Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001793.1

Orthogroup ID

OG0004020

Physical Location & Seq

Genomic Coordinates Forward (+)

198840 .. 200966

Gene Structure 2127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001793.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

atgacaaagcagttgacagggaagcgcgaagatgcccccttgcatttggcagcaagagcaggaaatttgggattggtgttagaaatcatctcaaatgttggggatgcagagttgaatgaagtgttgatgaagcagaatcactcgggtgaaaccgccttgtatgtggcggctgagtgtggctatgttgatttggtgaaggaaatgatcaagtactgtgatgttggtttagctagcatcaaagctagaaatggctgtgatgcatttcacattgcttccaagcaaggtcacttggaggtattgaaggttctcatgaaggcaataccagaactttcaatgactgttgatcaaacaaacaccacagcgttgcacgccgcagcagcgcagggtcacattgaagtagtaaatttccttttggagaatggttgcagcttgctgaccatagcaagaagcaatgcaaaaacggcctttcattctgcagcaagaaatgggcatttagatgtcgtcaaggcactcttgagaaaaggacctgaaattgcaacgagaaaggataagaaggggcagacagctctccatatggcagttaagggacagaatgttgagctggtggatgagttagcaaaagcggatccttctatgataaatatgatggataacaagggcaacactgccttgcatatagcaacccggaagggtcgagctcagattgttcagcagctgttgggttataagggaattgccacaagtaccattaacaactctggtgaaactgttcttgacactgcacagaaaaatgggcaatctgtgattgctgccattctagaagagaaaggcattcaaagtgccaaatccatgaaaccaccaaccataatcgcaaaccgagagctcaaacaaactgtcagtgacataaaacatgaggtgcatgaccagatcaagcaaacacgacatacacgaaagcaagtacatggaatggtaaaacggctgagcaaaatgcactcagatgggcttaacaacgcaataaactccaccactgttgtggctgtcctcattgccaccgttgcctttgctgcaattttcactgtcccaggccaataccccaatgaccaggataatcttccacctggatactctcctggagaagcaaacattgccccaaaagccgggttcatagtcttcttcatctttgattcttttgcactcttcatatcattggctgtagtggtggttcagacttctattgttgttatagagaggaagcaaaaagagaaactgatgacagttataaacaagctgatgtggatggcttgtgtgatggtttcggttgcatttcttgcactgtcttatgtaatcgtcggagagaaagagaaatggttggctgttggagtaacaggcataggtacagtgattatgggaatgacattgggaacaatgtgttattggatggttgtgcagagaattgaggcttcaaaacttcgtagcatcactcggagatcatcaatgagcactaggtcacactcacattctgggtctttctcagtgatgtcagactctgagcttataaacactgagtttaagaagaagaaagtgtatgcaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

531

Amino Acids

57.76

Weight (kDa)

9.37

Isoelectric Point (pI)

32.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02620 AT5G02620 AT5G02620 AT5G02620 AT5G02620
fragaria_vesca	FvH4_6g14691 FvH4_6g14691 FvH4_6g14691 FvH4_6g14691 FvH4_6g14691
malus_domestica	MD12G1132900.v1.1
prunus_persica	Prupe.6G246900_v2.0.a1 Prupe.6G246900_v2.0.a1 Prupe.6G246900_v2.0.a1 Prupe.6G246900_v2.0.a1 Prupe.6G246900_v2.0.a1 Prupe.6G246900_v2.0.a1 Prupe.6G246900_v2.0.a1 Prupe.6G246900_v2.0.a1 Prupe.6G246900_v2.0.a1
pyrus_communis	pycom04g10720 pycom12g12850
rosa_chinensis	RchiOBHm_Chr3g0467901
rosa_laevigata	RLG00000024469
rosa_multiflora	Rmu_sc0001793.1_g000045
rosa_roxburghii	Rroxscaffold_6G00413330
rosa_rugosa	Rorug03G0090300 Rorug03G0090400
rosa_samantha	Rh3AG138700 Rh3BG160200 Rh3CG160300 Rh3DG160900
rosa_wichuraiana	Rw3G013140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	726, 1280, 1556
AccII	CGCG	1 cut(s)	27
AciI	CCGC	4 cut(s)	153, 167, 372, 623
AclWI	GGATC	2 cut(s)	620, 633
AcsI	RAATTY	2 cut(s)	64, 403
AfaI	GTAC	4 cut(s)	212, 745, 960, 1396
AfiI	CCNNNNNNNGG	1 cut(s)	1157
AgsI	TTSAA	6 cut(s)	115, 301, 333, 395, 836, 1464
AjnI	CCWGG	4 cut(s)	1081, 1101, 1117, 1129
AleI	CACNNNNGTG	2 cut(s)	144, 1031
Alw21I	GWGCWC	3 cut(s)	700, 885, 1502
AlwI	GGATC	2 cut(s)	620, 633
AlwNI	CAGNNNCTG	2 cut(s)	715, 1547
Ama87I	CYCGRG	1 cut(s)	142
AoxI	GGCC	2 cut(s)	462, 1084
ApeKI	GCWGC	8 cut(s)	50, 374, 377, 426, 476, 712, 809, 1064
ApoI	RAATTY	2 cut(s)	64, 403
ArsI	GACNNNNNNTTYG	2 cut(s)	879, 911
Asp700I	GAANNNNTTC	1 cut(s)	768
AspLEI	GCGC	2 cut(s)	27, 382
AspS9I	GGNCC	1 cut(s)	524
AsuC2I	CCSGG	2 cut(s)	685, 1159
AsuHPI	GGTGA	3 cut(s)	158, 205, 773
AsuNHI	GCTAGC	1 cut(s)	230
AvaI	CYCGRG	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	524
BamHI	GGATCC	1 cut(s)	625
BanII	GRGCYC	2 cut(s)	700, 885
BbsI	GAAGAC	1 cut(s)	1162
Bbv12I	GWGCWC	3 cut(s)	700, 885, 1502
BbvI	GCAGC	8 cut(s)	62, 386, 389, 438, 488, 724, 796, 1051
BccI	CCATC	5 cut(s)	640, 992, 1291, 1303, 1432
BceAI	ACGGC	2 cut(s)	477, 992
BciT130I	CCWGG	4 cut(s)	1083, 1103, 1119, 1131
BciVI	GTATCC	1 cut(s)	1115
BclI	TGATCA	2 cut(s)	204, 343
BcnI	CCSGG	2 cut(s)	685, 1159
BfaI	CTAG	4 cut(s)	231, 243, 818, 1503
BfmI	CTRYAG	2 cut(s)	474, 1212
BfuI	GTATCC	1 cut(s)	1115
BlpI	GCTNAGC	1 cut(s)	980
BmcAI	AGTACT	1 cut(s)	212
Bme1390I	CCNGG	6 cut(s)	685, 1083, 1103, 1119, 1131, 1159
Bme18I	GGWCC	1 cut(s)	524
BmeT110I	CYCGRG	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	524
BmiI	GGNNCC	1 cut(s)	627
BmrFI	CCNGG	6 cut(s)	685, 1083, 1103, 1119, 1131, 1159
BmsI	GCATC	5 cut(s)	22, 94, 243, 247, 1485
BmtI	GCTAGC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	1162
BpmI	CTGGAG	1 cut(s)	1152
Bpu1102I	GCTNAGC	1 cut(s)	980
BpuEI	CTTGAG	1 cut(s)	535
BpuMI	CCSGG	2 cut(s)	685, 1159
BsaJI	CCNNGG	1 cut(s)	1081
Bsc4I	CCNNNNNNNGG	1 cut(s)	1157
Bse3DI	GCAATG	4 cut(s)	267, 457, 1044, 1143
BseBI	CCWGG	4 cut(s)	1083, 1103, 1119, 1131
BseDI	CCNNGG	1 cut(s)	1081
BseGI	GGATG	4 cut(s)	109, 613, 1302, 1443
BseLI	CCNNNNNNNGG	1 cut(s)	1157
BseMI	GCAATG	4 cut(s)	267, 457, 1044, 1143
BseMII	CTCAG	7 cut(s)	162, 713, 971, 1008, 1539, 1545, 1554
BseXI	GCAGC	8 cut(s)	62, 386, 389, 438, 488, 724, 796, 1051
BsgI	GTGCAG	2 cut(s)	765, 1466
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	464, 1086
BsiHKAI	GWGCWC	3 cut(s)	700, 885, 1502
BsiHKCI	CYCGRG	1 cut(s)	142
BsiSI	CCGG	2 cut(s)	685, 1158
BslFI	GGGAC	2 cut(s)	600, 1064
BslI	CCNNNNNNNGG	1 cut(s)	1157
BsmFI	GGGAC	2 cut(s)	600, 1064
BsmI	GAATGC	1 cut(s)	831
BsnI	GGCC	2 cut(s)	464, 1086
BsoBI	CYCGRG	1 cut(s)	142
Bsp1286I	GDGCHC	3 cut(s)	700, 885, 1502
Bsp143I	GATC	5 cut(s)	204, 343, 625, 927, 1487
Bsp1720I	GCTNAGC	1 cut(s)	980
BspACI	CCGC	4 cut(s)	153, 167, 372, 623
BspANI	GGCC	2 cut(s)	464, 1086
BspCNI	CTCAG	7 cut(s)	163, 712, 972, 1007, 1540, 1544, 1555
BspFNI	CGCG	1 cut(s)	27
BspHI	TCATGA	1 cut(s)	309
BspLI	GGNNCC	1 cut(s)	627
BspMAI	CTGCAG	1 cut(s)	478
BspOI	GCTAGC	1 cut(s)	234
BspPI	GGATC	2 cut(s)	620, 633
BsrDI	GCAATG	4 cut(s)	267, 457, 1044, 1143
BssECI	CCNNGG	1 cut(s)	1081
BssMI	GATC	5 cut(s)	204, 343, 625, 927, 1487
Bst2UI	CCWGG	4 cut(s)	1083, 1103, 1119, 1131
Bst6I	CTCTTC	2 cut(s)	816, 1202
BstAPI	GCANNNNNTGC	2 cut(s)	1145, 1328
BstC8I	GCNNGC	3 cut(s)	232, 369, 431
BstDEI	CTNAG	7 cut(s)	171, 699, 980, 994, 1531, 1548, 1563
BstF5I	GGATG	4 cut(s)	109, 613, 1302, 1443
BstFNI	CGCG	1 cut(s)	27
BstHHI	GCGC	2 cut(s)	27, 382
BstKTI	GATC	5 cut(s)	207, 346, 628, 930, 1490
BstMBI	GATC	5 cut(s)	204, 343, 625, 927, 1487
BstMWI	GCNNNNNNNGC	9 cut(s)	56, 368, 377, 461, 1055, 1064, 1145, 1154, 1328
BstNI	CCWGG	4 cut(s)	1083, 1103, 1119, 1131
BstSCI	CCNGG	6 cut(s)	683, 1081, 1101, 1117, 1129, 1157
BstSFI	CTRYAG	2 cut(s)	474, 1212
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	8 cut(s)	62, 386, 389, 438, 488, 724, 796, 1051
BstV2I	GAAGAC	1 cut(s)	1162
BstX2I	RGATCY	1 cut(s)	625
BstXI	CCANNNNNNTGG	1 cut(s)	1033
BstYI	RGATCY	1 cut(s)	625
BsuI	GTATCC	1 cut(s)	1115
BsuRI	GGCC	2 cut(s)	464, 1086
BtsCI	GGATG	4 cut(s)	109, 613, 1302, 1443
BtsI	GCAGTG	2 cut(s)	663, 777
BtsIMutI	CAGTG	9 cut(s)	663, 777, 904, 1026, 1074, 1331, 1404, 1539, 1560
Cac8I	GCNNGC	3 cut(s)	232, 369, 431
CaiI	CAGNNNCTG	2 cut(s)	715, 1547
CciI	TCATGA	1 cut(s)	309
CfoI	GCGC	2 cut(s)	27, 382
Cfr13I	GGNCC	1 cut(s)	524
Csp6I	GTAC	4 cut(s)	211, 744, 959, 1395
CspCI	CAANNNNNGTGG	2 cut(s)	1012, 1047
CviAII	CATG	5 cut(s)	310, 850, 911, 920, 962
CviQI	GTAC	4 cut(s)	211, 744, 959, 1395
DdeI	CTNAG	7 cut(s)	171, 699, 980, 994, 1531, 1548, 1563
DpnI	GATC	5 cut(s)	206, 345, 627, 929, 1489
DpnII	GATC	5 cut(s)	204, 343, 625, 927, 1487
Eam1104I	CTCTTC	2 cut(s)	816, 1202
EarI	CTCTTC	2 cut(s)	816, 1202
Ecl136II	GAGCTC	2 cut(s)	698, 883
Eco24I	GRGCYC	2 cut(s)	700, 885
Eco47I	GGWCC	1 cut(s)	524
Eco53kI	GAGCTC	2 cut(s)	698, 883
Eco88I	CYCGRG	1 cut(s)	142
EcoICRI	GAGCTC	2 cut(s)	698, 883
EcoO109I	RGGNCCY	1 cut(s)	524
EcoRII	CCWGG	4 cut(s)	1081, 1101, 1117, 1129
EcoT22I	ATGCAT	1 cut(s)	262
EcoT38I	GRGCYC	2 cut(s)	700, 885
FaeI	CATG	5 cut(s)	313, 853, 914, 923, 965
FalI	AAGNNNNNCTT	2 cut(s)	497, 529
FaqI	GGGAC	2 cut(s)	600, 1064
FatI	CATG	5 cut(s)	309, 849, 910, 919, 961
FauNDI	CATATG	1 cut(s)	573
FbaI	TGATCA	2 cut(s)	204, 343
FokI	GGATG	4 cut(s)	116, 620, 1309, 1450
FriOI	GRGCYC	2 cut(s)	700, 885
FspBI	CTAG	4 cut(s)	231, 243, 818, 1503
GlaI	GCGC	2 cut(s)	26, 381
GsuI	CTGGAG	1 cut(s)	1152
HaeIII	GGCC	2 cut(s)	464, 1086
HapII	CCGG	2 cut(s)	685, 1158
HhaI	GCGC	2 cut(s)	27, 382
Hin1II	CATG	5 cut(s)	313, 853, 914, 923, 965
Hin6I	GCGC	2 cut(s)	25, 380
HinP1I	GCGC	2 cut(s)	25, 380
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	3 cut(s)	136, 1184, 1544
HpaII	CCGG	2 cut(s)	685, 1158
HphI	GGTGA	3 cut(s)	158, 205, 773
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	7 cut(s)	702, 997, 1227, 1352, 1485, 1543, 1549
Hpy188III	TCNNGA	4 cut(s)	310, 514, 773, 818
Hpy8I	GTNNAC	1 cut(s)	15
Hpy99I	CGWCG	1 cut(s)	1352
HpyAV	CCTTC	6 cut(s)	190, 295, 307, 547, 639, 682
HpyF10VI	GCNNNNNNNGC	9 cut(s)	56, 368, 377, 461, 1055, 1064, 1145, 1154, 1328
HpyF3I	CTNAG	7 cut(s)	171, 699, 980, 994, 1531, 1548, 1563
Hsp92II	CATG	5 cut(s)	313, 853, 914, 923, 965
HspAI	GCGC	2 cut(s)	25, 380
Ksp22I	TGATCA	2 cut(s)	204, 343
Kzo9I	GATC	5 cut(s)	204, 343, 625, 927, 1487
Lsp1109I	GCAGC	8 cut(s)	62, 386, 389, 438, 488, 724, 796, 1051
LweI	GCATC	5 cut(s)	22, 94, 243, 247, 1485
MaeI	CTAG	4 cut(s)	231, 243, 818, 1503
MaeIII	GTNAC	5 cut(s)	284, 386, 899, 1381, 1506
MalI	GATC	5 cut(s)	206, 345, 627, 929, 1489
MboI	GATC	5 cut(s)	204, 343, 625, 927, 1487
MboII	GAAGA	8 cut(s)	41, 833, 1103, 1162, 1165, 1189, 1585, 1588
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	3 cut(s)	700, 885, 1502
MluCI	AATT	7 cut(s)	64, 403, 531, 732, 1068, 1452, 1590
MlyI	GAGTC	1 cut(s)	1538
MmeI	TCCRAC	2 cut(s)	1330, 1357
MnlI	CCTC	5 cut(s)	286, 907, 1052, 1242, 1450
Mph1103I	ATGCAT	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	768
MseI	TTAA	4 cut(s)	582, 750, 1005, 1569
MslI	CAYNNNNRTG	4 cut(s)	144, 495, 996, 1031
MspA1I	CMGCKG	1 cut(s)	715
MspI	CCGG	2 cut(s)	685, 1158
MspR9I	CCNGG	6 cut(s)	685, 1083, 1103, 1119, 1131, 1159
Mva1269I	GAATGC	1 cut(s)	831
MvaI	CCWGG	4 cut(s)	1083, 1103, 1119, 1131
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	9 cut(s)	56, 368, 377, 461, 1055, 1064, 1145, 1154, 1328
NciI	CCSGG	2 cut(s)	685, 1159
NdeI	CATATG	1 cut(s)	573
NdeII	GATC	5 cut(s)	204, 343, 625, 927, 1487
NheI	GCTAGC	1 cut(s)	230
NlaIII	CATG	5 cut(s)	313, 853, 914, 923, 965
NlaIV	GGNNCC	1 cut(s)	627
NmuCI	GTSAC	4 cut(s)	284, 386, 899, 1506
NsiI	ATGCAT	1 cut(s)	262
OliI	CACNNNNGTG	2 cut(s)	144, 1031
PagI	TCATGA	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	946
PctI	GAATGC	1 cut(s)	831
PdmI	GAANNNNTTC	1 cut(s)	768
PfeI	GAWTC	2 cut(s)	136, 1184
PfoI	TCCNGGA	1 cut(s)	1129
PleI	GAGTC	1 cut(s)	1538
PpsI	GAGTC	1 cut(s)	1538
PpuMI	RGGWCCY	1 cut(s)	524
PsiI	TTATAA	3 cut(s)	726, 1280, 1556
Psp124BI	GAGCTC	2 cut(s)	700, 885
Psp5II	RGGWCCY	1 cut(s)	524
Psp6I	CCWGG	4 cut(s)	1081, 1101, 1117, 1129
PspGI	CCWGG	4 cut(s)	1081, 1101, 1117, 1129
PspN4I	GGNNCC	1 cut(s)	627
PspPI	GGNCC	1 cut(s)	524
PspPPI	RGGWCCY	1 cut(s)	524
PsrI	GAACNNNNNNTAC	4 cut(s)	288, 320, 1206, 1238
PstI	CTGCAG	1 cut(s)	478
PstNI	CAGNNNCTG	2 cut(s)	715, 1547
PsuI	RGATCY	1 cut(s)	625
PvuII	CAGCTG	1 cut(s)	715
RsaI	GTAC	4 cut(s)	212, 745, 960, 1396
RsaNI	GTAC	4 cut(s)	211, 744, 959, 1395
RseI	CAYNNNNRTG	4 cut(s)	144, 495, 996, 1031
SacI	GAGCTC	2 cut(s)	700, 885
SaqAI	TTAA	4 cut(s)	582, 750, 1005, 1569
Sau3AI	GATC	5 cut(s)	204, 343, 625, 927, 1487
Sau96I	GGNCC	1 cut(s)	524
ScaI	AGTACT	1 cut(s)	212
SchI	GAGTC	1 cut(s)	1538
ScrFI	CCNGG	6 cut(s)	685, 1083, 1103, 1119, 1131, 1159
SduI	GDGCHC	3 cut(s)	700, 885, 1502
SfaNI	GCATC	5 cut(s)	22, 94, 243, 247, 1485
SfcI	CTRYAG	2 cut(s)	474, 1212
SinI	GGWCC	1 cut(s)	524
SmiMI	CAYNNNNRTG	4 cut(s)	144, 495, 996, 1031
SmlI	CTYRAG	1 cut(s)	514
SmoI	CTYRAG	1 cut(s)	514
Sse9I	AATT	7 cut(s)	64, 403, 531, 732, 1068, 1452, 1590
SsiI	CCGC	4 cut(s)	153, 167, 372, 623
SspMI	CTAG	4 cut(s)	231, 243, 818, 1503
SstI	GAGCTC	2 cut(s)	700, 885
StyD4I	CCNGG	6 cut(s)	683, 1081, 1101, 1117, 1129, 1157
TaqI	TCGA	1 cut(s)	694
TasI	AATT	7 cut(s)	64, 403, 531, 732, 1068, 1452, 1590
TatI	WGTACW	2 cut(s)	210, 958
TauI	GCSGC	2 cut(s)	170, 374
TfiI	GAWTC	2 cut(s)	136, 1184
Tru1I	TTAA	4 cut(s)	582, 750, 1005, 1569
Tru9I	TTAA	4 cut(s)	582, 750, 1005, 1569
TscAI	CASTG	9 cut(s)	670, 784, 904, 1033, 1081, 1338, 1404, 1539, 1567
TseFI	GTSAC	4 cut(s)	284, 386, 899, 1506
TseI	GCWGC	8 cut(s)	50, 374, 377, 426, 476, 712, 809, 1064
Tsp45I	GTSAC	4 cut(s)	284, 386, 899, 1506
TspDTI	ATGAA	8 cut(s)	132, 143, 326, 458, 866, 1153, 1165, 1189
TspRI	CASTG	9 cut(s)	670, 784, 904, 1033, 1081, 1338, 1404, 1539, 1567
VpaK11BI	GGWCC	1 cut(s)	524
XapI	RAATTY	2 cut(s)	64, 403
XbaI	TCTAGA	1 cut(s)	817
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1030
XmnI	GAANNNNTTC	1 cut(s)	768
XspI	CTAG	4 cut(s)	231, 243, 818, 1503
ZrmI	AGTACT	1 cut(s)	212
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.