Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007393

Physical Location & Seq

Genomic Coordinates Forward (+)

18318609 .. 18321050

Gene Structure 2442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g15880.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGCCCCACTTTGCGATAAATTATTTGGATCGATCCCAGTCTGGTCCTCCTCTGGCTCCAGCTGAAATCTTGATTGCTATCCACGGAATTGATCCCGACAGAGATGGAATTCCACTAAAGAAGGTCACAGATGCATGCAATGCCTGCTTTGAGCAGAGGCAGATATTCACCCAACAAGTTCTTGCCAAAGTTTTGAATCAGTTGGTTGAGCAGATTCCTCTTCCTTTACTGTTCATGCGTACGGTATTACAAGCCATAGGTGCCTTTCCTGCACTGGTGGATTTTATAATGGAGATCCTGTCTCGGCTTGTGAGCAAGCAGATATGGAAATACCCGAAGTTGTGGGTGGGATTCTTAAAGTGTACGTTCTTGACAAAACCTCAGTCATTTGCCGTGCTGCTTCAGCTACCTCCAGCACAGCTAGAAAACGCACTGAAGAGAACTGCGGCTCTGAAAGGACCGTTGGTTGCTCATGCTAGTCAACCGGACATCCGATCTTCCCTTCCAAGGTCGATATTGGTAGTTTTGGGAATTTCTCAAGCCACGGCACAAACAAGTCAGTCTCAAGCTGCGGCACAGACAAGTCAGTCTCAAGCTGCGGCACAGACAAGTCAGTCTCAGGCCGCGGCACATACAAGTCAGTCTCAGGCCGAGGCACATACAAGTCAGTCTCAGGCCGAGGCATATACAAGTCAGTCTCAGGCCGAGGCACAGACAAGTCAGTCTAAGCCTGAGGCACAGACAGGTCAGTCTCAGGCCGAGGCACAGTCAAGTCAGTCCCAGGCTGGGGATGCAAGCAACTCGGAAAACGACGCAGTCACAGAGAAACCAAAGGAATCATCTAGTGCTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04530 map03015 map04530

Pfam Domains

Protein Families

DUF3453 Symplekin_C

Protein Analysis

285

Amino Acids

30.44

Weight (kDa)

6.52

Isoelectric Point (pI)

66.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01400 AT5G01400 AT5G01400
fragaria_vesca	FvH4_6g11410
malus_domestica	MD08G1209300.v1.1 MD12G1166800.v1.1
prunus_persica	Prupe.6G277600_v2.0.a1
pyrus_communis	pycom04g13880 pycom04g13890 pycom12g15880
rosa_chinensis	RchiOBHm_Chr3g0463071
rosa_laevigata	RLG00000024813
rosa_multiflora	Rmu_co8095628.1_g000001 Rmu_sc0000766.1_g000036 Rmu_sc0008124.1_g000011 Rmu_sc0008124.1_g000012 Rmu_sc0008124.1_g000013
rosa_roxburghii	Rroxscaffold_6G00416980
rosa_rugosa	Rorug03G0061200 Rorug03G0061200
rosa_samantha	Rh3AG119400 Rh3BG124000 Rh3CG125800 Rh3DG124900
rosa_wichuraiana	Rw3G010100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
AasI	GACNNNNNNGTC	4 cut(s)	586, 613, 721, 748
AccB1I	GGYRCC	1 cut(s)	260
AccII	CGCG	1 cut(s)	626
AciI	CCGC	5 cut(s)	446, 572, 599, 624, 626
AclWI	GGATC	4 cut(s)	27, 36, 86, 289
AcsI	RAATTY	2 cut(s)	108, 531
AcuI	CTGAAG	2 cut(s)	386, 455
AfaI	GTAC	2 cut(s)	241, 364
AfiI	CCNNNNNNNGG	3 cut(s)	507, 786, 787
AgsI	TTSAA	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	780
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AluBI	AGCT	5 cut(s)	62, 406, 421, 569, 596
AluI	AGCT	5 cut(s)	62, 406, 421, 569, 596
Alw26I	GTCTC	8 cut(s)	306, 567, 594, 621, 648, 675, 702, 756
AlwI	GGATC	4 cut(s)	27, 36, 86, 289
AoxI	GGCC	5 cut(s)	621, 648, 675, 702, 756
ApeKI	GCWGC	3 cut(s)	397, 569, 596
ApoI	RAATTY	2 cut(s)	108, 531
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
AspS9I	GGNCC	2 cut(s)	44, 458
AsuHPI	GGTGA	1 cut(s)	160
AvaII	GGWCC	2 cut(s)	44, 458
AxyI	CCTNAGG	1 cut(s)	732
BanI	GGYRCC	1 cut(s)	260
BbvI	GCAGC	3 cut(s)	384, 556, 583
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	2 cut(s)	377, 561
BcgI	CGANNNNNNTGC	2 cut(s)	783, 817
BciT130I	CCWGG	1 cut(s)	782
BcoDI	GTCTC	8 cut(s)	306, 567, 594, 621, 648, 675, 702, 756
BfaI	CTAG	4 cut(s)	422, 477, 843, 849
BisI	GCNGC	8 cut(s)	398, 447, 570, 573, 597, 600, 624, 627
BlsI	GCNGC	8 cut(s)	399, 448, 571, 574, 598, 601, 625, 628
Bme1390I	CCNGG	1 cut(s)	782
Bme18I	GGWCC	2 cut(s)	44, 458
BmgT120I	GGNCC	2 cut(s)	44, 458
BmiI	GGNNCC	2 cut(s)	57, 262
BmrFI	CCNGG	1 cut(s)	782
BmrI	ACTGGG	1 cut(s)	31
BmsI	GCATC	2 cut(s)	121, 781
BmuI	ACTGGG	1 cut(s)	31
BpmI	CTGGAG	2 cut(s)	42, 396
BpuEI	CTTGAG	3 cut(s)	522, 549, 576
Bsa29I	ATCGAT	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	77
BsaJI	CCNNGG	9 cut(s)	82, 506, 543, 624, 651, 678, 705, 759, 780
BsaWI	WCCGGW	1 cut(s)	484
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bsc4I	CCNNNNNNNGG	3 cut(s)	507, 786, 787
Bse1I	ACTGG	2 cut(s)	37, 279
Bse21I	CCTNAGG	1 cut(s)	732
Bse3DI	GCAATG	1 cut(s)	145
Bse8I	GATNNNNATC	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	782
BseCI	ATCGAT	1 cut(s)	31
BseDI	CCNNGG	9 cut(s)	82, 506, 543, 624, 651, 678, 705, 759, 780
BseGI	GGATG	2 cut(s)	489, 796
BseJI	GATNNNNATC	1 cut(s)	77
BseLI	CCNNNNNNNGG	3 cut(s)	507, 786, 787
BseMI	GCAATG	1 cut(s)	145
BseMII	CTCAG	7 cut(s)	395, 632, 659, 686, 713, 723, 767
BseNI	ACTGG	2 cut(s)	37, 279
BseRI	GAGGAG	1 cut(s)	39
BseXI	GCAGC	3 cut(s)	384, 556, 583
BseYI	CCCAGC	1 cut(s)	785
BsgI	GTGCAG	1 cut(s)	255
Bsh1236I	CGCG	1 cut(s)	626
BshFI	GGCC	5 cut(s)	623, 650, 677, 704, 758
BshNI	GGYRCC	1 cut(s)	260
BshVI	ATCGAT	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	485
BsiWI	CGTACG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	763
BslI	CCNNNNNNNGG	3 cut(s)	507, 786, 787
BsmAI	GTCTC	8 cut(s)	306, 567, 594, 621, 648, 675, 702, 756
BsmFI	GGGAC	1 cut(s)	763
BsnI	GGCC	5 cut(s)	623, 650, 677, 704, 758
Bsp143I	GATC	5 cut(s)	28, 32, 91, 294, 494
BspACI	CCGC	5 cut(s)	446, 572, 599, 624, 626
BspANI	GGCC	5 cut(s)	623, 650, 677, 704, 758
BspCNI	CTCAG	7 cut(s)	394, 631, 658, 685, 712, 724, 766
BspDI	ATCGAT	1 cut(s)	31
BspFNI	CGCG	1 cut(s)	626
BspLI	GGNNCC	2 cut(s)	57, 262
BspPI	GGATC	4 cut(s)	27, 36, 86, 289
BspT107I	GGYRCC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	145
BsrI	ACTGG	2 cut(s)	37, 279
BssECI	CCNNGG	9 cut(s)	82, 506, 543, 624, 651, 678, 705, 759, 780
BssMI	GATC	5 cut(s)	28, 32, 91, 294, 494
BssT1I	CCWWGG	1 cut(s)	506
Bst2UI	CCWGG	1 cut(s)	782
Bst4CI	ACNGT	4 cut(s)	231, 244, 462, 768
Bst6I	CTCTTC	2 cut(s)	225, 431
BstAPI	GCANNNNNTGC	2 cut(s)	140, 144
BstC8I	GCNNGC	4 cut(s)	136, 145, 317, 796
BstDEI	CTNAG	8 cut(s)	381, 618, 645, 672, 699, 726, 732, 753
BstDSI	CCRYGG	3 cut(s)	82, 543, 624
BstF5I	GGATG	2 cut(s)	489, 796
BstFNI	CGCG	1 cut(s)	626
BstKTI	GATC	5 cut(s)	31, 35, 94, 297, 497
BstMAI	GTCTC	8 cut(s)	306, 567, 594, 621, 648, 675, 702, 756
BstMBI	GATC	5 cut(s)	28, 32, 91, 294, 494
BstMWI	GCNNNNNNNGC	6 cut(s)	140, 144, 260, 269, 403, 791
BstNI	CCWGG	1 cut(s)	782
BstNSI	RCATGY	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	780
BstUI	CGCG	1 cut(s)	626
BstV1I	GCAGC	3 cut(s)	384, 556, 583
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
Bsu15I	ATCGAT	1 cut(s)	31
Bsu36I	CCTNAGG	1 cut(s)	732
BsuRI	GGCC	5 cut(s)	623, 650, 677, 704, 758
BsuTUI	ATCGAT	1 cut(s)	31
BtgI	CCRYGG	3 cut(s)	82, 543, 624
BtsCI	GGATG	2 cut(s)	489, 796
BtsIMutI	CAGTG	2 cut(s)	272, 431
Cac8I	GCNNGC	4 cut(s)	136, 145, 317, 796
Cfr13I	GGNCC	2 cut(s)	44, 458
Cfr42I	CCGCGG	1 cut(s)	627
ClaI	ATCGAT	1 cut(s)	31
CseI	GACGC	1 cut(s)	821
Csp6I	GTAC	2 cut(s)	240, 363
CviAII	CATG	3 cut(s)	135, 235, 473
CviQI	GTAC	2 cut(s)	240, 363
DdeI	CTNAG	8 cut(s)	381, 618, 645, 672, 699, 726, 732, 753
DpnI	GATC	5 cut(s)	30, 34, 93, 296, 496
DpnII	GATC	5 cut(s)	28, 32, 91, 294, 494
DrdI	GACNNNNNNGTC	4 cut(s)	586, 613, 721, 748
DseDI	GACNNNNNNGTC	4 cut(s)	586, 613, 721, 748
Eam1104I	CTCTTC	2 cut(s)	225, 431
EarI	CTCTTC	2 cut(s)	225, 431
Eco130I	CCWWGG	1 cut(s)	506
Eco47I	GGWCC	2 cut(s)	44, 458
Eco57I	CTGAAG	2 cut(s)	386, 455
Eco81I	CCTNAGG	1 cut(s)	732
EcoRI	GAATTC	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	780
EcoT14I	CCWWGG	1 cut(s)	506
EcoT22I	ATGCAT	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	506
FaeI	CATG	3 cut(s)	138, 238, 476
FaqI	GGGAC	1 cut(s)	763
FatI	CATG	3 cut(s)	134, 234, 472
Fnu4HI	GCNGC	8 cut(s)	398, 447, 570, 573, 597, 600, 624, 627
FokI	GGATG	2 cut(s)	476, 803
Fsp4HI	GCNGC	8 cut(s)	398, 447, 570, 573, 597, 600, 624, 627
FspBI	CTAG	4 cut(s)	422, 477, 843, 849
GluI	GCNGC	8 cut(s)	398, 447, 570, 573, 597, 600, 624, 627
GsaI	CCCAGC	1 cut(s)	789
GsuI	CTGGAG	2 cut(s)	42, 396
HaeIII	GGCC	5 cut(s)	623, 650, 677, 704, 758
HapII	CCGG	1 cut(s)	485
HgaI	GACGC	1 cut(s)	821
Hin1II	CATG	3 cut(s)	138, 238, 476
HincII	GTYRAC	1 cut(s)	482
HindII	GTYRAC	1 cut(s)	482
HinfI	GANTC	4 cut(s)	196, 214, 351, 836
HpaII	CCGG	1 cut(s)	485
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	2 cut(s)	363, 482
Hpy188I	TCNGA	3 cut(s)	453, 494, 805
Hpy188III	TCNNGA	3 cut(s)	70, 95, 370
Hpy8I	GTNNAC	2 cut(s)	363, 482
Hpy99I	CGWCG	1 cut(s)	815
HpyAV	CCTTC	2 cut(s)	115, 512
HpyCH4III	ACNGT	4 cut(s)	231, 244, 462, 768
HpyCH4IV	ACGT	1 cut(s)	365
HpyCH4V	TGCA	4 cut(s)	134, 138, 272, 794
HpyF10VI	GCNNNNNNNGC	6 cut(s)	140, 144, 260, 269, 403, 791
HpyF3I	CTNAG	8 cut(s)	381, 618, 645, 672, 699, 726, 732, 753
HpySE526I	ACGT	1 cut(s)	365
Hsp92II	CATG	3 cut(s)	138, 238, 476
KspI	CCGCGG	1 cut(s)	627
Kzo9I	GATC	5 cut(s)	28, 32, 91, 294, 494
LmnI	GCTCC	1 cut(s)	61
Lsp1109I	GCAGC	3 cut(s)	384, 556, 583
LweI	GCATC	2 cut(s)	121, 781
MaeI	CTAG	4 cut(s)	422, 477, 843, 849
MaeII	ACGT	1 cut(s)	365
MaeIII	GTNAC	2 cut(s)	124, 817
MalI	GATC	5 cut(s)	30, 34, 93, 296, 496
MboI	GATC	5 cut(s)	28, 32, 91, 294, 494
MboII	GAAGA	3 cut(s)	212, 448, 489
MflI	RGATCY	1 cut(s)	294
MluCI	AATT	4 cut(s)	19, 87, 108, 531
Mph1103I	ATGCAT	1 cut(s)	136
MseI	TTAA	1 cut(s)	356
MspA1I	CMGCKG	2 cut(s)	62, 626
MspI	CCGG	1 cut(s)	485
MspR9I	CCNGG	1 cut(s)	782
MvaI	CCWGG	1 cut(s)	782
MvnI	CGCG	1 cut(s)	626
MwoI	GCNNNNNNNGC	6 cut(s)	140, 144, 260, 269, 403, 791
NdeII	GATC	5 cut(s)	28, 32, 91, 294, 494
NlaIII	CATG	3 cut(s)	138, 238, 476
NlaIV	GGNNCC	2 cut(s)	57, 262
NmeAIII	GCCGAG	5 cut(s)	283, 676, 703, 730, 784
NmuCI	GTSAC	2 cut(s)	124, 817
NsiI	ATGCAT	1 cut(s)	136
NspI	RCATGY	1 cut(s)	138
PaeI	GCATGC	1 cut(s)	138
PfeI	GAWTC	4 cut(s)	196, 214, 351, 836
Pfl23II	CGTACG	1 cut(s)	239
PflFI	GACNNNGTC	1 cut(s)	815
PkrI	GCNGC	8 cut(s)	399, 448, 571, 574, 598, 601, 625, 628
PsiI	TTATAA	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	780
PspFI	CCCAGC	1 cut(s)	785
PspGI	CCWGG	1 cut(s)	780
PspLI	CGTACG	1 cut(s)	239
PspN4I	GGNNCC	2 cut(s)	57, 262
PspPI	GGNCC	2 cut(s)	44, 458
PsuI	RGATCY	1 cut(s)	294
PsyI	GACNNNGTC	1 cut(s)	815
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	2 cut(s)	241, 364
RsaNI	GTAC	2 cut(s)	240, 363
SacII	CCGCGG	1 cut(s)	627
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	8 cut(s)	398, 447, 570, 573, 597, 600, 624, 627
Sau3AI	GATC	5 cut(s)	28, 32, 91, 294, 494
Sau96I	GGNCC	2 cut(s)	44, 458
ScrFI	CCNGG	1 cut(s)	782
SfaNI	GCATC	2 cut(s)	121, 781
Sfr303I	CCGCGG	1 cut(s)	627
SgrBI	CCGCGG	1 cut(s)	627
SinI	GGWCC	2 cut(s)	44, 458
SmlI	CTYRAG	3 cut(s)	537, 564, 591
SmoI	CTYRAG	3 cut(s)	537, 564, 591
SphI	GCATGC	1 cut(s)	138
Sse9I	AATT	4 cut(s)	19, 87, 108, 531
SsiI	CCGC	5 cut(s)	446, 572, 599, 624, 626
SspMI	CTAG	4 cut(s)	422, 477, 843, 849
StyD4I	CCNGG	1 cut(s)	780
StyI	CCWWGG	1 cut(s)	506
TaaI	ACNGT	4 cut(s)	231, 244, 462, 768
TaiI	ACGT	1 cut(s)	368
TaqI	TCGA	2 cut(s)	31, 512
TasI	AATT	4 cut(s)	19, 87, 108, 531
TauI	GCSGC	5 cut(s)	449, 575, 602, 626, 629
TfiI	GAWTC	4 cut(s)	196, 214, 351, 836
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TscAI	CASTG	2 cut(s)	279, 438
TseFI	GTSAC	2 cut(s)	124, 817
TseI	GCWGC	3 cut(s)	397, 569, 596
Tsp45I	GTSAC	2 cut(s)	124, 817
TspDTI	ATGAA	1 cut(s)	223
TspGWI	ACGGA	1 cut(s)	99
TspRI	CASTG	2 cut(s)	279, 438
Tth111I	GACNNNGTC	1 cut(s)	815
VpaK11BI	GGWCC	2 cut(s)	44, 458
XapI	RAATTY	2 cut(s)	108, 531
XceI	RCATGY	1 cut(s)	138
XspI	CTAG	4 cut(s)	422, 477, 843, 849
Zsp2I	ATGCAT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.