Rroxscaffold_6G00416980

Domain of unknown function (DUF3453)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
38805691 .. 38815229
9539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00416980.1

Sequence Viewer

Length: 3978 bp
ATGGTGGGCATGATGATGATGACCACCGCCAATTCCAACGAACGCCTCGCCCGCCTCTTGGACTCCGCCGTCGTCGCAGCCGACATACCGTCCAAGCTCGACCGGCTAACCCAATTGAAGCGAGATTTGCTCCGGCGAGACCCCGCTTTCATCTCCGAGCTCCTTCCTCGCCTCTTCGAGCTTCAGTCCGACCGGTTCAGTCCCGTTCGGAAATTTGCCACCGAAATGCTCGGCGAAATTGGATCGATGCACGTAGATTTCGTGCCTGAGATTGTGCCGTCGTTGATTAATGTGTTAAGCGATGATACACCGGCTGTGGCTCGCCAAGCCATTACTAGTGGGAGTGAGTTGTTTCGCTGCGTTCTAGAGAAGGTTGCACTTCAGGGTCTACATTCTAGTGAGTTGGACAGTTTGCTTGAGTCATCGTGGTCATGGATGTTGAAGTTGAAGGAAGAAATATTCTCGATAGCTTTTCAGCCAGGAAGCGGTGGAGTGAGGTTGCTGACATTGAAATTTGTCCAGGAAGTTATTCTTCTTTATACTCCTGATCCTAATGGCTCCCAAGAGCCCCCAGCTCATGAAGGACAATTGGTGGAATTTAATATATCTTGGCTTCGTGGCGGTCATCCCCTACTCAATGTTGGAAATTTGTCAATTGAGGCTAGTCAAAGTTTGGGCTCATTGCTTGATCAACTAAGGCTCCCAACTGTTAAGTCTCTTGGCAACTTAGTCATCGTTGTGCTTATTAATAGTCTTTCAGCAATTGCGAAGAATAGACCTGCTTTCTATGGTCGCATTTTGCCTGTATTACTTGGGTTTGATCCCTCAACTGCTGTCATTAATGGGATACGTGTCTCAGGAGCACGCTATGCCTTAAAAAATGCCTTCATCTCCTGCTTAAAATGTACTCACCAGGGTGCTGCACCGTGGCGAGATCGTTTAGTTGGGGCGTTGACCAAGATGAAAGATGGAGCGTTGGTAGAGCATGCCATTTATCCAGTTGGCAATATTAATGGAAATGTGGAGGGTCAAAACAATTCTCCAGTTATTAAGGAAGAGGAGCCCACAGTTAGAACATCTACTGCTGTGCAAAGTAATTTTGGGAGGAAACGATTGGGAGCACCGGATAGTAGTGAACTTGCTGAGGATGAAGACGCCTCTGGAAAGCGTATCAAATCAACACCTAGTGTCTCAGAAGAATCGGCCAAAGATGTAGATAGGAATATTTCTGTGTCTCAAGATGACATTTCTTCAAGTGGAACAGCCACTTCCAGAGGAAGTGGTGATAGTGGACCTGTGCAGCAACTTCTTGATATGTTTGGCGCATTGGTTGCTCAGGGTGAAAAAGCGGTTGGTTCTTTAGAGGTTCTTATCTCAAGTTTCTCCGCTGACATGCTAGCTGAGGTAGTGATGGCTAACATGTGCAACCTTCCTCCCAATCTTCCTGGAGCTGAAGGAGATGATGTATCTTTGATAAACATGGGTATAGTTGGCGGTGATTCTCGAGTCAAATATCCCCAATCATTTATTGCCGATGTACTTTCTCTTACAAGTACTTTCCCTCCAATAGCTGCACTTCTAGATGCTCATCAGTCGGCGTCTTATAATATAGTGAAATCTGAGCCGAAGGAAGAGCAGGTAACAGTTGTAGGTGATAGTGCTGTTGCATGTACTGATATGGATTATGAAGCTGAAACTGCTATGCTGCCTACTGGTTTACCAGCTTCACCTAATGTGTTTTCACCTGAGACAGAGAATGGTTGTCCGTCTCTTCCGTCTGATGTTGATGACATAGACGGTCTTGAGAATGAAATACCTGGGCTCGATTCTTCTGCTTGTAATAGTGGATTATCAGAACCTGTTGTTGCATCCTCTTCGACCTTCATGGATGTCGAAGATGCCAGTCTAGAGCAAGTTAGCAGTTTGAGTCAGCAGCCACTGCTTAATATACTTCCATCATTGTCGGCCGATAGGTCTGAGGAGCTTAGCCTTGGAGCAGCTGTTGCAGATGTCAACAGTCTGATATCTTCAACAGCAACATCAGTTGGGTTGACCCATCATCTTGTCCTGCCTAAGATGTCAGCGCCGGTTGTCATCCTTTCTGATGAAGAGAACGATCGTTTACAGAAGTTGGCTTTTACCCGCATAATCGAGGCATATAAGCAGATTGATGTTTCTGGCGGTTCCCAAGTTCGAATCTCTCTCCTTATACATTTAGGAGTCGAGTTCCTCTTGGACTTAGACCCCTGGAAACTGCTGCAGGAGCATATCTTGGCAGATTATACAAATCACGAGGCAAGACTGCACTTTTGGTTTATTACAGTTGAGAAGTCAGTTTTGGCCTTTTGCATACTATATCTGTTATTTGGAGAGGCAGAAGTGGAACACGATTTCTTTTCTTCTACAAACGCTACTTCTGTTTACGAAAAGTTCCTTTTAACTGTGGTAGAAACACTTAGAGATTCTTTACCACCATCAGATAAATCATTAAGTAGATTGCTTGGTGAGGTTCCATCTTTACCAAATTCAGTTTTGAAGTTATTGGAGTGCATGTGTTCGCCTGAAAATTGCGACAAAACTGAGAAGGAAGTACAAGGTGGTGATCGAGTGACTCAAGGTCTCAGTACTGTATGGAGCCTGATTTTGCTGAGGCCTCCTTTTCGAGATGGCTGCTTAAAAATTGCTCTACAGAGTGCAGTTCATCATCTGGAGGAAGTGCGTATGAAGGCTATACGTCTGGTTGCAAACAAGCTTTATCCGTTGTCAGCCATTGCCAAGCGAATTGAAGATTTTGCAATTGAAATGTTGCTTACTGTGAAAACTGATGATGCAACTGAAAGAACAGATGCTGATGGATCAAAAGCTGAATCCCAAAAGGATTCTGACTCAGAAAAACATTCGAATGAACCTCCAGCAGTGAGTGGCAACCAAGATATCTCCTCTGACACTCATCAATCATGCAATTCTCAAAGTATGTCACCGCTTTCAATTGCCGAGGCAGAGCGGTGTTTGTCATTGTATTTTGCTCTGTGCACAAAGAAGCACTCTCTTTTTCGCCAAATATTCGCTGTGTATGGAAATGCATCAAAGGCGGTTAAGCAGGCAGTTAATCATCATATTCCAAAACTAGTGCGTACAATGGGCTCATCACGAGATCTTCTTGATATTATTTCAGACCCTCCGTCTGGAAGCGAGAACCTCCTGATGCAGGTTTTGCATACACTGACAGATGGGGCAGTTCCCTCTCAAGAGCTGATATTTACCATTAGGAAGTTATATGATTCAAAACTGAAGGACATAGAGATTCTCATTCCGATATTACCATTTATACCAAAAGATGAGGTTATGTTAATCTTTCCCCAACTTGTGAATCTTCCCCTGGATAAGTTCCAAGCAGCACTAACTCGCACACTACAGGGATCATCCCATTCTGGTCCTCTTCTCGCTCCAGCTGAAGTCACAGATGCATGCAATGCATGTTTTGAGCAGCGACAGATATTCAACCAACAAGTTCTTGCTAAAGTTCTGAATCAATTGGTTGAGCAGATTCCCCTTCCTTTACTGTTCATGCGTACAGTATTGCAAGCTATTGGTGCTTTTCCTGCACTGGTGGATTTTATAATGGAGATCCTCTCTCGACTTGTGAGCAAACAGATATGGAAATACCCAAAGTTGTGGGTGGGATTCCTGAAGTGCGCATTGTTGACAAAGCCTCAGTCATTTGGCGTGTTGCTTCAGCTACCTCCAGCGCAGCTAGAAAATGCATTGAAGAGAACTGCAGCTCTGAAAGCACCCTTGGTTGCCCATGCTAGCCAACCAGATATCCGATCTTCACTTCCAAGGTCTATATTGGTAGTTTTGGGAATTGTTTCAGATTCTCAGGCACAAACAAGTCAGGCAAATACCGGAGATGCAAGCAACTCAGACAAGGAGGCAGTCACGGAGAAATCAAAAGAAGAATCATCTAGTGCTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1325

Amino Acids

143.8

Weight (kDa)

5.0

Isoelectric Point (pI)

51.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SYMPK_PTA1_N PF11935 104 - 321 1.4e-36 Symplekin/PTA1 N-terminal
Symplekin_C PF12295 1099 - 1258 5.2e-48 Symplekin tight junction protein C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1605, 3620
AasI GACNNNNNNGTC 1 cut(s) 68
Acc16I TGCGCA 1 cut(s) 3697
Acc36I ACCTGC 3 cut(s) 787, 1627, 3199
AccBSI CCGCTC 1 cut(s) 3004
AccI GTMKAC 1 cut(s) 388
AclWI GGATC 6 cut(s) 250, 542, 815, 2863, 3427, 3622
AcoI YGGCCR 2 cut(s) 1203, 1965
AcsI RAATTY 5 cut(s) 212, 512, 596, 646, 2524
AcuI CTGAAG 7 cut(s) 167, 365, 1473, 3311, 3474, 3710, 3719
AcyI GRCGYC 2 cut(s) 1155, 1598
AdeI CACNNNGTG 1 cut(s) 1187
AfaI GTAC 8 cut(s) 907, 1539, 1555, 1672, 2592, 2626, 3136, 3574
AfiI CCNNNNNNNGG 4 cut(s) 58, 485, 3185, 3208
AflIII ACRYGT 2 cut(s) 850, 1419
AgeI ACCGGT 1 cut(s) 192
AhdI GACNNNNNGTC 3 cut(s) 88, 2616, 3181
AhlI ACTAGT 2 cut(s) 335, 3127
AjnI CCWGG 7 cut(s) 478, 519, 912, 1444, 1816, 2246, 3378
AjuI GAANNNNNNNTTGG 6 cut(s) 1335, 1367, 2321, 2353, 3779, 3811
AleI CACNNNNGTG 1 cut(s) 915
Alw21I GWGCWC 4 cut(s) 162, 865, 1123, 3035
Alw26I GTCTC 8 cut(s) 132, 720, 859, 1195, 1239, 1742, 1773, 2624
Alw44I GTGCAC 1 cut(s) 3031
AlwI GGATC 6 cut(s) 250, 542, 815, 2863, 3427, 3622
AlwNI CAGNNNCTG 3 cut(s) 1859, 1939, 2849
Ama87I CYCGRG 1 cut(s) 1503
AoxI GGCC 4 cut(s) 1203, 1965, 2340, 2651
ApaLI GTGCAC 1 cut(s) 3031
ApoI RAATTY 5 cut(s) 212, 512, 596, 646, 2524
ArsI GACNNNNNNTTYG 4 cut(s) 2292, 2324, 3701, 3733
AseI ATTAAT 4 cut(s) 288, 747, 840, 1011
AsiGI ACCGGT 1 cut(s) 192
Asp700I GAANNNNTTC 2 cut(s) 528, 3868
AspLEI GCGC 4 cut(s) 1325, 2086, 3698, 3751
AspS9I GGNCC 2 cut(s) 1292, 3434
AsuII TTCGAA 2 cut(s) 2194, 2900
AsuNHI GCTAGC 2 cut(s) 1396, 3809
AvaI CYCGRG 1 cut(s) 1503
AvaII GGWCC 2 cut(s) 1292, 3434
BaeGI GKGCMC 1 cut(s) 3035
BanII GRGCYC 6 cut(s) 162, 570, 680, 1065, 1824, 3146
BauI CACGAG 2 cut(s) 2291, 3150
BbsI GAAGAC 1 cut(s) 1158
Bbv12I GWGCWC 4 cut(s) 162, 865, 1123, 3035
BbvCI CCTCAGC 3 cut(s) 1143, 1401, 2648
BccI CCATC 9 cut(s) 962, 1405, 1963, 2064, 2482, 2521, 2660, 2846, 3224
BceAI ACGGC 2 cut(s) 53, 262
BcgI CGANNNNNNTGC 6 cut(s) 1814, 1848, 1857, 1891, 2652, 2686
BciT130I CCWGG 7 cut(s) 480, 521, 914, 1446, 1818, 2248, 3380
BciVI GTATCC 1 cut(s) 840
BclI TGATCA 1 cut(s) 688
BcoDI GTCTC 8 cut(s) 132, 720, 859, 1195, 1239, 1742, 1773, 2624
BcuI ACTAGT 2 cut(s) 335, 3127
BfmI CTRYAG 4 cut(s) 2258, 2687, 3413, 3777
BfoI RGCGCY 1 cut(s) 2087
BfuAI ACCTGC 3 cut(s) 787, 1627, 3199
BfuI GTATCC 1 cut(s) 840
BglII AGATCT 1 cut(s) 3154
BlpI GCTNAGC 1 cut(s) 1985
BmcAI AGTACT 2 cut(s) 1555, 2626
Bme1390I CCNGG 7 cut(s) 480, 521, 914, 1446, 1818, 2248, 3380
Bme18I GGWCC 2 cut(s) 1292, 3434
BmeRI GACNNNNNGTC 3 cut(s) 88, 2616, 3181
BmeT110I CYCGRG 1 cut(s) 1503
BmgT120I GGNCC 2 cut(s) 1292, 3434
BmiI GGNNCC 6 cut(s) 559, 701, 1062, 2185, 2511, 2636
BmrFI CCNGG 7 cut(s) 480, 521, 914, 1446, 1818, 2248, 3380
BmtI GCTAGC 2 cut(s) 1400, 3813
BpiI GAAGAC 1 cut(s) 1158
BplI GAGNNNNNCTC 4 cut(s) 114, 146, 3617, 3649
BpmI CTGGAG 6 cut(s) 1026, 1467, 2729, 2895, 3432, 3729
Bpu10I CCTNAGC 4 cut(s) 1143, 1335, 1401, 2648
Bpu1102I GCTNAGC 1 cut(s) 1985
Bpu14I TTCGAA 2 cut(s) 2194, 2900
BpuEI CTTGAG 6 cut(s) 437, 1221, 1360, 1823, 2598, 3231
Bsa29I ATCGAT 1 cut(s) 245
BsaAI YACGTR 2 cut(s) 253, 851
BsaBI GATNNNNATC 1 cut(s) 1587
BsaHI GRCGYC 2 cut(s) 1155, 1598
BsaI GGTCTC 2 cut(s) 132, 2624
BsaJI CCNNGG 9 cut(s) 913, 926, 1817, 1990, 2246, 2994, 3378, 3795, 3839
BsaWI WCCGGW 3 cut(s) 192, 1123, 3905
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 485, 3185, 3208
Bse118I RCCGGY 4 cut(s) 102, 192, 310, 2086
Bse1I ACTGG 5 cut(s) 998, 1043, 1717, 1902, 3612
Bse3DI GCAATG 3 cut(s) 680, 2769, 3478
Bse8I GATNNNNATC 1 cut(s) 1587
BseBI CCWGG 7 cut(s) 480, 521, 914, 1446, 1818, 2248, 3380
BseCI ATCGAT 1 cut(s) 245
BseDI CCNNGG 9 cut(s) 913, 926, 1817, 1990, 2246, 2994, 3378, 3795, 3839
BseGI GGATG 7 cut(s) 441, 625, 1153, 1868, 1894, 2094, 3422
BseJI GATNNNNATC 1 cut(s) 1587
BseLI CCNNNNNNNGG 4 cut(s) 58, 485, 3185, 3208
BseMI GCAATG 3 cut(s) 680, 2769, 3478
BseNI ACTGG 5 cut(s) 998, 1043, 1717, 1902, 3612
BseRI GAGGAG 3 cut(s) 1073, 1994, 2929
BseSI GKGCMC 1 cut(s) 3035
BseX3I CGGCCG 1 cut(s) 1965
BseYI CCCAGC 1 cut(s) 571
BsgI GTGCAG 6 cut(s) 906, 1319, 1557, 2288, 2715, 3588
Bsh1285I CGRYCG 4 cut(s) 103, 193, 1968, 2119
BshFI GGCC 4 cut(s) 1205, 1967, 2342, 2653
BshTI ACCGGT 1 cut(s) 192
BshVI ATCGAT 1 cut(s) 245
BsiEI CGRYCG 4 cut(s) 103, 193, 1968, 2119
BsiHKAI GWGCWC 4 cut(s) 162, 865, 1123, 3035
BsiHKCI CYCGRG 1 cut(s) 1503
BsiSI CCGG 7 cut(s) 103, 133, 193, 311, 1124, 2087, 3906
BslFI GGGAC 1 cut(s) 186
BslI CCNNNNNNNGG 4 cut(s) 58, 485, 3185, 3208
BsmAI GTCTC 8 cut(s) 132, 720, 859, 1195, 1239, 1742, 1773, 2624
BsmBI CGTCTC 1 cut(s) 1773
BsmFI GGGAC 1 cut(s) 186
BsnI GGCC 4 cut(s) 1205, 1967, 2342, 2653
Bso31I GGTCTC 2 cut(s) 132, 2624
BsoBI CYCGRG 1 cut(s) 1503
Bsp119I TTCGAA 2 cut(s) 2194, 2900
Bsp1286I GDGCHC 9 cut(s) 162, 570, 680, 865, 1065, 1123, 1824, 3035, 3146
Bsp1720I GCTNAGC 1 cut(s) 1985
BspANI GGCC 4 cut(s) 1205, 1967, 2342, 2653
BspDI ATCGAT 1 cut(s) 245
BspHI TCATGA 1 cut(s) 577
BspLI GGNNCC 6 cut(s) 559, 701, 1062, 2185, 2511, 2636
BspMAI CTGCAG 2 cut(s) 2262, 3781
BspMI ACCTGC 3 cut(s) 787, 1627, 3199
BspOI GCTAGC 2 cut(s) 1400, 3813
BspPI GGATC 6 cut(s) 250, 542, 815, 2863, 3427, 3622
BspQI GCTCTTC 1 cut(s) 1626
BspT104I TTCGAA 2 cut(s) 2194, 2900
BspTNI GGTCTC 2 cut(s) 132, 2624
BsrBI CCGCTC 1 cut(s) 3004
BsrDI GCAATG 3 cut(s) 680, 2769, 3478
BsrFI RCCGGY 4 cut(s) 102, 192, 310, 2086
BsrI ACTGG 5 cut(s) 998, 1043, 1717, 1902, 3612
BssAI RCCGGY 4 cut(s) 102, 192, 310, 2086
BssECI CCNNGG 9 cut(s) 913, 926, 1817, 1990, 2246, 2994, 3378, 3795, 3839
BssNI GRCGYC 2 cut(s) 1155, 1598
BssSI CACGAG 2 cut(s) 2291, 3150
BssT1I CCWWGG 3 cut(s) 1990, 3795, 3839
Bst2BI CACGAG 2 cut(s) 2291, 3150
Bst2UI CCWGG 7 cut(s) 480, 521, 914, 1446, 1818, 2248, 3380
Bst6I CTCTTC 8 cut(s) 179, 1050, 1626, 1776, 1879, 2103, 3444, 3764
BstACI GRCGYC 2 cut(s) 1155, 1598
BstAPI GCANNNNNTGC 6 cut(s) 869, 1331, 1939, 2003, 3214, 3473
BstBAI YACGTR 2 cut(s) 253, 851
BstBI TTCGAA 2 cut(s) 2194, 2900
BstDSI CCRYGG 1 cut(s) 926
BstENI CCTNNNNNAGG 1 cut(s) 3206
BstF5I GGATG 7 cut(s) 441, 625, 1153, 1868, 1894, 2094, 3422
BstH2I RGCGCY 1 cut(s) 2087
BstHHI GCGC 4 cut(s) 1325, 2086, 3698, 3751
BstMAI GTCTC 8 cut(s) 132, 720, 859, 1195, 1239, 1742, 1773, 2624
BstMCI CGRYCG 4 cut(s) 103, 193, 1968, 2119
BstNI CCWGG 7 cut(s) 480, 521, 914, 1446, 1818, 2248, 3380
BstNSI RCATGY 7 cut(s) 989, 1396, 1423, 1671, 2554, 3471, 3480
BstSCI CCNGG 7 cut(s) 478, 519, 912, 1444, 1816, 2246, 3378
BstSFI CTRYAG 4 cut(s) 2258, 2687, 3413, 3777
BstSLI GKGCMC 1 cut(s) 3035
BstV2I GAAGAC 1 cut(s) 1158
BstX2I RGATCY 2 cut(s) 3154, 3627
BstXI CCANNNNNNTGG 1 cut(s) 3675
BstYI RGATCY 2 cut(s) 3154, 3627
BstZI CGGCCG 1 cut(s) 1965
Bsu15I ATCGAT 1 cut(s) 245
BsuI GTATCC 1 cut(s) 840
BsuRI GGCC 4 cut(s) 1205, 1967, 2342, 2653
BsuTUI ATCGAT 1 cut(s) 245
BtgI CCRYGG 1 cut(s) 926
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 7 cut(s) 441, 625, 1153, 1868, 1894, 2094, 3422
BtsI GCAGTG 2 cut(s) 1937, 2922
BtsIMutI CAGTG 4 cut(s) 1937, 2922, 3221, 3605
BveI ACCTGC 3 cut(s) 787, 1627, 3199
CaiI CAGNNNCTG 3 cut(s) 1859, 1939, 2849
CciI TCATGA 1 cut(s) 577
CfoI GCGC 4 cut(s) 1325, 2086, 3698, 3751
Cfr10I RCCGGY 4 cut(s) 102, 192, 310, 2086
Cfr13I GGNCC 2 cut(s) 1292, 3434
ClaI ATCGAT 1 cut(s) 245
CseI GACGC 2 cut(s) 1163, 1587
Csp6I GTAC 8 cut(s) 906, 1538, 1554, 1671, 2591, 2625, 3135, 3573
CspAI ACCGGT 1 cut(s) 192
CviQI GTAC 8 cut(s) 906, 1538, 1554, 1671, 2591, 2625, 3135, 3573
DraIII CACNNNGTG 1 cut(s) 1187
DrdI GACNNNNNNGTC 1 cut(s) 68
DriI GACNNNNNGTC 3 cut(s) 88, 2616, 3181
DseDI GACNNNNNNGTC 1 cut(s) 68
EaeI YGGCCR 2 cut(s) 1203, 1965
EagI CGGCCG 1 cut(s) 1965
Eam1104I CTCTTC 8 cut(s) 179, 1050, 1626, 1776, 1879, 2103, 3444, 3764
Eam1105I GACNNNNNGTC 3 cut(s) 88, 2616, 3181
EarI CTCTTC 8 cut(s) 179, 1050, 1626, 1776, 1879, 2103, 3444, 3764
EciI GGCGGA 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 160
EclXI CGGCCG 1 cut(s) 1965
Eco130I CCWWGG 3 cut(s) 1990, 3795, 3839
Eco147I AGGCCT 1 cut(s) 2653
Eco24I GRGCYC 6 cut(s) 162, 570, 680, 1065, 1824, 3146
Eco31I GGTCTC 2 cut(s) 132, 2624
Eco32I GATATC 3 cut(s) 2025, 2935, 3823
Eco47I GGWCC 2 cut(s) 1292, 3434
Eco52I CGGCCG 1 cut(s) 1965
Eco53kI GAGCTC 1 cut(s) 160
Eco57I CTGAAG 7 cut(s) 167, 365, 1473, 3311, 3474, 3710, 3719
Eco88I CYCGRG 1 cut(s) 1503
EcoICRI GAGCTC 1 cut(s) 160
EcoNI CCTNNNNNAGG 1 cut(s) 3206
EcoRII CCWGG 7 cut(s) 478, 519, 912, 1444, 1816, 2246, 3378
EcoRV GATATC 3 cut(s) 2025, 2935, 3823
EcoT14I CCWWGG 3 cut(s) 1990, 3795, 3839
EcoT22I ATGCAT 4 cut(s) 3085, 3469, 3478, 3766
EcoT38I GRGCYC 6 cut(s) 162, 570, 680, 1065, 1824, 3146
ErhI CCWWGG 3 cut(s) 1990, 3795, 3839
Esp3I CGTCTC 1 cut(s) 1773
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FaqI GGGAC 1 cut(s) 186
FauI CCCGC 3 cut(s) 59, 151, 2150
FbaI TGATCA 1 cut(s) 688
FblI GTMKAC 1 cut(s) 388
FokI GGATG 7 cut(s) 448, 612, 1160, 1855, 1901, 2081, 3409
FriOI GRGCYC 6 cut(s) 162, 570, 680, 1065, 1824, 3146
FspAI RTGCGCAY 1 cut(s) 3697
FspI TGCGCA 1 cut(s) 3697
GlaI GCGC 4 cut(s) 1324, 2085, 3697, 3750
GsaI CCCAGC 1 cut(s) 575
GsuI CTGGAG 6 cut(s) 1026, 1467, 2729, 2895, 3432, 3729
HaeII RGCGCY 1 cut(s) 2087
HaeIII GGCC 4 cut(s) 1205, 1967, 2342, 2653
HapII CCGG 7 cut(s) 103, 133, 193, 311, 1124, 2087, 3906
HgaI GACGC 2 cut(s) 1163, 1587
HhaI GCGC 4 cut(s) 1325, 2086, 3698, 3751
Hin1I GRCGYC 2 cut(s) 1155, 1598
Hin6I GCGC 4 cut(s) 1323, 2084, 3696, 3749
HinP1I GCGC 4 cut(s) 1323, 2084, 3696, 3749
HincII GTYRAC 4 cut(s) 954, 2014, 2052, 3705
HindII GTYRAC 4 cut(s) 954, 2014, 2052, 3705
HindIII AAGCTT 1 cut(s) 2750
HpaII CCGG 7 cut(s) 103, 133, 193, 311, 1124, 2087, 3906
Hpy99I CGWCG 3 cut(s) 74, 77, 283
HpyCH4IV ACGT 3 cut(s) 252, 850, 2734
HpySE526I ACGT 3 cut(s) 252, 850, 2734
Hsp92I GRCGYC 2 cut(s) 1155, 1598
HspAI GCGC 4 cut(s) 1323, 2084, 3696, 3749
Ksp22I TGATCA 1 cut(s) 688
LguI GCTCTTC 1 cut(s) 1626
MaeII ACGT 3 cut(s) 252, 850, 2734
MaeIII GTNAC 5 cut(s) 1639, 2608, 2976, 3457, 3937
MbiI CCGCTC 1 cut(s) 3004
MfeI CAATTG 7 cut(s) 113, 587, 654, 762, 2796, 2988, 3533
MflI RGATCY 2 cut(s) 3154, 3627
MhlI GDGCHC 9 cut(s) 162, 570, 680, 865, 1065, 1123, 1824, 3035, 3146
MlyI GAGTC 7 cut(s) 56, 428, 1515, 1936, 2229, 2605, 2879
MmeI TCCRAC 4 cut(s) 60, 213, 384, 622
Mph1103I ATGCAT 4 cut(s) 3085, 3469, 3478, 3766
MroXI GAANNNNTTC 2 cut(s) 528, 3868
MslI CAYNNNNRTG 6 cut(s) 14, 224, 396, 737, 915, 2901
MspA1I CMGCKG 3 cut(s) 1388, 2000, 3452
MspI CCGG 7 cut(s) 103, 133, 193, 311, 1124, 2087, 3906
MspR9I CCNGG 7 cut(s) 480, 521, 914, 1446, 1818, 2248, 3380
MunI CAATTG 7 cut(s) 113, 587, 654, 762, 2796, 2988, 3533
MvaI CCWGG 7 cut(s) 480, 521, 914, 1446, 1818, 2248, 3380
NheI GCTAGC 2 cut(s) 1396, 3809
NlaIV GGNNCC 6 cut(s) 559, 701, 1062, 2185, 2511, 2636
NmeAIII GCCGAG 2 cut(s) 210, 3019
NmuCI GTSAC 4 cut(s) 2608, 2976, 3457, 3937
NsbI TGCGCA 1 cut(s) 3697
NsiI ATGCAT 4 cut(s) 3085, 3469, 3478, 3766
NspI RCATGY 7 cut(s) 989, 1396, 1423, 1671, 2554, 3471, 3480
NspV TTCGAA 2 cut(s) 2194, 2900
OliI CACNNNNGTG 1 cut(s) 915
PaeI GCATGC 2 cut(s) 989, 3471
PaeR7I CTCGAG 1 cut(s) 1503
PagI TCATGA 1 cut(s) 577
PceI AGGCCT 1 cut(s) 2653
PciI ACATGT 1 cut(s) 1419
PciSI GCTCTTC 1 cut(s) 1626
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 258
PdmI GAANNNNTTC 2 cut(s) 528, 3868
PfoI TCCNGGA 2 cut(s) 519, 1444
PinAI ACCGGT 1 cut(s) 192
Ple19I CGATCG 1 cut(s) 2119
PleI GAGTC 7 cut(s) 56, 427, 1514, 1935, 2228, 2605, 2879
PpsI GAGTC 7 cut(s) 56, 427, 1514, 1935, 2228, 2605, 2879
Ppu21I YACGTR 2 cut(s) 253, 851
PscI ACATGT 1 cut(s) 1419
PshBI ATTAAT 4 cut(s) 288, 747, 840, 1011
PsiI TTATAA 2 cut(s) 1605, 3620
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 7 cut(s) 478, 519, 912, 1444, 1816, 2246, 3378
PspFI CCCAGC 1 cut(s) 571
PspGI CCWGG 7 cut(s) 478, 519, 912, 1444, 1816, 2246, 3378
PspN4I GGNNCC 6 cut(s) 559, 701, 1062, 2185, 2511, 2636
PspPI GGNCC 2 cut(s) 1292, 3434
PstI CTGCAG 2 cut(s) 2262, 3781
PstNI CAGNNNCTG 3 cut(s) 1859, 1939, 2849
PsuI RGATCY 2 cut(s) 3154, 3627
PvuI CGATCG 1 cut(s) 2119
PvuII CAGCTG 2 cut(s) 2000, 3452
RsaI GTAC 8 cut(s) 907, 1539, 1555, 1672, 2592, 2626, 3136, 3574
RsaNI GTAC 8 cut(s) 906, 1538, 1554, 1671, 2591, 2625, 3135, 3573
RseI CAYNNNNRTG 6 cut(s) 14, 224, 396, 737, 915, 2901
SacI GAGCTC 1 cut(s) 162
SapI GCTCTTC 1 cut(s) 1626
Sau96I GGNCC 2 cut(s) 1292, 3434
ScaI AGTACT 2 cut(s) 1555, 2626
SchI GAGTC 7 cut(s) 56, 428, 1515, 1936, 2229, 2605, 2879
ScrFI CCNGG 7 cut(s) 480, 521, 914, 1446, 1818, 2248, 3380
SduI GDGCHC 9 cut(s) 162, 570, 680, 865, 1065, 1123, 1824, 3035, 3146
SfcI CTRYAG 4 cut(s) 2258, 2687, 3413, 3777
Sfr274I CTCGAG 1 cut(s) 1503
SfuI TTCGAA 2 cut(s) 2194, 2900
SinI GGWCC 2 cut(s) 1292, 3434
SlaI CTCGAG 1 cut(s) 1503
SmiMI CAYNNNNRTG 6 cut(s) 14, 224, 396, 737, 915, 2901
SmlI CTYRAG 7 cut(s) 416, 1236, 1375, 1503, 1802, 2613, 3246
SmoI CTYRAG 7 cut(s) 416, 1236, 1375, 1503, 1802, 2613, 3246
SpeI ACTAGT 2 cut(s) 335, 3127
SphI GCATGC 2 cut(s) 989, 3471
SseBI AGGCCT 1 cut(s) 2653
SspI AATATT 4 cut(s) 459, 1009, 1225, 3063
SstI GAGCTC 1 cut(s) 162
StuI AGGCCT 1 cut(s) 2653
StyD4I CCNGG 7 cut(s) 478, 519, 912, 1444, 1816, 2246, 3378
StyI CCWWGG 3 cut(s) 1990, 3795, 3839
TaiI ACGT 3 cut(s) 255, 853, 2737
TatI WGTACW 6 cut(s) 905, 1537, 1553, 1670, 2590, 2624
TscAI CASTG 4 cut(s) 1944, 2922, 3228, 3612
TseFI GTSAC 4 cut(s) 2608, 2976, 3457, 3937
Tsp45I GTSAC 4 cut(s) 2608, 2976, 3457, 3937
TspGWI ACGGA 5 cut(s) 1755, 1764, 2748, 3171, 3956
TspRI CASTG 4 cut(s) 1944, 2922, 3228, 3612
VneI GTGCAC 1 cut(s) 3031
VpaK11BI GGWCC 2 cut(s) 1292, 3434
VspI ATTAAT 4 cut(s) 288, 747, 840, 1011
XagI CCTNNNNNAGG 1 cut(s) 3206
XapI RAATTY 5 cut(s) 212, 512, 596, 646, 2524
XbaI TCTAGA 3 cut(s) 364, 1579, 1906
XceI RCATGY 7 cut(s) 989, 1396, 1423, 1671, 2554, 3471, 3480
XhoI CTCGAG 1 cut(s) 1503
XmiI GTMKAC 1 cut(s) 388
XmnI GAANNNNTTC 2 cut(s) 528, 3868
ZrmI AGTACT 2 cut(s) 1555, 2626
Zsp2I ATGCAT 4 cut(s) 3085, 3469, 3478, 3766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.