Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004020

Physical Location & Seq

Genomic Coordinates Reverse (-)

7031071 .. 7032217

Gene Structure 1147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0090300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGATGAAATTCAAGGTTGACTTCACGGGAGCCGGCAGCTCAGGCGGAAAAGACGACGACAAGCCTATACTGACCTTGGGCACGGCCAAGCTCAAAGTCGACGAGGAAAACAAAACAGCCACCTTCATAGTCGACCAGTCCAAGCTCCCTGCTCGTCCCTACAGCTCCGAGCCCGAACCGATCACCGTGGGCCCGGAAGACCCTACGGACTTGCGACAAGTCTTCCAGAAGGTGGAGACCACCGAAGGCATCATCAACAATGTGGTCAAGATGTTCGACGCTCTACTCACAAAAGGCCACGAGCGCGAGGCTGCGGAGATGCATGCTCAGATCGACCAGGGTCTCATGCCGGAGGTGGTGACCTACACAGGCGTCATGGAGGAGTACGCCGGCGCCGGCAAGACAGTGGATGTTCTCAAGGTGTACCAGCGCATGTTGGACTACGGGATCAACCCTAACAGCTATACTTACAGGGTTCTCATCAAGGCGCTGGCGGAAGATCCGGACTCGAAGTTTCTCGGAGATGCGAAGAAGTACCTGATGGAAATGATGGACGTGTGTTTGCGGCCCGATGCGGTTGCGTACACGGCTGTGTTTAAGGCGTTTGCTCGGCGGGAGAAGGCGGCGGAGGGGAGGAGGTTTTTGGAGGAGATGAAGGGGAAGGGGTTTGTGGCGGACGAGAAGGAAGTGAGGGAGGTTCTCAAGGGCAGAAGAGGACGTTTGGCTAAGAAAGTCATCAATCTTCTATTTGGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

252

Amino Acids

28.17

Weight (kDa)

6.78

Isoelectric Point (pI)

28.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	112 - 164	9.6e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	117 - 165	2.8e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02620 AT5G02620 AT5G02620 AT5G02620 AT5G02620
fragaria_vesca	FvH4_6g14691 FvH4_6g14691 FvH4_6g14691 FvH4_6g14691 FvH4_6g14691
malus_domestica	MD12G1132900.v1.1
prunus_persica	Prupe.6G246900_v2.0.a1 Prupe.6G246900_v2.0.a1 Prupe.6G246900_v2.0.a1 Prupe.6G246900_v2.0.a1 Prupe.6G246900_v2.0.a1 Prupe.6G246900_v2.0.a1 Prupe.6G246900_v2.0.a1 Prupe.6G246900_v2.0.a1 Prupe.6G246900_v2.0.a1
pyrus_communis	pycom04g10720 pycom12g12850
rosa_chinensis	RchiOBHm_Chr3g0467901
rosa_laevigata	RLG00000024469
rosa_multiflora	Rmu_sc0001793.1_g000045
rosa_roxburghii	Rroxscaffold_6G00413330
rosa_rugosa	Rorug03G0090300 Rorug03G0090400
rosa_samantha	Rh3AG138700 Rh3BG160200 Rh3CG160300 Rh3DG160900
rosa_wichuraiana	Rw3G013140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	232
AccI	GTMKAC	2 cut(s)	99, 132
AccII	CGCG	1 cut(s)	306
AccIII	TCCGGA	1 cut(s)	502
AciI	CCGC	9 cut(s)	45, 314, 494, 565, 575, 613, 623, 626, 674
AclWI	GGATC	2 cut(s)	455, 494
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	8
AcyI	GRCGYC	2 cut(s)	372, 393
AfaI	GTAC	4 cut(s)	386, 425, 536, 584
AfiI	CCNNNNNNNGG	1 cut(s)	232
AflIII	ACRYGT	1 cut(s)	555
AgsI	TTSAA	1 cut(s)	13
AjiI	CACGTC	1 cut(s)	556
AjnI	CCWGG	1 cut(s)	336
AleI	CACNNNNGTG	1 cut(s)	590
AluBI	AGCT	5 cut(s)	39, 91, 145, 165, 462
AluI	AGCT	5 cut(s)	39, 91, 145, 165, 462
Alw26I	GTCTC	2 cut(s)	230, 347
AlwI	GGATC	2 cut(s)	455, 494
Aor13HI	TCCGGA	1 cut(s)	502
AoxI	GGCC	4 cut(s)	84, 190, 295, 566
ApaI	GGGCCC	1 cut(s)	194
ApeKI	GCWGC	2 cut(s)	36, 311
ApoI	RAATTY	1 cut(s)	8
AspLEI	GCGC	4 cut(s)	306, 395, 432, 490
AspS9I	GGNCC	3 cut(s)	190, 191, 567
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	175, 370
BaeGI	GKGCMC	2 cut(s)	83, 194
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	2 cut(s)	174, 194
BauI	CACGAG	1 cut(s)	299
BbsI	GAAGAC	2 cut(s)	204, 214
BbvI	GCAGC	2 cut(s)	48, 298
BccI	CCATC	2 cut(s)	535, 544
BceAI	ACGGC	2 cut(s)	99, 603
BcgI	CGANNNNNNTGC	2 cut(s)	560, 594
BciT130I	CCWGG	1 cut(s)	338
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	2 cut(s)	230, 347
BfmI	CTRYAG	1 cut(s)	160
BfoI	RGCGCY	2 cut(s)	396, 491
BisI	GCNGC	4 cut(s)	37, 312, 566, 624
BlsI	GCNGC	4 cut(s)	38, 313, 567, 625
Bme1390I	CCNGG	2 cut(s)	194, 338
BmgBI	CACGTC	1 cut(s)	556
BmgT120I	GGNCC	3 cut(s)	190, 191, 567
BmiI	GGNNCC	3 cut(s)	31, 192, 394
BmrFI	CCNGG	2 cut(s)	194, 338
BmsI	GCATC	4 cut(s)	258, 309, 514, 562
BoxI	GACNNNNGTC	1 cut(s)	339
BpiI	GAAGAC	2 cut(s)	204, 214
Bpu10I	CCTNAGC	1 cut(s)	40
BpuEI	CTTGAG	2 cut(s)	401, 686
BpuMI	CCSGG	1 cut(s)	194
BsaHI	GRCGYC	2 cut(s)	372, 393
BsaI	GGTCTC	2 cut(s)	230, 347
BsaJI	CCNNGG	3 cut(s)	75, 186, 337
BsaWI	WCCGGW	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse118I	RCCGGY	3 cut(s)	32, 389, 395
Bse1I	ACTGG	1 cut(s)	136
BseAI	TCCGGA	1 cut(s)	502
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	3 cut(s)	75, 186, 337
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMII	CTCAG	2 cut(s)	54, 341
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	3 cut(s)	395, 649, 662
BseSI	GKGCMC	2 cut(s)	83, 194
BseXI	GCAGC	2 cut(s)	48, 298
Bsh1236I	CGCG	1 cut(s)	306
BshFI	GGCC	4 cut(s)	86, 192, 297, 568
BshNI	GGYRCC	1 cut(s)	392
BsiSI	CCGG	6 cut(s)	33, 194, 350, 390, 396, 503
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	2 cut(s)	230, 347
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	4 cut(s)	86, 192, 297, 568
Bso31I	GGTCTC	2 cut(s)	230, 347
Bsp120I	GGGCCC	1 cut(s)	190
Bsp1286I	GDGCHC	3 cut(s)	83, 174, 194
Bsp13I	TCCGGA	1 cut(s)	502
Bsp143I	GATC	4 cut(s)	180, 330, 447, 499
BspACI	CCGC	9 cut(s)	45, 314, 494, 565, 575, 613, 623, 626, 674
BspANI	GGCC	4 cut(s)	86, 192, 297, 568
BspCNI	CTCAG	2 cut(s)	53, 340
BspEI	TCCGGA	1 cut(s)	502
BspFNI	CGCG	1 cut(s)	306
BspLI	GGNNCC	3 cut(s)	31, 192, 394
BspPI	GGATC	2 cut(s)	455, 494
BspT107I	GGYRCC	1 cut(s)	392
BspTNI	GGTCTC	2 cut(s)	230, 347
BsrFI	RCCGGY	3 cut(s)	32, 389, 395
BsrI	ACTGG	1 cut(s)	136
BssAI	RCCGGY	3 cut(s)	32, 389, 395
BssECI	CCNNGG	3 cut(s)	75, 186, 337
BssMI	GATC	4 cut(s)	180, 330, 447, 499
BssNI	GRCGYC	2 cut(s)	372, 393
BssSI	CACGAG	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	2 cut(s)	187, 406
Bst6I	CTCTTC	1 cut(s)	706
BstACI	GRCGYC	2 cut(s)	372, 393
BstC8I	GCNNGC	5 cut(s)	34, 324, 391, 397, 492
BstDEI	CTNAG	3 cut(s)	40, 327, 726
BstDSI	CCRYGG	1 cut(s)	186
BstEII	GGTNACC	1 cut(s)	358
BstF5I	GGATG	1 cut(s)	415
BstFNI	CGCG	1 cut(s)	306
BstH2I	RGCGCY	2 cut(s)	396, 491
BstHHI	GCGC	4 cut(s)	306, 395, 432, 490
BstKTI	GATC	4 cut(s)	183, 333, 450, 502
BstMAI	GTCTC	2 cut(s)	230, 347
BstMBI	GATC	4 cut(s)	180, 330, 447, 499
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 303, 587
BstNI	CCWGG	1 cut(s)	338
BstNSI	RCATGY	2 cut(s)	326, 436
BstPAI	GACNNNNGTC	1 cut(s)	339
BstPI	GGTNACC	1 cut(s)	358
BstSCI	CCNGG	2 cut(s)	192, 336
BstSFI	CTRYAG	1 cut(s)	160
BstSLI	GKGCMC	2 cut(s)	83, 194
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	48, 298
BstV2I	GAAGAC	2 cut(s)	204, 214
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
BsuRI	GGCC	4 cut(s)	86, 192, 297, 568
BtgI	CCRYGG	1 cut(s)	186
BtrI	CACGTC	1 cut(s)	556
BtsCI	GGATG	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	5 cut(s)	34, 324, 391, 397, 492
CfoI	GCGC	4 cut(s)	306, 395, 432, 490
Cfr10I	RCCGGY	3 cut(s)	32, 389, 395
Cfr13I	GGNCC	3 cut(s)	190, 191, 567
CseI	GACGC	2 cut(s)	287, 361
Csp6I	GTAC	4 cut(s)	385, 424, 535, 583
CviAII	CATG	4 cut(s)	323, 346, 376, 433
CviQI	GTAC	4 cut(s)	385, 424, 535, 583
DdeI	CTNAG	3 cut(s)	40, 327, 726
DinI	GGCGCC	1 cut(s)	394
DpnI	GATC	4 cut(s)	182, 332, 449, 501
DpnII	GATC	4 cut(s)	180, 330, 447, 499
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	706
EarI	CTCTTC	1 cut(s)	706
EciI	GGCGGA	4 cut(s)	60, 509, 641, 689
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	2 cut(s)	174, 194
Eco31I	GGTCTC	2 cut(s)	230, 347
Eco91I	GGTNACC	1 cut(s)	358
EcoO65I	GGTNACC	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	75
EcoT22I	ATGCAT	1 cut(s)	324
EcoT38I	GRGCYC	2 cut(s)	174, 194
EgeI	GGCGCC	1 cut(s)	394
EheI	GGCGCC	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	4 cut(s)	326, 349, 379, 436
FaiI	YATR	7 cut(s)	68, 128, 324, 347, 377, 434, 465
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	4 cut(s)	322, 345, 375, 432
FauI	CCCGC	1 cut(s)	606
FblI	GTMKAC	2 cut(s)	99, 132
Fnu4HI	GCNGC	4 cut(s)	37, 312, 566, 624
FokI	GGATG	1 cut(s)	422
FriOI	GRGCYC	2 cut(s)	174, 194
Fsp4HI	GCNGC	4 cut(s)	37, 312, 566, 624
GlaI	GCGC	4 cut(s)	305, 394, 431, 489
GluI	GCNGC	4 cut(s)	37, 312, 566, 624
HaeII	RGCGCY	2 cut(s)	396, 491
HaeIII	GGCC	4 cut(s)	86, 192, 297, 568
HapII	CCGG	6 cut(s)	33, 194, 350, 390, 396, 503
HgaI	GACGC	2 cut(s)	287, 361
HhaI	GCGC	4 cut(s)	306, 395, 432, 490
Hin1I	GRCGYC	2 cut(s)	372, 393
Hin1II	CATG	4 cut(s)	326, 349, 379, 436
Hin6I	GCGC	4 cut(s)	304, 393, 430, 488
HinP1I	GCGC	4 cut(s)	304, 393, 430, 488
HincII	GTYRAC	3 cut(s)	19, 100, 133
HindII	GTYRAC	3 cut(s)	19, 100, 133
HinfI	GANTC	1 cut(s)	506
HpaII	CCGG	6 cut(s)	33, 194, 350, 390, 396, 503
HphI	GGTGA	2 cut(s)	175, 370
Hpy166II	GTNNAC	5 cut(s)	19, 100, 133, 424, 585
Hpy188I	TCNGA	3 cut(s)	169, 330, 521
Hpy188III	TCNNGA	3 cut(s)	226, 268, 503
Hpy8I	GTNNAC	5 cut(s)	19, 100, 133, 424, 585
Hpy99I	CGWCG	3 cut(s)	59, 104, 281
HpyAV	CCTTC	7 cut(s)	133, 223, 239, 613, 649, 655, 676
HpyCH4III	ACNGT	2 cut(s)	187, 406
HpyCH4IV	ACGT	2 cut(s)	555, 718
HpyCH4V	TGCA	1 cut(s)	322
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 303, 587
HpyF3I	CTNAG	3 cut(s)	40, 327, 726
HpySE526I	ACGT	2 cut(s)	555, 718
Hsp92I	GRCGYC	2 cut(s)	372, 393
Hsp92II	CATG	4 cut(s)	326, 349, 379, 436
HspAI	GCGC	4 cut(s)	304, 393, 430, 488
KasI	GGCGCC	1 cut(s)	392
Kpn2I	TCCGGA	1 cut(s)	502
KroI	GCCGGC	3 cut(s)	32, 389, 395
KroNI	GCCGGC	3 cut(s)	34, 391, 397
Kzo9I	GATC	4 cut(s)	180, 330, 447, 499
LmnI	GCTCC	3 cut(s)	29, 150, 170
Lsp1109I	GCAGC	2 cut(s)	48, 298
LweI	GCATC	4 cut(s)	258, 309, 514, 562
MaeII	ACGT	2 cut(s)	555, 718
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	4 cut(s)	182, 332, 449, 501
MboI	GATC	4 cut(s)	180, 330, 447, 499
MboII	GAAGA	6 cut(s)	209, 214, 509, 541, 723, 734
MflI	RGATCY	1 cut(s)	499
MhlI	GDGCHC	3 cut(s)	83, 174, 194
MluCI	AATT	1 cut(s)	8
Mly113I	GGCGCC	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	500
MmeI	TCCRAC	1 cut(s)	417
Mph1103I	ATGCAT	1 cut(s)	324
MreI	CGCCGGCG	1 cut(s)	389
MroI	TCCGGA	1 cut(s)	502
MroNI	GCCGGC	3 cut(s)	32, 389, 395
MseI	TTAA	1 cut(s)	597
MslI	CAYNNNNRTG	1 cut(s)	590
MspI	CCGG	6 cut(s)	33, 194, 350, 390, 396, 503
MspR9I	CCNGG	2 cut(s)	194, 338
MvaI	CCWGG	1 cut(s)	338
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	3 cut(s)	42, 303, 587
NaeI	GCCGGC	3 cut(s)	34, 391, 397
NarI	GGCGCC	1 cut(s)	393
NciI	CCSGG	1 cut(s)	194
NdeII	GATC	4 cut(s)	180, 330, 447, 499
NgoMIV	GCCGGC	3 cut(s)	32, 389, 395
NlaIII	CATG	4 cut(s)	326, 349, 379, 436
NlaIV	GGNNCC	3 cut(s)	31, 192, 394
NmeAIII	GCCGAG	1 cut(s)	589
NmuCI	GTSAC	1 cut(s)	358
NsiI	ATGCAT	1 cut(s)	324
NspI	RCATGY	2 cut(s)	326, 436
OliI	CACNNNNGTG	1 cut(s)	590
PaeI	GCATGC	1 cut(s)	326
PdiI	GCCGGC	3 cut(s)	34, 391, 397
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	4 cut(s)	38, 313, 567, 625
PleI	GAGTC	1 cut(s)	500
PluTI	GGCGCC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	500
PshAI	GACNNNNGTC	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	336
PspEI	GGTNACC	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	3 cut(s)	31, 192, 394
PspOMI	GGGCCC	1 cut(s)	190
PspPI	GGNCC	3 cut(s)	190, 191, 567
PsuI	RGATCY	1 cut(s)	499
RsaI	GTAC	4 cut(s)	386, 425, 536, 584
RsaNI	GTAC	4 cut(s)	385, 424, 535, 583
RseI	CAYNNNNRTG	1 cut(s)	590
SalI	GTCGAC	2 cut(s)	98, 131
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	4 cut(s)	37, 312, 566, 624
Sau3AI	GATC	4 cut(s)	180, 330, 447, 499
Sau96I	GGNCC	3 cut(s)	190, 191, 567
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	2 cut(s)	194, 338
SduI	GDGCHC	3 cut(s)	83, 174, 194
SfaNI	GCATC	4 cut(s)	258, 309, 514, 562
SfcI	CTRYAG	1 cut(s)	160
SfoI	GGCGCC	1 cut(s)	394
SgrAI	CRCCGGYG	1 cut(s)	389
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	2 cut(s)	416, 701
SmoI	CTYRAG	2 cut(s)	416, 701
SphI	GCATGC	1 cut(s)	326
Sse9I	AATT	1 cut(s)	8
SsiI	CCGC	9 cut(s)	45, 314, 494, 565, 575, 613, 623, 626, 674
SspDI	GGCGCC	1 cut(s)	392
StyD4I	CCNGG	2 cut(s)	192, 336
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	187, 406
TaiI	ACGT	2 cut(s)	558, 721
TaqI	TCGA	5 cut(s)	99, 132, 276, 333, 509
TasI	AATT	1 cut(s)	8
TauI	GCSGC	2 cut(s)	568, 626
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	1 cut(s)	411
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	2 cut(s)	36, 311
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	3 cut(s)	20, 115, 668
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	411
Van91I	CCANNNNNTGG	1 cut(s)	232
XapI	RAATTY	1 cut(s)	8
XceI	RCATGY	2 cut(s)	326, 436
XmiI	GTMKAC	2 cut(s)	99, 132
Zsp2I	ATGCAT	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.