNTTC	1 cut(s)	343
MspI	CCGG	1 cut(s)	381
MunI	CAATTG	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	68, 77, 263
NdeII	GATC	2 cut(s)	102, 302
NheI	GCTAGC	1 cut(s)	284
NlaIII	CATG	2 cut(s)	46, 284
NmuCI	GTSAC	1 cut(s)	412
NsbI	TGCGCA	1 cut(s)	172
NsiI	ATGCAT	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	1 cut(s)	422
PdmI	GAANNNNTTC	1 cut(s)	343
PfeI	GAWTC	4 cut(s)	4, 22, 159, 434
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	2 cut(s)	344, 375
PpsI	GAGTC	2 cut(s)	344, 375
PsiI	TTATAA	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	220
PstI	CTGCAG	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	102
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	102, 302
SchI	GAGTC	2 cut(s)	344, 376
SetI	ASST	5 cut(s)	64, 216, 231, 259, 320
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	252
Sse9I	AATT	2 cut(s)	8, 339
SspMI	CTAG	3 cut(s)	230, 285, 441
StyI	CCWWGG	2 cut(s)	270, 314
TaaI	ACNGT	2 cut(s)	39, 52
TaqI	TCGA	2 cut(s)	112, 425
TasI	AATT	2 cut(s)	8, 339
TfiI	GAWTC	4 cut(s)	4, 22, 159, 434
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	1 cut(s)	31
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	343
XspI	CTAG	3 cut(s)	230, 285, 441
Zsp2I	ATGCAT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.