Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007393

Physical Location & Seq

Genomic Coordinates Forward (+)

16771505 .. 16773368

Gene Structure 1864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g13890.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCGTATGGTATTACAAGCCATAGGTGCCTTTCCTGCACTGGTGGATTTTATAATGGAAATCCTTTCTCGAATTGTGAGCAAGCAGATATGGAAATACCCAAAATTGTGGGTGGGATTCTTGAAGTGTGCGTTCTTGACAAAACCTCAGTCATTTGCCGTGCTGCTTCAGATGGTATATAATTTATTGTCTCAGCTACCTTCAGCACAGCTAGAAAACGCACTGAAGAGAACTGCAGCTCCGAAAGGACCGTTGGTTGCTCATGCCAGTCAACCGGACATCCGATCTTCCCTTCCAAGGTCAATATTGGTAGTTTTGGGAATTGTTTCAGATTCGTCGGCACAAACAGGTCAATCTCAGGCCGAGGCACATACAAGTCAGACTCAGGCCGAGATACAAACCAGTCAGTCCCAGGCCGAGGCACAAACAAGTCAGTCCCAGGCCGGCGATGCAAGCAACTTGGAAAAGGACGCAGTCACAGAGAAATCAAAGGAGTCATCGTGTTATTATCAAATGGGGAATGCCGTAATAAGTACGGACCGCATAGCCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04530 map03015 map04530

Pfam Domains

Protein Families

DUF3453 Symplekin_C

Protein Analysis

185

Amino Acids

19.97

Weight (kDa)

8.56

Isoelectric Point (pI)

52.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01400 AT5G01400 AT5G01400
fragaria_vesca	FvH4_6g11410
malus_domestica	MD08G1209300.v1.1 MD12G1166800.v1.1
prunus_persica	Prupe.6G277600_v2.0.a1
pyrus_communis	pycom04g13880 pycom04g13890 pycom12g15880
rosa_chinensis	RchiOBHm_Chr3g0463071
rosa_laevigata	RLG00000024813
rosa_multiflora	Rmu_co8095628.1_g000001 Rmu_sc0000766.1_g000036 Rmu_sc0008124.1_g000011 Rmu_sc0008124.1_g000012 Rmu_sc0008124.1_g000013
rosa_roxburghii	Rroxscaffold_6G00416980
rosa_rugosa	Rorug03G0061200 Rorug03G0061200
rosa_samantha	Rh3AG119400 Rh3BG124000 Rh3CG125800 Rh3DG124900
rosa_wichuraiana	Rw3G010100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	26
AciI	CCGC	1 cut(s)	541
AcuI	CTGAAG	3 cut(s)	152, 186, 245
AfaI	GTAC	1 cut(s)	535
AfiI	CCNNNNNNNGG	2 cut(s)	297, 418
AgsI	TTSAA	1 cut(s)	124
AjnI	CCWGG	2 cut(s)	411, 438
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AloI	GAACNNNNNNTCC	2 cut(s)	223, 255
AluBI	AGCT	3 cut(s)	196, 211, 239
AluI	AGCT	3 cut(s)	196, 211, 239
Alw26I	GTCTC	1 cut(s)	195
AoxI	GGCC	4 cut(s)	360, 387, 414, 441
ApeKI	GCWGC	2 cut(s)	163, 236
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
Asp700I	GAANNNNTTC	1 cut(s)	325
AspS9I	GGNCC	2 cut(s)	248, 538
AvaII	GGWCC	2 cut(s)	248, 538
BanI	GGYRCC	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	150, 248
BccI	CCATC	1 cut(s)	166
BceAI	ACGGC	2 cut(s)	143, 509
BciT130I	CCWGG	2 cut(s)	413, 440
BcoDI	GTCTC	1 cut(s)	195
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	2 cut(s)	164, 237
BlsI	GCNGC	2 cut(s)	165, 238
Bme1390I	CCNGG	2 cut(s)	413, 440
Bme18I	GGWCC	2 cut(s)	248, 538
BmgT120I	GGNCC	2 cut(s)	248, 538
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	2 cut(s)	413, 440
BmsI	GCATC	1 cut(s)	439
BsaAI	YACGTR	1 cut(s)	552
BsaJI	CCNNGG	5 cut(s)	296, 363, 411, 417, 438
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	4 cut(s)	223, 253, 485, 515
Bsc4I	CCNNNNNNNGG	2 cut(s)	297, 418
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	3 cut(s)	45, 267, 402
BseBI	CCWGG	2 cut(s)	413, 440
BseDI	CCNNGG	5 cut(s)	296, 363, 411, 417, 438
BseGI	GGATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	2 cut(s)	297, 418
BseMII	CTCAG	4 cut(s)	161, 206, 371, 398
BseNI	ACTGG	3 cut(s)	45, 267, 402
BseXI	GCAGC	2 cut(s)	150, 248
BsgI	GTGCAG	1 cut(s)	21
BshFI	GGCC	4 cut(s)	362, 389, 416, 443
BshNI	GGYRCC	1 cut(s)	26
BsiSI	CCGG	2 cut(s)	275, 444
BslFI	GGGAC	2 cut(s)	394, 421
BslI	CCNNNNNNNGG	2 cut(s)	297, 418
BsmAI	GTCTC	1 cut(s)	195
BsmFI	GGGAC	2 cut(s)	394, 421
BsmI	GAATGC	1 cut(s)	526
BsnI	GGCC	4 cut(s)	362, 389, 416, 443
Bsp143I	GATC	1 cut(s)	284
BspACI	CCGC	1 cut(s)	541
BspANI	GGCC	4 cut(s)	362, 389, 416, 443
BspCNI	CTCAG	4 cut(s)	160, 205, 370, 397
BspLI	GGNNCC	1 cut(s)	28
BspMAI	CTGCAG	1 cut(s)	238
BspT107I	GGYRCC	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	443
BsrI	ACTGG	3 cut(s)	45, 267, 402
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	5 cut(s)	296, 363, 411, 417, 438
BssMI	GATC	1 cut(s)	284
BssT1I	CCWWGG	1 cut(s)	296
Bst2UI	CCWGG	2 cut(s)	413, 440
Bst4CI	ACNGT	1 cut(s)	252
Bst6I	CTCTTC	1 cut(s)	221
BstBAI	YACGTR	1 cut(s)	552
BstC8I	GCNNGC	3 cut(s)	83, 445, 454
BstDEI	CTNAG	4 cut(s)	147, 192, 357, 384
BstF5I	GGATG	1 cut(s)	279
BstKTI	GATC	1 cut(s)	287
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	1 cut(s)	284
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 35, 449, 453
BstNI	CCWGG	2 cut(s)	413, 440
BstSCI	CCNGG	2 cut(s)	411, 438
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	150, 248
BstXI	CCANNNNNNTGG	1 cut(s)	108
BsuRI	GGCC	4 cut(s)	362, 389, 416, 443
BtgZI	GCGATG	1 cut(s)	462
BtsCI	GGATG	1 cut(s)	279
BtsIMutI	CAGTG	2 cut(s)	38, 221
Cac8I	GCNNGC	3 cut(s)	83, 445, 454
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	2 cut(s)	248, 538
CpoI	CGGWCCG	1 cut(s)	538
CseI	GACGC	1 cut(s)	479
Csp6I	GTAC	1 cut(s)	534
CspI	CGGWCCG	1 cut(s)	538
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	9 cut(s)	20, 196, 211, 239, 362, 389, 416, 443, 548
CviKI_1	RGCY	9 cut(s)	20, 196, 211, 239, 362, 389, 416, 443, 548
CviQI	GTAC	1 cut(s)	534
DdeI	CTNAG	4 cut(s)	147, 192, 357, 384
DpnI	GATC	1 cut(s)	286
DpnII	GATC	1 cut(s)	284
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	296
Eco47I	GGWCC	2 cut(s)	248, 538
Eco57I	CTGAAG	3 cut(s)	152, 186, 245
EcoRII	CCWGG	2 cut(s)	411, 438
EcoT14I	CCWWGG	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	1 cut(s)	266
FaiI	YATR	9 cut(s)	8, 23, 53, 91, 178, 180, 264, 372, 545
FaqI	GGGAC	2 cut(s)	394, 421
FatI	CATG	1 cut(s)	262
Fnu4HI	GCNGC	2 cut(s)	164, 237
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	2 cut(s)	164, 237
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	2 cut(s)	164, 237
HaeIII	GGCC	4 cut(s)	362, 389, 416, 443
HapII	CCGG	2 cut(s)	275, 444
HgaI	GACGC	1 cut(s)	479
Hin1II	CATG	1 cut(s)	266
HincII	GTYRAC	1 cut(s)	272
HindII	GTYRAC	1 cut(s)	272
HinfI	GANTC	4 cut(s)	117, 332, 382, 494
HpaII	CCGG	2 cut(s)	275, 444
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	5 cut(s)	171, 243, 284, 331, 381
Hpy188III	TCNNGA	3 cut(s)	69, 121, 136
Hpy8I	GTNNAC	1 cut(s)	272
Hpy99I	CGWCG	1 cut(s)	340
HpyAV	CCTTC	2 cut(s)	210, 302
HpyCH4III	ACNGT	1 cut(s)	252
HpyCH4IV	ACGT	1 cut(s)	551
HpyCH4V	TGCA	3 cut(s)	38, 236, 452
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 35, 449, 453
HpyF3I	CTNAG	4 cut(s)	147, 192, 357, 384
HpySE526I	ACGT	1 cut(s)	551
Hsp92II	CATG	1 cut(s)	266
KroI	GCCGGC	1 cut(s)	443
KroNI	GCCGGC	1 cut(s)	445
Kzo9I	GATC	1 cut(s)	284
LmnI	GCTCC	1 cut(s)	244
Lsp1109I	GCAGC	2 cut(s)	150, 248
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	1 cut(s)	551
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	1 cut(s)	286
MboI	GATC	1 cut(s)	284
MboII	GAAGA	2 cut(s)	238, 279
MluCI	AATT	4 cut(s)	72, 104, 181, 321
MlyI	GAGTC	2 cut(s)	376, 503
MnlI	CCTC	3 cut(s)	156, 358, 412
MroNI	GCCGGC	1 cut(s)	443
MroXI	GAANNNNTTC	1 cut(s)	325
MspI	CCGG	2 cut(s)	275, 444
MspR9I	CCNGG	2 cut(s)	413, 440
Mva1269I	GAATGC	1 cut(s)	526
MvaI	CCWGG	2 cut(s)	413, 440
MwoI	GCNNNNNNNGC	4 cut(s)	26, 35, 449, 453
NaeI	GCCGGC	1 cut(s)	445
NdeII	GATC	1 cut(s)	284
NgoMIV	GCCGGC	1 cut(s)	443
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	1 cut(s)	28
NmeAIII	GCCGAG	3 cut(s)	388, 415, 442
NmuCI	GTSAC	1 cut(s)	475
PctI	GAATGC	1 cut(s)	526
PdiI	GCCGGC	1 cut(s)	445
PdmI	GAANNNNTTC	1 cut(s)	325
PfeI	GAWTC	2 cut(s)	117, 332
PflFI	GACNNNGTC	1 cut(s)	473
PkrI	GCNGC	2 cut(s)	165, 238
PleI	GAGTC	2 cut(s)	376, 502
PpsI	GAGTC	2 cut(s)	376, 502
Ppu21I	YACGTR	1 cut(s)	552
PsiI	TTATAA	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	411, 438
PspGI	CCWGG	2 cut(s)	411, 438
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	2 cut(s)	248, 538
PstI	CTGCAG	1 cut(s)	238
PsyI	GACNNNGTC	1 cut(s)	473
RsaI	GTAC	1 cut(s)	535
RsaNI	GTAC	1 cut(s)	534
Rsr2I	CGGWCCG	1 cut(s)	538
RsrII	CGGWCCG	1 cut(s)	538
SatI	GCNGC	2 cut(s)	164, 237
Sau3AI	GATC	1 cut(s)	284
Sau96I	GGNCC	2 cut(s)	248, 538
SchI	GAGTC	2 cut(s)	376, 503
ScrFI	CCNGG	2 cut(s)	413, 440
SetI	ASST	9 cut(s)	28, 148, 198, 202, 213, 241, 302, 352, 554
SfaNI	GCATC	1 cut(s)	439
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	2 cut(s)	248, 538
Sse9I	AATT	4 cut(s)	72, 104, 181, 321
SsiI	CCGC	1 cut(s)	541
SspI	AATATT	1 cut(s)	306
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	2 cut(s)	411, 438
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	252
TaiI	ACGT	1 cut(s)	554
TaqI	TCGA	1 cut(s)	70
TasI	AATT	4 cut(s)	72, 104, 181, 321
TfiI	GAWTC	2 cut(s)	117, 332
TscAI	CASTG	2 cut(s)	45, 228
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	2 cut(s)	163, 236
Tsp45I	GTSAC	1 cut(s)	475
TspGWI	ACGGA	1 cut(s)	551
TspRI	CASTG	2 cut(s)	45, 228
Tth111I	GACNNNGTC	1 cut(s)	473
VpaK11BI	GGWCC	2 cut(s)	248, 538
XmnI	GAANNNNTTC	1 cut(s)	325
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.