Rorug03G0090400

ankyrin repeat-containing protein At5g02620-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004020
Physical Location & Seq
Reverse (-)
7043085 .. 7044394
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0090400.1

Sequence Viewer

Length: 933 bp
ATGGCCGCCAGATTGGTATCTCGCTCCTCTCTTCACAACCAATCCAATCCCTTCTCCCTTTTCTTCACCAAGCTTCACACCACCATAGCTCCAATCAACCACACCCACAAACTCATCTCTTTCTCTTCTTCTTCTTCTTCTTCTCCTTCATCCACAACAACCCATAACAGCAGGGCTCTTCTTCCTCCGCCATCATTCTCTTCTTTTCGCCTCTTCAGCTCCTCCGAACCCAACACCAAACGCTCCACCCTCGTCAATTTCTCCCTTCCCTCCGACGACGAAGACGACGACGCCGATCAGAAACCAAACGACAAGTCGTCGTCGTCGTCGTCCCTCCCTCCTCCCTACGACCCATTCAACAAGAAGCCGGCGATCGAAGACCCAAAAGACTTGCAGGAAGTGTTCCACAAGATGCGAACAGATGGGCTCCAAAACAATGCAGTCAAGATGTTCGACGCTTTGTCCAAGGACGGCCTCACCCACGAGGCCTTGGAGCTCTTCGCGCAGATCAAAGACAAGGGCCACATGCCCGACGTGGTGGCCCACACCGCCGTCATCGAGGCCTACGCCGCCGCCGCAAAGCCCAAGGACGCTCTCAAGGTGTACATGCGGATGTTGGCGTGTGGGGTTGCACCAAATGCCTACACTTATAGCGTGCTCATCAAGGCACTCGCTTCCGACGCCAGTTTCGTTGGGGATGCGAAGAAGTATCTGATGGAGATGATGGGGAAGGGAATGCGGCCCAATGCCGGGACGTACGTGGCGGTGTTTGAGGCGTTTGCGGCCGAGGAGAGGGTGGAGGAGGGGAGGGAGTTGCTGGAGGAGATGAAAGGGAAGGGGTTCGTGGCGGATGAGAAGGCGGTGAGGGAGGTGGTCAAGGGTAGAAGAGGAGCTGTGGTTAGAAGTGTCATCAACCTTCTCTTTGGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

310

Amino Acids

33.94

Weight (kDa)

8.44

Isoelectric Point (pI)

54.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 155 - 289 1.3e-07 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 156 - 242 6.3e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 166 - 224 9.2e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 177 - 225 7e-13 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 503
AcoI YGGCCR 2 cut(s) 3, 783
AcuI CTGAAG 1 cut(s) 199
AcyI GRCGYC 2 cut(s) 291, 681
AfaI GTAC 2 cut(s) 605, 758
AfiI CCNNNNNNNGG 3 cut(s) 749, 750, 792
AgsI TTSAA 1 cut(s) 358
AhdI GACNNNNNGTC 2 cut(s) 316, 460
AjiI CACGTC 1 cut(s) 535
AluBI AGCT 5 cut(s) 73, 89, 219, 496, 893
AluI AGCT 5 cut(s) 73, 89, 219, 496, 893
Alw21I GWGCWC 2 cut(s) 498, 660
AoxI GGCC 8 cut(s) 3, 472, 486, 520, 540, 561, 740, 783
ArsI GACNNNNNNTTYG 4 cut(s) 299, 331, 671, 703
Asp700I GAANNNNTTC 1 cut(s) 839
AspLEI GCGC 1 cut(s) 505
AspS9I GGNCC 3 cut(s) 520, 541, 741
AsuC2I CCSGG 1 cut(s) 751
AsuHPI GGTGA 3 cut(s) 58, 469, 874
BanII GRGCYC 3 cut(s) 178, 429, 498
BauI CACGAG 1 cut(s) 482
BbsI GAAGAC 2 cut(s) 288, 384
Bbv12I GWGCWC 2 cut(s) 498, 660
BccI CCATC 4 cut(s) 199, 416, 709, 718
BceAI ACGGC 2 cut(s) 487, 536
BcnI CCSGG 1 cut(s) 751
BisI GCNGC 6 cut(s) 6, 570, 573, 576, 740, 783
BlsI GCNGC 6 cut(s) 7, 571, 574, 577, 741, 784
Bme1390I CCNGG 1 cut(s) 751
BmeRI GACNNNNNGTC 2 cut(s) 316, 460
BmgBI CACGTC 1 cut(s) 535
BmgT120I GGNCC 3 cut(s) 520, 541, 741
BmiI GGNNCC 1 cut(s) 428
BmrFI CCNGG 1 cut(s) 751
BmsI GCATC 2 cut(s) 402, 688
BpiI GAAGAC 2 cut(s) 288, 384
BpmI CTGGAG 1 cut(s) 839
BpuEI CTTGAG 1 cut(s) 581
BpuMI CCSGG 1 cut(s) 751
BsaAI YACGTR 1 cut(s) 760
BsaBI GATNNNNATC 1 cut(s) 16
BsaHI GRCGYC 2 cut(s) 291, 681
BsaJI CCNNGG 4 cut(s) 465, 489, 585, 786
BsaXI ACNNNNNCTCC 4 cut(s) 73, 103, 882, 912
Bsc4I CCNNNNNNNGG 3 cut(s) 749, 750, 792
Bse118I RCCGGY 1 cut(s) 367
Bse1I ACTGG 1 cut(s) 684
Bse8I GATNNNNATC 1 cut(s) 16
BseDI CCNNGG 4 cut(s) 465, 489, 585, 786
BseGI GGATG 4 cut(s) 149, 618, 703, 856
BseJI GATNNNNATC 1 cut(s) 16
BseLI CCNNNNNNNGG 3 cut(s) 749, 750, 792
BseNI ACTGG 1 cut(s) 684
BseRI GAGGAG 7 cut(s) 16, 211, 330, 803, 815, 836, 903
BseX3I CGGCCG 1 cut(s) 783
Bsh1236I CGCG 1 cut(s) 503
Bsh1285I CGRYCG 2 cut(s) 375, 786
BshFI GGCC 8 cut(s) 5, 474, 488, 522, 542, 563, 742, 785
BsiEI CGRYCG 2 cut(s) 375, 786
BsiHKAI GWGCWC 2 cut(s) 498, 660
BsiSI CCGG 2 cut(s) 368, 750
BsiWI CGTACG 1 cut(s) 756
BslFI GGGAC 2 cut(s) 316, 766
BslI CCNNNNNNNGG 3 cut(s) 749, 750, 792
BsmFI GGGAC 2 cut(s) 316, 766
BsmI GAATGC 1 cut(s) 741
BsnI GGCC 8 cut(s) 5, 474, 488, 522, 542, 563, 742, 785
Bsp1286I GDGCHC 4 cut(s) 178, 429, 498, 660
Bsp1407I TGTACA 1 cut(s) 603
Bsp143I GATC 3 cut(s) 295, 372, 507
BspANI GGCC 8 cut(s) 5, 474, 488, 522, 542, 563, 742, 785
BspFNI CGCG 1 cut(s) 503
BspLI GGNNCC 1 cut(s) 428
BspQI GCTCTTC 2 cut(s) 183, 503
BsrFI RCCGGY 1 cut(s) 367
BsrGI TGTACA 1 cut(s) 603
BsrI ACTGG 1 cut(s) 684
BssAI RCCGGY 1 cut(s) 367
BssECI CCNNGG 4 cut(s) 465, 489, 585, 786
BssMI GATC 3 cut(s) 295, 372, 507
BssNI GRCGYC 2 cut(s) 291, 681
BssSI CACGAG 1 cut(s) 482
BssT1I CCWWGG 3 cut(s) 465, 489, 585
Bst2BI CACGAG 1 cut(s) 482
Bst6I CTCTTC 7 cut(s) 36, 130, 183, 205, 218, 503, 880
BstACI GRCGYC 2 cut(s) 291, 681
BstAPI GCANNNNNTGC 1 cut(s) 638
BstAUI TGTACA 1 cut(s) 603
BstBAI YACGTR 1 cut(s) 760
BstC8I GCNNGC 2 cut(s) 369, 656
BstF5I GGATG 4 cut(s) 149, 618, 703, 856
BstFNI CGCG 1 cut(s) 503
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 3 cut(s) 298, 375, 510
BstMBI GATC 3 cut(s) 295, 372, 507
BstMCI CGRYCG 2 cut(s) 375, 786
BstMWI GCNNNNNNNGC 8 cut(s) 216, 502, 548, 569, 575, 638, 680, 782
BstNSI RCATGY 2 cut(s) 529, 610
BstSCI CCNGG 1 cut(s) 749
BstUI CGCG 1 cut(s) 503
BstV2I GAAGAC 2 cut(s) 288, 384
BstZI CGGCCG 1 cut(s) 783
BsuRI GGCC 8 cut(s) 5, 474, 488, 522, 542, 563, 742, 785
BtrI CACGTC 1 cut(s) 535
BtsCI GGATG 4 cut(s) 149, 618, 703, 856
Cac8I GCNNGC 2 cut(s) 369, 656
CfoI GCGC 1 cut(s) 505
Cfr10I RCCGGY 1 cut(s) 367
Cfr13I GGNCC 3 cut(s) 520, 541, 741
CseI GACGC 4 cut(s) 299, 464, 599, 689
Csp6I GTAC 2 cut(s) 604, 757
CviAII CATG 2 cut(s) 526, 607
CviQI GTAC 2 cut(s) 604, 757
DpnI GATC 3 cut(s) 297, 374, 509
DpnII GATC 3 cut(s) 295, 372, 507
DriI GACNNNNNGTC 2 cut(s) 316, 460
EaeI YGGCCR 2 cut(s) 3, 783
EagI CGGCCG 1 cut(s) 783
Eam1104I CTCTTC 7 cut(s) 36, 130, 183, 205, 218, 503, 880
Eam1105I GACNNNNNGTC 2 cut(s) 316, 460
EarI CTCTTC 7 cut(s) 36, 130, 183, 205, 218, 503, 880
EciI GGCGGA 2 cut(s) 177, 863
Ecl136II GAGCTC 1 cut(s) 496
EclXI CGGCCG 1 cut(s) 783
Eco130I CCWWGG 3 cut(s) 465, 489, 585
Eco147I AGGCCT 2 cut(s) 488, 563
Eco24I GRGCYC 3 cut(s) 178, 429, 498
Eco52I CGGCCG 1 cut(s) 783
Eco53kI GAGCTC 1 cut(s) 496
Eco57I CTGAAG 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 496
EcoT14I CCWWGG 3 cut(s) 465, 489, 585
EcoT38I GRGCYC 3 cut(s) 178, 429, 498
ErhI CCWWGG 3 cut(s) 465, 489, 585
FaeI CATG 2 cut(s) 529, 610
FaiI YATR 5 cut(s) 86, 165, 527, 608, 651
FaqI GGGAC 2 cut(s) 316, 766
FatI CATG 2 cut(s) 525, 606
Fnu4HI GCNGC 6 cut(s) 6, 570, 573, 576, 740, 783
FokI GGATG 4 cut(s) 136, 625, 710, 863
FriOI GRGCYC 3 cut(s) 178, 429, 498
Fsp4HI GCNGC 6 cut(s) 6, 570, 573, 576, 740, 783
GlaI GCGC 1 cut(s) 504
GluI GCNGC 6 cut(s) 6, 570, 573, 576, 740, 783
GsuI CTGGAG 1 cut(s) 839
HaeIII GGCC 8 cut(s) 5, 474, 488, 522, 542, 563, 742, 785
HapII CCGG 2 cut(s) 368, 750
HgaI GACGC 4 cut(s) 299, 464, 599, 689
HhaI GCGC 1 cut(s) 505
Hin1I GRCGYC 2 cut(s) 291, 681
Hin1II CATG 2 cut(s) 529, 610
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HindIII AAGCTT 1 cut(s) 71
HpaII CCGG 2 cut(s) 368, 750
HphI GGTGA 3 cut(s) 58, 469, 874
Hpy166II GTNNAC 1 cut(s) 604
Hpy188I TCNGA 5 cut(s) 226, 274, 300, 679, 714
Hpy188III TCNNGA 1 cut(s) 445
Hpy8I GTNNAC 1 cut(s) 604
HpyAV CCTTC 7 cut(s) 61, 156, 275, 724, 829, 850, 926
HpyCH4IV ACGT 3 cut(s) 534, 755, 759
HpyCH4V TGCA 3 cut(s) 394, 440, 632
HpyF10VI GCNNNNNNNGC 8 cut(s) 216, 502, 548, 569, 575, 638, 680, 782
HpySE526I ACGT 3 cut(s) 534, 755, 759
Hsp92I GRCGYC 2 cut(s) 291, 681
Hsp92II CATG 2 cut(s) 529, 610
HspAI GCGC 1 cut(s) 503
KroI GCCGGC 1 cut(s) 367
KroNI GCCGGC 1 cut(s) 369
Kzo9I GATC 3 cut(s) 295, 372, 507
LguI GCTCTTC 2 cut(s) 183, 503
LmnI GCTCC 7 cut(s) 29, 94, 224, 248, 432, 493, 890
LpnPI CCDG 7 cut(s) 22, 157, 380, 381, 697, 763, 803
LweI GCATC 2 cut(s) 402, 688
MaeII ACGT 3 cut(s) 534, 755, 759
MalI GATC 3 cut(s) 297, 374, 509
MboI GATC 3 cut(s) 295, 372, 507
MhlI GDGCHC 4 cut(s) 178, 429, 498, 660
MluCI AATT 1 cut(s) 256
MmeI TCCRAC 2 cut(s) 297, 702
MroNI GCCGGC 1 cut(s) 367
MroXI GAANNNNTTC 1 cut(s) 839
MslI CAYNNNNRTG 1 cut(s) 611
MspI CCGG 2 cut(s) 368, 750
MspR9I CCNGG 1 cut(s) 751
Mva1269I GAATGC 1 cut(s) 741
MvnI CGCG 1 cut(s) 503
MwoI GCNNNNNNNGC 8 cut(s) 216, 502, 548, 569, 575, 638, 680, 782
NaeI GCCGGC 1 cut(s) 369
NciI CCSGG 1 cut(s) 751
NdeII GATC 3 cut(s) 295, 372, 507
NgoMIV GCCGGC 1 cut(s) 367
NlaIII CATG 2 cut(s) 529, 610
NlaIV GGNNCC 1 cut(s) 428
NmeAIII GCCGAG 1 cut(s) 811
NspI RCATGY 2 cut(s) 529, 610
PceI AGGCCT 2 cut(s) 488, 563
PciSI GCTCTTC 2 cut(s) 183, 503
PcsI WCGNNNNNNNCGW 6 cut(s) 282, 285, 291, 323, 326, 687
PctI GAATGC 1 cut(s) 741
PdiI GCCGGC 1 cut(s) 369
PdmI GAANNNNTTC 1 cut(s) 839
Pfl23II CGTACG 1 cut(s) 756
PkrI GCNGC 6 cut(s) 7, 571, 574, 577, 741, 784
Ple19I CGATCG 1 cut(s) 375
Ppu21I YACGTR 1 cut(s) 760
Psp124BI GAGCTC 1 cut(s) 498
PspLI CGTACG 1 cut(s) 756
PspN4I GGNNCC 1 cut(s) 428
PspPI GGNCC 3 cut(s) 520, 541, 741
PvuI CGATCG 1 cut(s) 375
RsaI GTAC 2 cut(s) 605, 758
RsaNI GTAC 2 cut(s) 604, 757
RseI CAYNNNNRTG 1 cut(s) 611
SacI GAGCTC 1 cut(s) 498
SapI GCTCTTC 2 cut(s) 183, 503
SatI GCNGC 6 cut(s) 6, 570, 573, 576, 740, 783
Sau3AI GATC 3 cut(s) 295, 372, 507
Sau96I GGNCC 3 cut(s) 520, 541, 741
ScrFI CCNGG 1 cut(s) 751
SduI GDGCHC 4 cut(s) 178, 429, 498, 660
SfaNI GCATC 2 cut(s) 402, 688
SmiMI CAYNNNNRTG 1 cut(s) 611
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
Sse9I AATT 1 cut(s) 256
SseBI AGGCCT 2 cut(s) 488, 563
SstI GAGCTC 1 cut(s) 498
StuI AGGCCT 2 cut(s) 488, 563
StyD4I CCNGG 1 cut(s) 749
StyI CCWWGG 3 cut(s) 465, 489, 585
TaiI ACGT 3 cut(s) 537, 758, 762
TaqI TCGA 3 cut(s) 375, 453, 558
TasI AATT 1 cut(s) 256
TatI WGTACW 1 cut(s) 603
TauI GCSGC 6 cut(s) 8, 572, 575, 578, 742, 785
TspDTI ATGAA 2 cut(s) 138, 842
XceI RCATGY 2 cut(s) 529, 610
XmnI GAANNNNTTC 1 cut(s) 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.