Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008256

Physical Location & Seq

Genomic Coordinates Forward (+)

842289 .. 845454

Gene Structure 3166 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G03415.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGACAACTACTGGGTCTAATTCTAATCACAACCACCATGAAAGCAATAATAACAACAATAACCCTAGTACTAGGTCTTGGGGCACGGCGGTTTCAGGTCAATCTGTGTCTACTAGCGGCAGTATGGGCTCTCCGTCGAGCCGGAGTGAGCAAACCATCACCGTTGTTACATCTACTAGCGACACTACTTTTCAACGCCTGAATAATTTGGACATTCAAGGTGATGATGCTGGTTCTCAAGGAGCTTCTGGTGTTAAGAAGAAGAAGAGGGGACAGCGTGCGGCTGGTCCAGATAAGACTGGAAGAGGACTACGTCAATTTAGTATGAAAGTTTGTGAAAAGGTGGAAAGCAAAGGAAGGACAACTTACAATGAGGTTGCAGACGAGCTTGTTGCTGAATTTGCACTTCCAAATAACGATGGAACATCCCCTGATCAGCAACAGTATGATGAGAAAAACATAAGACGAAGAGTATATGATGCTTTAAACGTCCTCATGGCTATGGATATAATATCCAAGGATAAAAAAGAAATTCAATGGAGAGGTCTTCCTCGGACAAGCTTAAGCGACATTGAAGAATTAAAGAACGAACGACTCTCACTTAGGAACAGAATTGAGAAGAAAACTGCATATTCCCAAGAACTGGAAGAACAATATGTAGGCCTTCAGAATCTGATACAGAGAAATGAGCACTTATATAGCTCAGGAAATGCTCCCAGTGGCGGTGTTGCTCTTCCTTTTATCCTTGTCCAGACTCGTCCTCACGCAACAGTAGAAGTGGAGATATCAGAAGATATGCAGCTCGTGCATTTTGATTTCAACAGCACTCCATTTGAGCTCCACGACGACAATTTTGTCCTCAAGACTATGAAGTTTTGTGATCAACCGCCGCAACAACCAAACGGTCGGAACAACAGCCAGCTGGTTTGTCACAATTTCACGCCAGAAAACCCTAACAAAGGCCCCAGCACAGGTCCAACACCGCAGCTGGATATGTACGAGACTCATCTTCAATCGCAACAACATCAGCAGCATTCTCAGCTACAAATCATTCCTATGCCTGAGACTAACAACGTTACTTCCAGCGCTGATACTGCTCCAGTGAAATCCCCGTCTCTTCCAGGGATAATGAACTCCAGCATGAAGCCGGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000278 GO:0000981 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031326 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0046982 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1901576 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04350 map04110 map04350

Pfam Domains

Protein Families

DP E2F_TDP

Protein Analysis

385

Amino Acids

42.75

Weight (kDa)

6.02

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	105 - 176	2.3e-15	E2F/DP family winged-helix DNA-binding domain
DP	PF08781	184 - 289	1.8e-38	Transcription factor DP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03415 AT5G03415
fragaria_vesca	FvH4_7g33950 FvH4_7g33950 FvH4_7g33950
malus_domestica	MD01G1235700.v1.1 MD07G1308600.v1.1
prunus_persica	Prupe.2G325800_v2.0.a1 Prupe.2G325800_v2.0.a1 Prupe.2G325800_v2.0.a1
pyrus_communis	pycom01g24380 pycom07g28080
rosa_chinensis	RchiOBHm_Chr1g0384181
rosa_laevigata	RLG00000026062 RLG00000029262
rosa_multiflora	Rmu_sc0005139.1_g000007
rosa_rugosa	Rorug01G0445500
rosa_samantha	Rh1AG471000 Rh1BG428700 Rh1CG441400 Rh1DG461500
rosa_wichuraiana	Rw1G040150 Rw2G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	854
AccB7I	CCANNNNNTGG	1 cut(s)	643
AccI	GTMKAC	1 cut(s)	110
AciI	CCGC	7 cut(s)	89, 117, 281, 723, 887, 890, 983
AclI	AACGTT	1 cut(s)	1074
AcsI	RAATTY	2 cut(s)	398, 531
AcuI	CTGAAG	1 cut(s)	650
AfaI	GTAC	2 cut(s)	70, 998
AfeI	AGCGCT	1 cut(s)	1087
AfiI	CCNNNNNNNGG	4 cut(s)	643, 722, 959, 971
AflII	CTTAAG	1 cut(s)	562
AgsI	TTSAA	6 cut(s)	194, 218, 536, 575, 820, 1013
AjnI	CCWGG	1 cut(s)	1120
AluBI	AGCT	9 cut(s)	245, 388, 561, 702, 802, 838, 922, 988, 1042
AluI	AGCT	9 cut(s)	245, 388, 561, 702, 802, 838, 922, 988, 1042
Alw21I	GWGCWC	2 cut(s)	693, 840
Alw26I	GTCTC	3 cut(s)	995, 1058, 1119
AlwNI	CAGNNNCTG	1 cut(s)	673
Aor51HI	AGCGCT	1 cut(s)	1087
AoxI	GGCC	2 cut(s)	661, 961
ApeKI	GCWGC	3 cut(s)	799, 985, 1030
ApoI	RAATTY	2 cut(s)	398, 531
ArsI	GACNNNNNNTTYG	2 cut(s)	836, 868
AspLEI	GCGC	1 cut(s)	1088
AspS9I	GGNCC	3 cut(s)	287, 962, 974
AsuHPI	GGTGA	2 cut(s)	151, 233
AvaII	GGWCC	2 cut(s)	287, 974
BaeGI	GKGCMC	1 cut(s)	86
BanII	GRGCYC	2 cut(s)	131, 840
BauI	CACGAG	1 cut(s)	803
BbsI	GAAGAC	1 cut(s)	539
Bbv12I	GWGCWC	2 cut(s)	693, 840
BbvI	GCAGC	3 cut(s)	811, 997, 1042
BccI	CCATC	2 cut(s)	164, 413
BceAI	ACGGC	1 cut(s)	102
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BciT130I	CCWGG	1 cut(s)	1122
BclI	TGATCA	2 cut(s)	433, 880
BcoDI	GTCTC	3 cut(s)	995, 1058, 1119
BfaI	CTAG	4 cut(s)	66, 72, 114, 177
BfoI	RGCGCY	1 cut(s)	1089
BfrI	CTTAAG	1 cut(s)	562
BisI	GCNGC	6 cut(s)	118, 282, 800, 890, 986, 1031
BlsI	GCNGC	6 cut(s)	119, 283, 801, 891, 987, 1032
BmcAI	AGTACT	1 cut(s)	70
Bme1390I	CCNGG	1 cut(s)	1122
Bme18I	GGWCC	2 cut(s)	287, 974
BmgT120I	GGNCC	3 cut(s)	287, 962, 974
BmiI	GGNNCC	1 cut(s)	964
BmrFI	CCNGG	1 cut(s)	1122
BmrI	ACTGGG	2 cut(s)	21, 711
BmsI	GCATC	2 cut(s)	217, 469
BmuI	ACTGGG	2 cut(s)	21, 711
BpiI	GAAGAC	1 cut(s)	539
BpmI	CTGGAG	2 cut(s)	1083, 1120
Bpu10I	CCTNAGC	1 cut(s)	703
BpuEI	CTTGAG	2 cut(s)	222, 845
BsaJI	CCNNGG	3 cut(s)	516, 551, 1121
Bsc4I	CCNNNNNNNGG	4 cut(s)	643, 722, 959, 971
Bse1I	ACTGG	5 cut(s)	16, 304, 648, 717, 1100
BseBI	CCWGG	1 cut(s)	1122
BseDI	CCNNGG	3 cut(s)	516, 551, 1121
BseGI	GGATG	1 cut(s)	425
BseLI	CCNNNNNNNGG	4 cut(s)	643, 722, 959, 971
BseMII	CTCAG	3 cut(s)	717, 1052, 1053
BseNI	ACTGG	5 cut(s)	16, 304, 648, 717, 1100
BseSI	GKGCMC	1 cut(s)	86
BseXI	GCAGC	3 cut(s)	811, 997, 1042
BseYI	CCCAGC	1 cut(s)	965
Bsh1285I	CGRYCG	1 cut(s)	907
BshFI	GGCC	2 cut(s)	663, 963
BsiEI	CGRYCG	1 cut(s)	907
BsiHKAI	GWGCWC	2 cut(s)	693, 840
BsiSI	CCGG	2 cut(s)	142, 1148
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	4 cut(s)	643, 722, 959, 971
BsmAI	GTCTC	3 cut(s)	995, 1058, 1119
BsmBI	CGTCTC	1 cut(s)	1119
BsmFI	GGGAC	1 cut(s)	285
BsmI	GAATGC	1 cut(s)	1033
BsnI	GGCC	2 cut(s)	663, 963
Bsp1286I	GDGCHC	4 cut(s)	86, 131, 693, 840
Bsp143I	GATC	2 cut(s)	433, 880
BspACI	CCGC	7 cut(s)	89, 117, 281, 723, 887, 890, 983
BspANI	GGCC	2 cut(s)	663, 963
BspCNI	CTCAG	3 cut(s)	716, 1051, 1054
BspLI	GGNNCC	1 cut(s)	964
BspQI	GCTCTTC	1 cut(s)	738
BspTI	CTTAAG	1 cut(s)	562
BsrI	ACTGG	5 cut(s)	16, 304, 648, 717, 1100
BssECI	CCNNGG	3 cut(s)	516, 551, 1121
BssMI	GATC	2 cut(s)	433, 880
BssSI	CACGAG	1 cut(s)	803
BssT1I	CCWWGG	1 cut(s)	516
Bst2BI	CACGAG	1 cut(s)	803
Bst2UI	CCWGG	1 cut(s)	1122
Bst4CI	ACNGT	4 cut(s)	163, 444, 772, 905
Bst6I	CTCTTC	5 cut(s)	260, 298, 463, 738, 1122
BstAFI	CTTAAG	1 cut(s)	562
BstAPI	GCANNNNNTGC	1 cut(s)	805
BstC8I	GCNNGC	2 cut(s)	279, 920
BstDEI	CTNAG	4 cut(s)	602, 703, 1038, 1062
BstENI	CCTNNNNNAGG	1 cut(s)	957
BstF5I	GGATG	1 cut(s)	425
BstH2I	RGCGCY	1 cut(s)	1089
BstHHI	GCGC	1 cut(s)	1088
BstKTI	GATC	2 cut(s)	436, 883
BstMAI	GTCTC	3 cut(s)	995, 1058, 1119
BstMBI	GATC	2 cut(s)	433, 880
BstMCI	CGRYCG	1 cut(s)	907
BstMWI	GCNNNNNNNGC	5 cut(s)	126, 401, 805, 1039, 1094
BstNI	CCWGG	1 cut(s)	1122
BstSCI	CCNGG	1 cut(s)	1120
BstSLI	GKGCMC	1 cut(s)	86
BstV1I	GCAGC	3 cut(s)	811, 997, 1042
BstV2I	GAAGAC	1 cut(s)	539
BsuRI	GGCC	2 cut(s)	663, 963
BtsCI	GGATG	1 cut(s)	425
BtsIMutI	CAGTG	2 cut(s)	724, 1107
Cac8I	GCNNGC	2 cut(s)	279, 920
CaiI	CAGNNNCTG	1 cut(s)	673
CfoI	GCGC	1 cut(s)	1088
Cfr13I	GGNCC	3 cut(s)	287, 962, 974
Csp6I	GTAC	2 cut(s)	69, 997
CviAII	CATG	3 cut(s)	38, 496, 1141
CviQI	GTAC	2 cut(s)	69, 997
DdeI	CTNAG	4 cut(s)	602, 703, 1038, 1062
DpnI	GATC	2 cut(s)	435, 882
DpnII	GATC	2 cut(s)	433, 880
DraI	TTTAAA	1 cut(s)	486
DrdI	GACNNNNNNGTC	1 cut(s)	854
DseDI	GACNNNNNNGTC	1 cut(s)	854
Eam1104I	CTCTTC	5 cut(s)	260, 298, 463, 738, 1122
EarI	CTCTTC	5 cut(s)	260, 298, 463, 738, 1122
Ecl136II	GAGCTC	1 cut(s)	838
Eco130I	CCWWGG	1 cut(s)	516
Eco147I	AGGCCT	1 cut(s)	663
Eco24I	GRGCYC	2 cut(s)	131, 840
Eco32I	GATATC	1 cut(s)	786
Eco47I	GGWCC	2 cut(s)	287, 974
Eco47III	AGCGCT	1 cut(s)	1087
Eco53kI	GAGCTC	1 cut(s)	838
Eco57I	CTGAAG	1 cut(s)	650
EcoICRI	GAGCTC	1 cut(s)	838
EcoNI	CCTNNNNNAGG	1 cut(s)	957
EcoO109I	RGGNCCY	1 cut(s)	962
EcoRII	CCWGG	1 cut(s)	1120
EcoRV	GATATC	1 cut(s)	786
EcoT14I	CCWWGG	1 cut(s)	516
EcoT38I	GRGCYC	2 cut(s)	131, 840
ErhI	CCWWGG	1 cut(s)	516
Esp3I	CGTCTC	1 cut(s)	1119
FaeI	CATG	3 cut(s)	41, 499, 1144
FalI	AAGNNNNNCTT	2 cut(s)	349, 381
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	3 cut(s)	37, 495, 1140
FbaI	TGATCA	2 cut(s)	433, 880
FblI	GTMKAC	1 cut(s)	110
Fnu4HI	GCNGC	6 cut(s)	118, 282, 800, 890, 986, 1031
FokI	GGATG	1 cut(s)	412
FriOI	GRGCYC	2 cut(s)	131, 840
Fsp4HI	GCNGC	6 cut(s)	118, 282, 800, 890, 986, 1031
FspBI	CTAG	4 cut(s)	66, 72, 114, 177
GlaI	GCGC	1 cut(s)	1087
GluI	GCNGC	6 cut(s)	118, 282, 800, 890, 986, 1031
GsaI	CCCAGC	1 cut(s)	969
GsuI	CTGGAG	2 cut(s)	1083, 1120
HaeII	RGCGCY	1 cut(s)	1089
HaeIII	GGCC	2 cut(s)	663, 963
HapII	CCGG	2 cut(s)	142, 1148
HhaI	GCGC	1 cut(s)	1088
Hin1II	CATG	3 cut(s)	41, 499, 1144
Hin6I	GCGC	1 cut(s)	1086
HinP1I	GCGC	1 cut(s)	1086
HindIII	AAGCTT	1 cut(s)	559
HinfI	GANTC	4 cut(s)	594, 670, 754, 1003
HpaII	CCGG	2 cut(s)	142, 1148
HphI	GGTGA	2 cut(s)	151, 233
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	5 cut(s)	555, 669, 675, 790, 909
Hpy188III	TCNNGA	4 cut(s)	290, 705, 751, 862
Hpy8I	GTNNAC	1 cut(s)	111
Hpy99I	CGWCG	2 cut(s)	139, 848
HpyAV	CCTTC	2 cut(s)	351, 674
HpyCH4III	ACNGT	4 cut(s)	163, 444, 772, 905
HpyCH4IV	ACGT	3 cut(s)	313, 489, 1074
HpyCH4V	TGCA	5 cut(s)	380, 404, 629, 799, 808
HpyF10VI	GCNNNNNNNGC	5 cut(s)	126, 401, 805, 1039, 1094
HpyF3I	CTNAG	4 cut(s)	602, 703, 1038, 1062
HpySE526I	ACGT	3 cut(s)	313, 489, 1074
Hsp92II	CATG	3 cut(s)	41, 499, 1144
HspAI	GCGC	1 cut(s)	1086
Ksp22I	TGATCA	2 cut(s)	433, 880
Kzo9I	GATC	2 cut(s)	433, 880
LguI	GCTCTTC	1 cut(s)	738
LmnI	GCTCC	4 cut(s)	242, 718, 843, 1102
Lsp1109I	GCAGC	3 cut(s)	811, 997, 1042
LweI	GCATC	2 cut(s)	217, 469
MaeI	CTAG	4 cut(s)	66, 72, 114, 177
MaeII	ACGT	3 cut(s)	313, 489, 1074
MaeIII	GTNAC	3 cut(s)	166, 929, 1075
MalI	GATC	2 cut(s)	435, 882
MboI	GATC	2 cut(s)	433, 880
MhlI	GDGCHC	4 cut(s)	86, 131, 693, 840
MlyI	GAGTC	3 cut(s)	588, 748, 997
MmeI	TCCRAC	2 cut(s)	887, 1001
MnlI	CCTC	8 cut(s)	261, 299, 367, 503, 536, 561, 771, 869
MseI	TTAA	4 cut(s)	255, 485, 563, 581
MslI	CAYNNNNRTG	2 cut(s)	500, 1055
MspA1I	CMGCKG	2 cut(s)	922, 988
MspCI	CTTAAG	1 cut(s)	562
MspI	CCGG	2 cut(s)	142, 1148
MspR9I	CCNGG	1 cut(s)	1122
Mva1269I	GAATGC	1 cut(s)	1033
MvaI	CCWGG	1 cut(s)	1122
MwoI	GCNNNNNNNGC	5 cut(s)	126, 401, 805, 1039, 1094
NdeII	GATC	2 cut(s)	433, 880
NlaIII	CATG	3 cut(s)	41, 499, 1144
NlaIV	GGNNCC	1 cut(s)	964
NmuCI	GTSAC	1 cut(s)	929
PceI	AGGCCT	1 cut(s)	663
PciSI	GCTCTTC	1 cut(s)	738
PctI	GAATGC	1 cut(s)	1033
PfeI	GAWTC	1 cut(s)	670
PflFI	GACNNNGTC	1 cut(s)	312
PflMI	CCANNNNNTGG	1 cut(s)	643
PkrI	GCNGC	6 cut(s)	119, 283, 801, 891, 987, 1032
PleI	GAGTC	3 cut(s)	588, 748, 997
PpsI	GAGTC	3 cut(s)	588, 748, 997
Psp124BI	GAGCTC	1 cut(s)	840
Psp1406I	AACGTT	1 cut(s)	1074
Psp6I	CCWGG	1 cut(s)	1120
PspFI	CCCAGC	1 cut(s)	965
PspGI	CCWGG	1 cut(s)	1120
PspN4I	GGNNCC	1 cut(s)	964
PspPI	GGNCC	3 cut(s)	287, 962, 974
PstNI	CAGNNNCTG	1 cut(s)	673
PsyI	GACNNNGTC	1 cut(s)	312
PvuII	CAGCTG	2 cut(s)	922, 988
RsaI	GTAC	2 cut(s)	70, 998
RsaNI	GTAC	2 cut(s)	69, 997
RseI	CAYNNNNRTG	2 cut(s)	500, 1055
SacI	GAGCTC	1 cut(s)	840
SapI	GCTCTTC	1 cut(s)	738
SaqAI	TTAA	4 cut(s)	255, 485, 563, 581
SatI	GCNGC	6 cut(s)	118, 282, 800, 890, 986, 1031
Sau3AI	GATC	2 cut(s)	433, 880
Sau96I	GGNCC	3 cut(s)	287, 962, 974
ScaI	AGTACT	1 cut(s)	70
SchI	GAGTC	3 cut(s)	588, 748, 997
ScrFI	CCNGG	1 cut(s)	1122
SduI	GDGCHC	4 cut(s)	86, 131, 693, 840
SfaNI	GCATC	2 cut(s)	217, 469
SinI	GGWCC	2 cut(s)	287, 974
SmiMI	CAYNNNNRTG	2 cut(s)	500, 1055
SmlI	CTYRAG	3 cut(s)	237, 562, 860
SmoI	CTYRAG	3 cut(s)	237, 562, 860
SseBI	AGGCCT	1 cut(s)	663
SsiI	CCGC	7 cut(s)	89, 117, 281, 723, 887, 890, 983
SspMI	CTAG	4 cut(s)	66, 72, 114, 177
SstI	GAGCTC	1 cut(s)	840
StuI	AGGCCT	1 cut(s)	663
StyD4I	CCNGG	1 cut(s)	1120
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	4 cut(s)	163, 444, 772, 905
TaiI	ACGT	3 cut(s)	316, 492, 1077
TaqI	TCGA	1 cut(s)	137
TatI	WGTACW	1 cut(s)	68
TauI	GCSGC	3 cut(s)	120, 284, 892
TfiI	GAWTC	1 cut(s)	670
Tru1I	TTAA	4 cut(s)	255, 485, 563, 581
Tru9I	TTAA	4 cut(s)	255, 485, 563, 581
TscAI	CASTG	2 cut(s)	724, 1107
TseFI	GTSAC	1 cut(s)	929
TseI	GCWGC	3 cut(s)	799, 985, 1030
Tsp45I	GTSAC	1 cut(s)	929
TspDTI	ATGAA	5 cut(s)	54, 341, 884, 1145, 1157
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	2 cut(s)	724, 1107
Tth111I	GACNNNGTC	1 cut(s)	312
Van91I	CCANNNNNTGG	1 cut(s)	643
Vha464I	CTTAAG	1 cut(s)	562
VpaK11BI	GGWCC	2 cut(s)	287, 974
XagI	CCTNNNNNAGG	1 cut(s)	957
XapI	RAATTY	2 cut(s)	398, 531
XmiI	GTMKAC	1 cut(s)	110
XspI	CTAG	4 cut(s)	66, 72, 114, 177
ZrmI	AGTACT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.