Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8095628.1

Orthogroup ID

OG0007393

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 597

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8095628.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 500 bp

aaatctgagccaaaggaagagcaggtaacagttgtaggtgatagtgctgttgcatgtactgatatggattatgaagctgaaactgctatgttgcctactggtttaccagcttcacctaatgtgttttcacctgagacggagaatggttgtccgtctcttccgtctgatgttgatgacatagacggtcttgacaatgaaatacctgggcttgattcttctgcttgtaatagtggactatcagaacctgttgttgcatcctcatcgaccttcatggatgtcgaagatgccagtctagagcaagttagcagtttgagtcagcagccactgcttaatatacttccatcattgtcggccgataggtctgaggagcttagccttggagcagctgtggcagatgtcaacagtctgatatcttcaacagcaacatcagttgggttgacccatcatcttgtcctgcctaagatgtcggccccggttgtcatcctttctgatgaagagaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04530 map03015 map04530

Pfam Domains

Protein Families

DUF3453 Symplekin_C

Protein Analysis

166

Amino Acids

17.15

Weight (kDa)

4.05

Isoelectric Point (pI)

73.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01400 AT5G01400 AT5G01400
fragaria_vesca	FvH4_6g11410
malus_domestica	MD08G1209300.v1.1 MD12G1166800.v1.1
prunus_persica	Prupe.6G277600_v2.0.a1
pyrus_communis	pycom04g13880 pycom04g13890 pycom12g15880
rosa_chinensis	RchiOBHm_Chr3g0463071
rosa_laevigata	RLG00000024813
rosa_multiflora	Rmu_co8095628.1_g000001 Rmu_sc0000766.1_g000036 Rmu_sc0008124.1_g000011 Rmu_sc0008124.1_g000012 Rmu_sc0008124.1_g000013
rosa_roxburghii	Rroxscaffold_6G00416980
rosa_rugosa	Rorug03G0061200 Rorug03G0061200
rosa_samantha	Rh3AG119400 Rh3BG124000 Rh3CG125800 Rh3DG124900
rosa_wichuraiana	Rw3G010100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	13
AcoI	YGGCCR	1 cut(s)	351
AfaI	GTAC	1 cut(s)	58
AgsI	TTSAA	1 cut(s)	417
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	4 cut(s)	77, 110, 370, 386
AluI	AGCT	4 cut(s)	77, 110, 370, 386
Alw26I	GTCTC	2 cut(s)	128, 159
AlwNI	CAGNNNCTG	2 cut(s)	245, 325
AoxI	GGCC	2 cut(s)	351, 468
ApeKI	GCWGC	2 cut(s)	319, 383
AspS9I	GGNCC	1 cut(s)	469
AsuC2I	CCSGG	1 cut(s)	473
AsuHPI	GGTGA	3 cut(s)	50, 105, 120
BbvI	GCAGC	2 cut(s)	331, 395
BccI	CCATC	2 cut(s)	349, 450
BcgI	CGANNNNNNTGC	2 cut(s)	243, 277
BciT130I	CCWGG	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	473
BcoDI	GTCTC	2 cut(s)	128, 159
BfaI	CTAG	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	13
BisI	GCNGC	2 cut(s)	320, 384
BlpI	GCTNAGC	1 cut(s)	371
BlsI	GCNGC	2 cut(s)	321, 385
Bme1390I	CCNGG	2 cut(s)	204, 473
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	1 cut(s)	471
BmrFI	CCNGG	2 cut(s)	204, 473
BmsI	GCATC	2 cut(s)	263, 274
Bpu1102I	GCTNAGC	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	473
BsaJI	CCNNGG	3 cut(s)	203, 376, 471
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bse1I	ACTGG	2 cut(s)	103, 288
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	3 cut(s)	203, 376, 471
BseGI	GGATG	3 cut(s)	254, 280, 480
BseMII	CTCAG	2 cut(s)	123, 354
BseNI	ACTGG	2 cut(s)	103, 288
BseRI	GAGGAG	1 cut(s)	380
BseX3I	CGGCCG	1 cut(s)	351
BseXI	GCAGC	2 cut(s)	331, 395
Bsh1285I	CGRYCG	1 cut(s)	354
BshFI	GGCC	2 cut(s)	353, 470
BsiEI	CGRYCG	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	473
BsmAI	GTCTC	2 cut(s)	128, 159
BsmBI	CGTCTC	2 cut(s)	128, 159
BsnI	GGCC	2 cut(s)	353, 470
Bsp1720I	GCTNAGC	1 cut(s)	371
BspANI	GGCC	2 cut(s)	353, 470
BspCNI	CTCAG	2 cut(s)	124, 355
BspLI	GGNNCC	1 cut(s)	471
BspMI	ACCTGC	1 cut(s)	13
BspQI	GCTCTTC	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	103, 288
BssECI	CCNNGG	3 cut(s)	203, 376, 471
BssT1I	CCWWGG	1 cut(s)	376
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	3 cut(s)	31, 185, 404
Bst6I	CTCTTC	3 cut(s)	12, 162, 489
BstAPI	GCANNNNNTGC	1 cut(s)	325
BstDEI	CTNAG	5 cut(s)	6, 132, 363, 371, 459
BstF5I	GGATG	3 cut(s)	254, 280, 480
BstMAI	GTCTC	2 cut(s)	128, 159
BstMCI	CGRYCG	1 cut(s)	354
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 325, 389
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	57
BstSCI	CCNGG	2 cut(s)	202, 471
BstV1I	GCAGC	2 cut(s)	331, 395
BstZI	CGGCCG	1 cut(s)	351
BsuRI	GGCC	2 cut(s)	353, 470
BtsCI	GGATG	3 cut(s)	254, 280, 480
BtsI	GCAGTG	1 cut(s)	323
BtsIMutI	CAGTG	1 cut(s)	323
BveI	ACCTGC	1 cut(s)	13
CaiI	CAGNNNCTG	2 cut(s)	245, 325
Cfr13I	GGNCC	1 cut(s)	469
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	2 cut(s)	54, 271
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	5 cut(s)	6, 132, 363, 371, 459
EaeI	YGGCCR	1 cut(s)	351
EagI	CGGCCG	1 cut(s)	351
Eam1104I	CTCTTC	3 cut(s)	12, 162, 489
EarI	CTCTTC	3 cut(s)	12, 162, 489
EclXI	CGGCCG	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	376
Eco32I	GATATC	1 cut(s)	411
Eco52I	CGGCCG	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	202
EcoRV	GATATC	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	376
Esp3I	CGTCTC	2 cut(s)	128, 159
FaeI	CATG	2 cut(s)	57, 274
FaiI	YATR	7 cut(s)	55, 65, 72, 89, 179, 272, 335
FatI	CATG	2 cut(s)	53, 270
Fnu4HI	GCNGC	2 cut(s)	320, 384
FokI	GGATG	3 cut(s)	241, 287, 467
Fsp4HI	GCNGC	2 cut(s)	320, 384
FspBI	CTAG	1 cut(s)	293
GluI	GCNGC	2 cut(s)	320, 384
HaeIII	GGCC	2 cut(s)	353, 470
HapII	CCGG	1 cut(s)	473
Hin1II	CATG	2 cut(s)	57, 274
HincII	GTYRAC	2 cut(s)	400, 438
HindII	GTYRAC	2 cut(s)	400, 438
HinfI	GANTC	2 cut(s)	212, 313
HpaII	CCGG	1 cut(s)	473
HphI	GGTGA	3 cut(s)	50, 105, 120
Hpy166II	GTNNAC	4 cut(s)	104, 233, 400, 438
Hpy188I	TCNGA	6 cut(s)	7, 166, 241, 364, 408, 490
Hpy188III	TCNNGA	2 cut(s)	188, 293
Hpy8I	GTNNAC	4 cut(s)	104, 233, 400, 438
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	3 cut(s)	31, 185, 404
HpyCH4V	TGCA	2 cut(s)	53, 254
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 325, 389
HpyF3I	CTNAG	5 cut(s)	6, 132, 363, 371, 459
Hsp92II	CATG	2 cut(s)	57, 274
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	2 cut(s)	367, 380
Lsp1109I	GCAGC	2 cut(s)	331, 395
LweI	GCATC	2 cut(s)	263, 274
MaeI	CTAG	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	25
MboII	GAAGA	5 cut(s)	29, 149, 207, 293, 405
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	2 cut(s)	268, 358
MseI	TTAA	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	1 cut(s)	473
MspR9I	CCNGG	2 cut(s)	204, 473
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	3 cut(s)	83, 325, 389
NciI	CCSGG	1 cut(s)	473
NlaIII	CATG	2 cut(s)	57, 274
NlaIV	GGNNCC	1 cut(s)	471
NspI	RCATGY	1 cut(s)	57
PciSI	GCTCTTC	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	321, 385
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	471
PspPI	GGNCC	1 cut(s)	469
PstNI	CAGNNNCTG	2 cut(s)	245, 325
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	2 cut(s)	320, 384
Sau96I	GGNCC	1 cut(s)	469
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	2 cut(s)	204, 473
SfaNI	GCATC	2 cut(s)	263, 274
SspMI	CTAG	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	202, 471
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	3 cut(s)	31, 185, 404
TaqI	TCGA	2 cut(s)	263, 279
TatI	WGTACW	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	330
TseI	GCWGC	2 cut(s)	319, 383
TspDTI	ATGAA	3 cut(s)	87, 210, 259
TspGWI	ACGGA	3 cut(s)	141, 150, 152
TspRI	CASTG	1 cut(s)	330
XbaI	TCTAGA	1 cut(s)	292
XceI	RCATGY	1 cut(s)	57
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.