AT5G02620

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0004020
Physical Location & Seq
Forward (+)
589199 .. 591752
2554 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02620.2

Sequence Viewer

Length: 1575 bp
ATGAAAGAGATCAAGAAGACGATGACGAAGCAGATGACGGCAAGACGTGACGACACGCCGTTACACACGGCGGTTAGAGAAGGCAAAACGGACCTTCTTTTGGAGATGATCGGAGAACACGACGGCGTGGAGCTGAAAGAGTTGTTGGCCGAGCAAAACCAGTCCGGTGAAACGGCTTTGTACGTTGCGGCTGAGTACGGTTACACCGACATGGTTAAGATTCTGATGAAACACTCCGACTCTGTCTTAGCCGGAACCAAAGCCAAGAACGGCTTCGATGCCTTTCACATCGCCGCCAAAAACGGAAATCTACAGGTTCTTGATGTGTTAATAGAGGCAAATCCAGAACTCTCATTTACATTTGATTCATCCAAAACCACGGCGCTTCATACCGCGGCTTCACAGGGTCATGGAGAGATTGTTTGTTTCTTGTTGGATAAAGGTGTGGACTTAGCTGCTATTGCGAGAAGCAATGGTAAAACCGCTTTGCACTCTGCAGCTAGGAACGGGCACACGGTGATTGTGAAGAAGTTGATTGAAAAGAAGGCTGGTATGGTTACAAGAGTCGACAAGAAAGGTCAAACCGCTCTTCATATGGCGGTTAAAGGACAAAACACTGAGATTGTGGATGTGTTGATGGAAGCAGATGGTTCGTTGATCAATTCCGCGGATAATAAAGGAAACACTCCATTGCATATAGCAGTCCGTAAAAACAGAGCAGAGATTGTTCAGACAGTTTTAAAGTATTGTGAAGTCAGTAGAGTGGCGGTTAATAAATCAGGAGAAACAGCTCTTGATATCGCTGAGAAAACCGGACTACATGAGATCGTACCGCTTCTGCAAAAGATCGGTATGCAGAACGCAAGATCCATCAAGCCAGCTGAAAAAGTGGAACCATCAGGCTCTTCTAGGAAACTGAAAGAAACAGTTAGTGAAATAGGCCATGAGGTGCATACTCAGCTTGAACAAACCGGGAGAACGAGAAGAGAGATCCAAGGAATCGCTAAACGGGTCAACAAAATGCACACGGAAGGACTCAACAACGCGATAAACTCCACTACCCTAGTAGCCATTCTCATAGCAACCGTTGCTTTTGCAGCTATCTTCAACGTTCCAGGCCAGTACACGGACGACCCTAAAGACGTACCTCCAGGATATTCACTCGGAGAAGCAAGAGCAGCTCCAAGACCCGAGTTCTTGATATTCGTCGTGTTTGATTCTTTCGCGCTTTTCATCTCTTTAGCGGTGGTTGTGGTTCAGACATCAGTGGTGGTTATAGAGAGGAGAGCAAAGAAGCAAATGATGGCTATAATCAACAAGCTCATGTGGATGGCTTGCATTATGATCTCAGTAGCGTTCGTATCACTGTCTTTTGTTGTCGTGGGAGAGAAAGAGAAGCCTTTGGCGGTTGGAGTAACCGCCATTGGAGCTTTGATCATGGTTTCAACACTAGGGACTATGTGTTATTGGGTGATTGCTAACCGGATTGAAGGATCTAAGTCATCTCCAGCTTCCATGATGTCAGATCCTGAGTTAGCTGATTCCAAACATAACCGGAAACTTTATGCGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

524

Amino Acids

56.92

Weight (kDa)

8.86

Isoelectric Point (pI)

32.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 16 - 78 1.1e-08 Ankyrin repeats (3 copies)
Ank_4 PF13637 60 - 111 8.8e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 87 - 151 1.5e-11 Ankyrin repeats (3 copies)
Ank_2 PF12796 95 - 183 1.3e-17 Ankyrin repeats (3 copies)
Ank_4 PF13637 96 - 145 4.8e-08 Ankyrin repeats (many copies)
Ank_4 PF13637 129 - 179 1.5e-08 Ankyrin repeats (many copies)
Ank_2 PF12796 157 - 221 4.2e-13 Ankyrin repeats (3 copies)
Ank_5 PF13857 188 - 234 8.4e-08 Ankyrin repeats (many copies)
Ank_2 PF12796 189 - 243 1.5e-10 Ankyrin repeats (3 copies)
Ank_4 PF13637 197 - 243 3.2e-06 Ankyrin repeats (many copies)
PGG PF13962 367 - 483 5.2e-29 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 587
AccI GTMKAC 1 cut(s) 567
AccII CGCG 4 cut(s) 395, 668, 1046, 1226
AclI AACGTT 1 cut(s) 1110
AclWI GGATC 4 cut(s) 861, 985, 1501, 1520
AcoI YGGCCR 1 cut(s) 147
AdeI CACNNNGTG 1 cut(s) 517
AfaI GTAC 5 cut(s) 182, 197, 831, 1124, 1146
AfiI CCNNNNNNNGG 2 cut(s) 100, 1126
AgsI TTSAA 5 cut(s) 539, 965, 1108, 1446, 1490
AjiI CACGTC 1 cut(s) 47
AjnI CCWGG 2 cut(s) 1114, 1150
AjuI GAANNNNNNNTTGG 4 cut(s) 128, 160, 257, 289
AloI GAACNNNNNNTCC 2 cut(s) 851, 883
AlwI GGATC 4 cut(s) 861, 985, 1501, 1520
AlwNI CAGNNNCTG 1 cut(s) 1529
Ama87I CYCGRG 1 cut(s) 1190
AoxI GGCC 3 cut(s) 147, 940, 1117
ApeKI GCWGC 4 cut(s) 455, 497, 1097, 1178
Asp700I GAANNNNTTC 1 cut(s) 272
AspLEI GCGC 2 cut(s) 385, 1228
AspS9I GGNCC 1 cut(s) 91
AsuC2I CCSGG 1 cut(s) 973
AsuHPI GGTGA 3 cut(s) 179, 529, 1483
AvaI CYCGRG 1 cut(s) 1190
AvaII GGWCC 1 cut(s) 91
BaeGI GKGCMC 1 cut(s) 513
BbsI GAAGAC 1 cut(s) 23
BbvI GCAGC 4 cut(s) 442, 509, 1109, 1190
BccI CCATC 6 cut(s) 631, 641, 878, 904, 1297, 1324
BceAI ACGGC 7 cut(s) 43, 54, 84, 139, 189, 286, 396
BcgI CGANNNNNNTGC 2 cut(s) 633, 667
BciT130I CCWGG 2 cut(s) 1116, 1152
BclI TGATCA 2 cut(s) 657, 1434
BcnI CCSGG 1 cut(s) 973
BfaI CTAG 4 cut(s) 501, 909, 1064, 1451
BfmI CTRYAG 2 cut(s) 311, 495
BfoI RGCGCY 1 cut(s) 386
BisI GCNGC 7 cut(s) 189, 294, 396, 456, 498, 1098, 1179
BlsI GCNGC 7 cut(s) 190, 295, 397, 457, 499, 1099, 1180
Bme1390I CCNGG 3 cut(s) 973, 1116, 1152
Bme18I GGWCC 1 cut(s) 91
BmeT110I CYCGRG 1 cut(s) 1190
BmgBI CACGTC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 2 cut(s) 256, 894
BmrFI CCNGG 3 cut(s) 973, 1116, 1152
BmsI GCATC 1 cut(s) 268
BpiI GAAGAC 1 cut(s) 23
BpmI CTGGAG 2 cut(s) 1134, 1491
BpuMI CCSGG 1 cut(s) 973
BsaJI CCNNGG 4 cut(s) 378, 393, 666, 994
BsaWI WCCGGW 4 cut(s) 164, 812, 1482, 1554
BsaXI ACNNNNNCTCC 2 cut(s) 405, 435
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 1126
Bse1I ACTGG 2 cut(s) 160, 1120
Bse3DI GCAATG 2 cut(s) 478, 689
BseBI CCWGG 2 cut(s) 1116, 1152
BseDI CCNNGG 4 cut(s) 378, 393, 666, 994
BseGI GGATG 3 cut(s) 368, 634, 1335
BseLI CCNNNNNNNGG 2 cut(s) 100, 1126
BseMI GCAATG 2 cut(s) 478, 689
BseMII CTCAG 6 cut(s) 183, 609, 795, 971, 1362, 1521
BseNI ACTGG 2 cut(s) 160, 1120
BseRI GAGGAG 1 cut(s) 1297
BseSI GKGCMC 1 cut(s) 513
BseXI GCAGC 4 cut(s) 442, 509, 1109, 1190
Bsh1236I CGCG 4 cut(s) 395, 668, 1046, 1226
BshFI GGCC 3 cut(s) 149, 942, 1119
BsiHKCI CYCGRG 1 cut(s) 1190
BsiSI CCGG 6 cut(s) 165, 252, 813, 972, 1483, 1555
BslFI GGGAC 1 cut(s) 1468
BslI CCNNNNNNNGG 2 cut(s) 100, 1126
BsmFI GGGAC 1 cut(s) 1468
BsnI GGCC 3 cut(s) 149, 942, 1119
BsoBI CYCGRG 1 cut(s) 1190
Bsp1286I GDGCHC 1 cut(s) 513
BspANI GGCC 3 cut(s) 149, 942, 1119
BspCNI CTCAG 6 cut(s) 184, 610, 796, 970, 1361, 1522
BspFNI CGCG 4 cut(s) 395, 668, 1046, 1226
BspLI GGNNCC 2 cut(s) 256, 894
BspMAI CTGCAG 1 cut(s) 499
BspPI GGATC 4 cut(s) 861, 985, 1501, 1520
BspQI GCTCTTC 2 cut(s) 594, 910
BsrBI CCGCTC 1 cut(s) 587
BsrDI GCAATG 2 cut(s) 478, 689
BsrI ACTGG 2 cut(s) 160, 1120
BssECI CCNNGG 4 cut(s) 378, 393, 666, 994
BssT1I CCWWGG 1 cut(s) 994
Bst2UI CCWGG 2 cut(s) 1116, 1152
Bst4CI ACNGT 6 cut(s) 200, 517, 736, 928, 1087, 1368
Bst6I CTCTTC 3 cut(s) 594, 910, 979
BstAPI GCANNNNNTGC 1 cut(s) 1088
BstC8I GCNNGC 2 cut(s) 879, 1336
BstDEI CTNAG 9 cut(s) 192, 247, 451, 618, 804, 957, 1348, 1497, 1530
BstDSI CCRYGG 3 cut(s) 378, 393, 666
BstF5I GGATG 3 cut(s) 368, 634, 1335
BstFNI CGCG 4 cut(s) 395, 668, 1046, 1226
BstH2I RGCGCY 1 cut(s) 386
BstHHI GCGC 2 cut(s) 385, 1228
BstMWI GCNNNNNNNGC 6 cut(s) 461, 958, 1088, 1097, 1178, 1427
BstNI CCWGG 2 cut(s) 1116, 1152
BstSCI CCNGG 3 cut(s) 971, 1114, 1150
BstSFI CTRYAG 2 cut(s) 311, 495
BstSLI GKGCMC 1 cut(s) 513
BstUI CGCG 4 cut(s) 395, 668, 1046, 1226
BstV1I GCAGC 4 cut(s) 442, 509, 1109, 1190
BstV2I GAAGAC 1 cut(s) 23
BstX2I RGATCY 4 cut(s) 866, 990, 1493, 1525
BstYI RGATCY 4 cut(s) 866, 990, 1493, 1525
BsuRI GGCC 3 cut(s) 149, 942, 1119
BtgI CCRYGG 3 cut(s) 378, 393, 666
BtgZI GCGATG 1 cut(s) 274
BtrI CACGTC 1 cut(s) 47
BtsCI GGATG 3 cut(s) 368, 634, 1335
BtsIMutI CAGTG 3 cut(s) 615, 1272, 1364
Cac8I GCNNGC 2 cut(s) 879, 1336
CaiI CAGNNNCTG 1 cut(s) 1529
CfoI GCGC 2 cut(s) 385, 1228
Cfr13I GGNCC 1 cut(s) 91
Cfr42I CCGCGG 2 cut(s) 396, 669
Csp6I GTAC 5 cut(s) 181, 196, 830, 1123, 1145
CviAII CATG 7 cut(s) 211, 410, 821, 944, 1324, 1438, 1516
CviQI GTAC 5 cut(s) 181, 196, 830, 1123, 1145
DdeI CTNAG 9 cut(s) 192, 247, 451, 618, 804, 957, 1348, 1497, 1530
DraI TTTAAA 1 cut(s) 741
DraIII CACNNNGTG 1 cut(s) 517
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 3 cut(s) 594, 910, 979
EarI CTCTTC 3 cut(s) 594, 910, 979
Eco130I CCWWGG 1 cut(s) 994
Eco32I GATATC 1 cut(s) 799
Eco47I GGWCC 1 cut(s) 91
Eco88I CYCGRG 1 cut(s) 1190
EcoRII CCWGG 2 cut(s) 1114, 1150
EcoRV GATATC 1 cut(s) 799
EcoT14I CCWWGG 1 cut(s) 994
ErhI CCWWGG 1 cut(s) 994
FaeI CATG 7 cut(s) 214, 413, 824, 947, 1327, 1441, 1519
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FaqI GGGAC 1 cut(s) 1468
FatI CATG 7 cut(s) 210, 409, 820, 943, 1323, 1437, 1515
FauNDI CATATG 1 cut(s) 594
FbaI TGATCA 2 cut(s) 657, 1434
FblI GTMKAC 1 cut(s) 567
Fnu4HI GCNGC 7 cut(s) 189, 294, 396, 456, 498, 1098, 1179
FokI GGATG 3 cut(s) 355, 641, 1342
Fsp4HI GCNGC 7 cut(s) 189, 294, 396, 456, 498, 1098, 1179
FspBI CTAG 4 cut(s) 501, 909, 1064, 1451
GlaI GCGC 2 cut(s) 384, 1227
GluI GCNGC 7 cut(s) 189, 294, 396, 456, 498, 1098, 1179
GsuI CTGGAG 2 cut(s) 1134, 1491
HaeII RGCGCY 1 cut(s) 386
HaeIII GGCC 3 cut(s) 149, 942, 1119
HapII CCGG 6 cut(s) 165, 252, 813, 972, 1483, 1555
HhaI GCGC 2 cut(s) 385, 1228
Hin1II CATG 7 cut(s) 214, 413, 824, 947, 1327, 1441, 1519
Hin6I GCGC 2 cut(s) 383, 1226
HinP1I GCGC 2 cut(s) 383, 1226
HincII GTYRAC 2 cut(s) 568, 1015
HindII GTYRAC 2 cut(s) 568, 1015
HinfI GANTC 8 cut(s) 220, 239, 365, 564, 999, 1035, 1217, 1541
HpaII CCGG 6 cut(s) 165, 252, 813, 972, 1483, 1555
HphI GGTGA 3 cut(s) 179, 529, 1483
Hpy166II GTNNAC 4 cut(s) 448, 568, 1015, 1125
Hpy188I TCNGA 7 cut(s) 113, 225, 238, 732, 1166, 1260, 1525
Hpy188III TCNNGA 7 cut(s) 13, 320, 344, 780, 794, 1198, 1529
Hpy8I GTNNAC 4 cut(s) 448, 568, 1015, 1125
Hpy99I CGWCG 2 cut(s) 125, 1211
HpyAV CCTTC 5 cut(s) 74, 104, 538, 1025, 1484
HpyCH4III ACNGT 6 cut(s) 200, 517, 736, 928, 1087, 1368
HpyCH4IV ACGT 4 cut(s) 46, 183, 1110, 1143
HpyCH4V TGCA 9 cut(s) 490, 497, 694, 841, 856, 952, 1024, 1097, 1338
HpyF10VI GCNNNNNNNGC 6 cut(s) 461, 958, 1088, 1097, 1178, 1427
HpyF3I CTNAG 9 cut(s) 192, 247, 451, 618, 804, 957, 1348, 1497, 1530
HpySE526I ACGT 4 cut(s) 46, 183, 1110, 1143
Hsp92II CATG 7 cut(s) 214, 413, 824, 947, 1327, 1441, 1519
HspAI GCGC 2 cut(s) 383, 1226
Ksp22I TGATCA 2 cut(s) 657, 1434
KspI CCGCGG 2 cut(s) 396, 669
LguI GCTCTTC 2 cut(s) 594, 910
LmnI GCTCC 3 cut(s) 130, 1186, 1427
Lsp1109I GCAGC 4 cut(s) 442, 509, 1109, 1190
LweI GCATC 1 cut(s) 268
MaeI CTAG 4 cut(s) 501, 909, 1064, 1451
MaeII ACGT 4 cut(s) 46, 183, 1110, 1143
MaeIII GTNAC 5 cut(s) 47, 60, 200, 556, 1414
MbiI CCGCTC 1 cut(s) 587
MboII GAAGA 6 cut(s) 28, 538, 581, 897, 996, 1096
MflI RGATCY 4 cut(s) 866, 990, 1493, 1525
MhlI GDGCHC 1 cut(s) 513
MluCI AATT 1 cut(s) 661
MlyI GAGTC 3 cut(s) 233, 573, 1029
MmeI TCCRAC 3 cut(s) 261, 414, 1390
MnlI CCTC 4 cut(s) 328, 940, 1158, 1275
MroXI GAANNNNTTC 1 cut(s) 272
MseI TTAA 5 cut(s) 216, 329, 603, 740, 771
MslI CAYNNNNRTG 2 cut(s) 209, 1328
MspA1I CMGCKG 3 cut(s) 395, 668, 881
MspI CCGG 6 cut(s) 165, 252, 813, 972, 1483, 1555
MspR9I CCNGG 3 cut(s) 973, 1116, 1152
MvaI CCWGG 2 cut(s) 1116, 1152
MvnI CGCG 4 cut(s) 395, 668, 1046, 1226
MwoI GCNNNNNNNGC 6 cut(s) 461, 958, 1088, 1097, 1178, 1427
NciI CCSGG 1 cut(s) 973
NdeI CATATG 1 cut(s) 594
NlaIII CATG 7 cut(s) 214, 413, 824, 947, 1327, 1441, 1519
NlaIV GGNNCC 2 cut(s) 256, 894
NmeAIII GCCGAG 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 47
PciSI GCTCTTC 2 cut(s) 594, 910
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 204
PdmI GAANNNNTTC 1 cut(s) 272
PfeI GAWTC 5 cut(s) 220, 365, 999, 1217, 1541
PflFI GACNNNGTC 1 cut(s) 242
PfoI TCCNGGA 1 cut(s) 1150
PkrI GCNGC 7 cut(s) 190, 295, 397, 457, 499, 1099, 1180
PleI GAGTC 3 cut(s) 233, 572, 1029
PpsI GAGTC 3 cut(s) 233, 572, 1029
Psp1406I AACGTT 1 cut(s) 1110
Psp6I CCWGG 2 cut(s) 1114, 1150
PspGI CCWGG 2 cut(s) 1114, 1150
PspN4I GGNNCC 2 cut(s) 256, 894
PspPI GGNCC 1 cut(s) 91
PstI CTGCAG 1 cut(s) 499
PstNI CAGNNNCTG 1 cut(s) 1529
PsuI RGATCY 4 cut(s) 866, 990, 1493, 1525
PsyI GACNNNGTC 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 881
RsaI GTAC 5 cut(s) 182, 197, 831, 1124, 1146
RsaNI GTAC 5 cut(s) 181, 196, 830, 1123, 1145
RseI CAYNNNNRTG 2 cut(s) 209, 1328
SacII CCGCGG 2 cut(s) 396, 669
SalI GTCGAC 1 cut(s) 566
SapI GCTCTTC 2 cut(s) 594, 910
SaqAI TTAA 5 cut(s) 216, 329, 603, 740, 771
SatI GCNGC 7 cut(s) 189, 294, 396, 456, 498, 1098, 1179
Sau96I GGNCC 1 cut(s) 91
SchI GAGTC 3 cut(s) 233, 573, 1029
ScrFI CCNGG 3 cut(s) 973, 1116, 1152
SduI GDGCHC 1 cut(s) 513
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 2 cut(s) 311, 495
Sfr303I CCGCGG 2 cut(s) 396, 669
SgrBI CCGCGG 2 cut(s) 396, 669
SinI GGWCC 1 cut(s) 91
SmiMI CAYNNNNRTG 2 cut(s) 209, 1328
Sse9I AATT 1 cut(s) 661
SspMI CTAG 4 cut(s) 501, 909, 1064, 1451
StyD4I CCNGG 3 cut(s) 971, 1114, 1150
StyI CCWWGG 1 cut(s) 994
TaaI ACNGT 6 cut(s) 200, 517, 736, 928, 1087, 1368
TaiI ACGT 4 cut(s) 49, 186, 1113, 1146
TaqI TCGA 2 cut(s) 276, 567
TasI AATT 1 cut(s) 661
TatI WGTACW 1 cut(s) 1122
TauI GCSGC 3 cut(s) 191, 296, 398
TfiI GAWTC 5 cut(s) 220, 365, 999, 1217, 1541
Tru1I TTAA 5 cut(s) 216, 329, 603, 740, 771
Tru9I TTAA 5 cut(s) 216, 329, 603, 740, 771
TscAI CASTG 3 cut(s) 622, 1272, 1371
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 4 cut(s) 455, 497, 1097, 1178
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 6 cut(s) 17, 242, 357, 377, 581, 1222
TspGWI ACGGA 5 cut(s) 104, 318, 695, 1043, 1142
TspRI CASTG 3 cut(s) 622, 1272, 1371
Tth111I GACNNNGTC 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 91
XmiI GTMKAC 1 cut(s) 567
XmnI GAANNNNTTC 1 cut(s) 272
XspI CTAG 4 cut(s) 501, 909, 1064, 1451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.