Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008256

Physical Location & Seq

Genomic Coordinates Reverse (-)

302456 .. 306327

Gene Structure 3872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026062

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGGGACGAGGTCTCAGCAACCAAACCGAGCTGACGACGACGACGACATGCCCGGCAATCAGTCCGTCTCGATGAGCGGCAGTATGGGCTCGCCGTCCAGCCGCAGCGAGCAGACCCCCGCCGGCGACAATTCTTCTCTCCGATTGAATCATCCCGACGTTAACGGCGACGATGCTGGCTCCGTTGGCAAAAAGAAGAAGAGAGGTCAACGGGCTGCAGGAGGCGATAAGAATGGAAGAGGACTGCGCCAATTTAGCATGAAAGTGTGCGAGAAAGTGGAGAGCAAGGGAAGAACCACTTATAATGAGGTTGCAGATGAACTTGTAGCAGAGTTTTCTGACCCTATCAATGGTGTTACATCTCCTGATCAGCAACAATATGATGAGAAGAACATCAGGCGGAGGGTATATGATGCCCTGAATGTTCTAATGGCAATGGATATTATATCCAAGGATAAAAAGGAAATACAATGGAAGGGTCTGCCTCGAACCAGCCTGAATGATATTGAAGAACTGAAGACTGAGCGCCTAGGACTAAGGAGTAGGATTGAAAAGAAAGCTGTCTATCTGCAAGAACTAGAGGAACAATATGTAGGTCTTCAAAACCTGATACAACGAAATGAGCAATTATACTGCTCTGGAGATGCTCCCAGTGGGGGTGTGTCTTTACCTTTCATTCTTGTGCAGACTCGCCCCCATGCAACTGTTGAGGTGGAAATATCAGAGGATATGCAACTGGTGCATTTTGACTTCAATAGCACCCCATTTGAGCTCCATGATGATAACTATGTCTTAAAGGCAATGAAATTCTGTGAAAGGTCGCAGGGTGATGGTAATCATGGTATGACACAAAACTACGTTGCAGATGGAGGAGAAGGGTCTAGCATGGCAGCCATGTATCAACAGCAGATCCCTCCGCAGATCCCTCTTCCTCCAATGGTGAACACACCTGCCAGGCCTCCCACCTCACCACCTCTTCCGGGAATAATAAAAGCACGCGTGAAGCATGAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000278 GO:0000981 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031326 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0046982 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1901576 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04350 map04110 map04350

Pfam Domains

Protein Families

DP E2F_TDP

Protein Analysis

339

Amino Acids

37.5

Weight (kDa)

5.61

Isoelectric Point (pI)

55.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	80 - 160	3e-19	E2F/DP family winged-helix DNA-binding domain
DP	PF08781	168 - 282	6.7e-38	Transcription factor DP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03415 AT5G03415
fragaria_vesca	FvH4_7g33950 FvH4_7g33950 FvH4_7g33950
malus_domestica	MD01G1235700.v1.1 MD07G1308600.v1.1
prunus_persica	Prupe.2G325800_v2.0.a1 Prupe.2G325800_v2.0.a1 Prupe.2G325800_v2.0.a1
pyrus_communis	pycom01g24380 pycom07g28080
rosa_chinensis	RchiOBHm_Chr1g0384181
rosa_laevigata	RLG00000026062 RLG00000029262
rosa_multiflora	Rmu_sc0005139.1_g000007
rosa_rugosa	Rorug01G0445500
rosa_samantha	Rh1AG471000 Rh1BG428700 Rh1CG441400 Rh1DG461500
rosa_wichuraiana	Rw1G040150 Rw2G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
AarI	CACCTGC	1 cut(s)	958
Acc36I	ACCTGC	1 cut(s)	958
AccBSI	CCGCTC	1 cut(s)	78
AccII	CGCG	1 cut(s)	999
AciI	CCGC	5 cut(s)	78, 103, 120, 400, 917
AclWI	GGATC	2 cut(s)	904, 916
AcsI	RAATTY	1 cut(s)	806
AcuI	CTGAAG	1 cut(s)	536
AfiI	CCNNNNNNNGG	3 cut(s)	350, 656, 980
AflIII	ACRYGT	1 cut(s)	997
AgsI	TTSAA	5 cut(s)	148, 509, 551, 602, 754
AjnI	CCWGG	1 cut(s)	953
AluBI	AGCT	3 cut(s)	32, 560, 772
AluI	AGCT	3 cut(s)	32, 560, 772
Alw21I	GWGCWC	1 cut(s)	774
Alw26I	GTCTC	2 cut(s)	18, 73
AlwI	GGATC	2 cut(s)	904, 916
AoxI	GGCC	1 cut(s)	956
ApeKI	GCWGC	3 cut(s)	105, 215, 890
ApoI	RAATTY	1 cut(s)	806
AspA2I	CCTAGG	1 cut(s)	529
AspLEI	GCGC	2 cut(s)	249, 528
AsuC2I	CCSGG	2 cut(s)	54, 981
AsuHPI	GGTGA	3 cut(s)	839, 952, 960
AvrII	CCTAGG	1 cut(s)	529
BanII	GRGCYC	2 cut(s)	92, 774
BbsI	GAAGAC	2 cut(s)	524, 590
Bbv12I	GWGCWC	1 cut(s)	774
BbvI	GCAGC	3 cut(s)	117, 202, 902
BccI	CCATC	2 cut(s)	824, 860
BceAI	ACGGC	2 cut(s)	79, 181
BciT130I	CCWGG	1 cut(s)	955
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	2 cut(s)	54, 981
BcoDI	GTCTC	2 cut(s)	18, 73
BfaI	CTAG	3 cut(s)	530, 578, 882
BfmI	CTRYAG	1 cut(s)	216
BfoI	RGCGCY	1 cut(s)	529
BfuAI	ACCTGC	1 cut(s)	958
BisI	GCNGC	5 cut(s)	79, 103, 106, 216, 891
BlnI	CCTAGG	1 cut(s)	529
BlsI	GCNGC	5 cut(s)	80, 104, 107, 217, 892
Bme1390I	CCNGG	3 cut(s)	54, 955, 981
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	3 cut(s)	54, 955, 981
BmrI	ACTGGG	1 cut(s)	645
BmsI	GCATC	3 cut(s)	163, 403, 634
BmuI	ACTGGG	1 cut(s)	645
BpiI	GAAGAC	2 cut(s)	524, 590
BpmI	CTGGAG	1 cut(s)	660
BpuMI	CCSGG	2 cut(s)	54, 981
BsaBI	GATNNNNATC	1 cut(s)	834
BsaI	GGTCTC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	450, 529
Bsc4I	CCNNNNNNNGG	3 cut(s)	350, 656, 980
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	2 cut(s)	651, 741
Bse3DI	GCAATG	2 cut(s)	441, 807
Bse8I	GATNNNNATC	1 cut(s)	834
BseBI	CCWGG	1 cut(s)	955
BseDI	CCNNGG	2 cut(s)	450, 529
BseGI	GGATG	1 cut(s)	151
BseJI	GATNNNNATC	1 cut(s)	834
BseLI	CCNNNNNNNGG	3 cut(s)	350, 656, 980
BseMI	GCAATG	2 cut(s)	441, 807
BseMII	CTCAG	2 cut(s)	29, 513
BseNI	ACTGG	2 cut(s)	651, 741
BseRI	GAGGAG	1 cut(s)	885
BseXI	GCAGC	3 cut(s)	117, 202, 902
BsgI	GTGCAG	1 cut(s)	704
Bsh1236I	CGCG	1 cut(s)	999
BshFI	GGCC	1 cut(s)	958
BsiHKAI	GWGCWC	1 cut(s)	774
BsiSI	CCGG	3 cut(s)	54, 123, 980
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	3 cut(s)	350, 656, 980
BsmAI	GTCTC	2 cut(s)	18, 73
BsmBI	CGTCTC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	958
Bso31I	GGTCTC	1 cut(s)	18
Bsp1286I	GDGCHC	2 cut(s)	92, 774
Bsp143I	GATC	3 cut(s)	367, 909, 921
BspACI	CCGC	5 cut(s)	78, 103, 120, 400, 917
BspANI	GGCC	1 cut(s)	958
BspCNI	CTCAG	2 cut(s)	28, 514
BspFNI	CGCG	1 cut(s)	999
BspLI	GGNNCC	1 cut(s)	181
BspMAI	CTGCAG	1 cut(s)	220
BspMI	ACCTGC	1 cut(s)	958
BspPI	GGATC	2 cut(s)	904, 916
BspTNI	GGTCTC	1 cut(s)	18
BsrBI	CCGCTC	1 cut(s)	78
BsrDI	GCAATG	2 cut(s)	441, 807
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	2 cut(s)	651, 741
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	450, 529
BssMI	GATC	3 cut(s)	367, 909, 921
BssT1I	CCWWGG	2 cut(s)	450, 529
Bst2UI	CCWGG	1 cut(s)	955
Bst4CI	ACNGT	1 cut(s)	706
Bst6I	CTCTTC	4 cut(s)	194, 232, 933, 981
BstAPI	GCANNNNNTGC	1 cut(s)	739
BstC8I	GCNNGC	5 cut(s)	92, 110, 124, 178, 997
BstDEI	CTNAG	3 cut(s)	15, 522, 536
BstF5I	GGATG	1 cut(s)	151
BstFNI	CGCG	1 cut(s)	999
BstH2I	RGCGCY	1 cut(s)	529
BstHHI	GCGC	2 cut(s)	249, 528
BstKTI	GATC	3 cut(s)	370, 912, 924
BstMAI	GTCTC	2 cut(s)	18, 73
BstMBI	GATC	3 cut(s)	367, 909, 921
BstMWI	GCNNNNNNNGC	4 cut(s)	87, 186, 255, 739
BstNI	CCWGG	1 cut(s)	955
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	3 cut(s)	52, 953, 979
BstSFI	CTRYAG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	999
BstV1I	GCAGC	3 cut(s)	117, 202, 902
BstV2I	GAAGAC	2 cut(s)	524, 590
BstX2I	RGATCY	2 cut(s)	909, 921
BstYI	RGATCY	2 cut(s)	909, 921
BsuRI	GGCC	1 cut(s)	958
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	658
BveI	ACCTGC	1 cut(s)	958
Cac8I	GCNNGC	5 cut(s)	92, 110, 124, 178, 997
CfoI	GCGC	2 cut(s)	249, 528
Cfr10I	RCCGGY	1 cut(s)	122
CviAII	CATG	8 cut(s)	49, 259, 698, 776, 839, 886, 895, 1007
DdeI	CTNAG	3 cut(s)	15, 522, 536
DpnI	GATC	3 cut(s)	369, 911, 923
DpnII	GATC	3 cut(s)	367, 909, 921
Eam1104I	CTCTTC	4 cut(s)	194, 232, 933, 981
EarI	CTCTTC	4 cut(s)	194, 232, 933, 981
EciI	GGCGGA	1 cut(s)	415
Ecl136II	GAGCTC	1 cut(s)	772
Eco130I	CCWWGG	2 cut(s)	450, 529
Eco147I	AGGCCT	1 cut(s)	958
Eco24I	GRGCYC	2 cut(s)	92, 774
Eco31I	GGTCTC	1 cut(s)	18
Eco53kI	GAGCTC	1 cut(s)	772
Eco57I	CTGAAG	1 cut(s)	536
EcoICRI	GAGCTC	1 cut(s)	772
EcoRII	CCWGG	1 cut(s)	953
EcoT14I	CCWWGG	2 cut(s)	450, 529
EcoT38I	GRGCYC	2 cut(s)	92, 774
ErhI	CCWWGG	2 cut(s)	450, 529
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	8 cut(s)	52, 262, 701, 779, 842, 889, 898, 1010
FalI	AAGNNNNNCTT	2 cut(s)	283, 315
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	8 cut(s)	48, 258, 697, 775, 838, 885, 894, 1006
FauI	CCCGC	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	5 cut(s)	79, 103, 106, 216, 891
FokI	GGATG	1 cut(s)	138
FriOI	GRGCYC	2 cut(s)	92, 774
Fsp4HI	GCNGC	5 cut(s)	79, 103, 106, 216, 891
FspBI	CTAG	3 cut(s)	530, 578, 882
GlaI	GCGC	2 cut(s)	248, 527
GluI	GCNGC	5 cut(s)	79, 103, 106, 216, 891
GsuI	CTGGAG	1 cut(s)	660
HaeII	RGCGCY	1 cut(s)	529
HaeIII	GGCC	1 cut(s)	958
HapII	CCGG	3 cut(s)	54, 123, 980
HhaI	GCGC	2 cut(s)	249, 528
Hin1II	CATG	8 cut(s)	52, 262, 701, 779, 842, 889, 898, 1010
Hin6I	GCGC	2 cut(s)	247, 526
HinP1I	GCGC	2 cut(s)	247, 526
HincII	GTYRAC	2 cut(s)	163, 209
HindII	GTYRAC	2 cut(s)	163, 209
HinfI	GANTC	2 cut(s)	148, 688
HpaI	GTTAAC	1 cut(s)	163
HpaII	CCGG	3 cut(s)	54, 123, 980
HphI	GGTGA	3 cut(s)	839, 952, 960
Hpy166II	GTNNAC	3 cut(s)	163, 209, 943
Hpy188I	TCNGA	3 cut(s)	143, 340, 724
Hpy188III	TCNNGA	4 cut(s)	70, 155, 365, 639
Hpy8I	GTNNAC	3 cut(s)	163, 209, 943
Hpy99I	CGWCG	5 cut(s)	41, 44, 47, 161, 173
HpyAV	CCTTC	2 cut(s)	469, 869
HpyCH4III	ACNGT	1 cut(s)	706
HpyCH4IV	ACGT	2 cut(s)	159, 858
HpyCH4V	TGCA	8 cut(s)	218, 314, 571, 685, 701, 733, 742, 863
HpyF10VI	GCNNNNNNNGC	4 cut(s)	87, 186, 255, 739
HpyF3I	CTNAG	3 cut(s)	15, 522, 536
HpySE526I	ACGT	2 cut(s)	159, 858
Hsp92II	CATG	8 cut(s)	52, 262, 701, 779, 842, 889, 898, 1010
HspAI	GCGC	2 cut(s)	247, 526
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	367
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	3 cut(s)	367, 909, 921
LmnI	GCTCC	3 cut(s)	185, 652, 777
Lsp1109I	GCAGC	3 cut(s)	117, 202, 902
LweI	GCATC	3 cut(s)	163, 403, 634
MaeI	CTAG	3 cut(s)	530, 578, 882
MaeII	ACGT	2 cut(s)	159, 858
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	3 cut(s)	369, 911, 923
MbiI	CCGCTC	1 cut(s)	78
MboI	GATC	3 cut(s)	367, 909, 921
MflI	RGATCY	2 cut(s)	909, 921
MhlI	GDGCHC	2 cut(s)	92, 774
MluCI	AATT	4 cut(s)	130, 251, 626, 806
MluI	ACGCGT	1 cut(s)	997
MlyI	GAGTC	1 cut(s)	682
MreI	CGCCGGCG	1 cut(s)	122
MroNI	GCCGGC	1 cut(s)	122
MseI	TTAA	2 cut(s)	162, 794
MslI	CAYNNNNRTG	2 cut(s)	263, 680
MspI	CCGG	3 cut(s)	54, 123, 980
MspR9I	CCNGG	3 cut(s)	54, 955, 981
MvaI	CCWGG	1 cut(s)	955
MvnI	CGCG	1 cut(s)	999
MwoI	GCNNNNNNNGC	4 cut(s)	87, 186, 255, 739
NaeI	GCCGGC	1 cut(s)	124
NciI	CCSGG	2 cut(s)	54, 981
NdeII	GATC	3 cut(s)	367, 909, 921
NgoMIV	GCCGGC	1 cut(s)	122
NlaIII	CATG	8 cut(s)	52, 262, 701, 779, 842, 889, 898, 1010
NlaIV	GGNNCC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	52
PaqCI	CACCTGC	1 cut(s)	958
PceI	AGGCCT	1 cut(s)	958
PcsI	WCGNNNNNNNCGW	2 cut(s)	42, 165
PdiI	GCCGGC	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	148
PflFI	GACNNNGTC	1 cut(s)	10
PfoI	TCCNGGA	1 cut(s)	979
PkrI	GCNGC	5 cut(s)	80, 104, 107, 217, 892
PleI	GAGTC	1 cut(s)	682
PpsI	GAGTC	1 cut(s)	682
PsiI	TTATAA	1 cut(s)	303
Psp124BI	GAGCTC	1 cut(s)	774
Psp6I	CCWGG	1 cut(s)	953
PspGI	CCWGG	1 cut(s)	953
PspN4I	GGNNCC	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	220
PsuI	RGATCY	2 cut(s)	909, 921
PsyI	GACNNNGTC	1 cut(s)	10
RseI	CAYNNNNRTG	2 cut(s)	263, 680
SacI	GAGCTC	1 cut(s)	774
SaqAI	TTAA	2 cut(s)	162, 794
SatI	GCNGC	5 cut(s)	79, 103, 106, 216, 891
Sau3AI	GATC	3 cut(s)	367, 909, 921
SchI	GAGTC	1 cut(s)	682
ScrFI	CCNGG	3 cut(s)	54, 955, 981
SduI	GDGCHC	2 cut(s)	92, 774
SfaNI	GCATC	3 cut(s)	163, 403, 634
SfcI	CTRYAG	1 cut(s)	216
SgrAI	CRCCGGYG	1 cut(s)	122
SmiMI	CAYNNNNRTG	2 cut(s)	263, 680
Sse9I	AATT	4 cut(s)	130, 251, 626, 806
SseBI	AGGCCT	1 cut(s)	958
SsiI	CCGC	5 cut(s)	78, 103, 120, 400, 917
SspMI	CTAG	3 cut(s)	530, 578, 882
SstI	GAGCTC	1 cut(s)	774
StuI	AGGCCT	1 cut(s)	958
StyD4I	CCNGG	3 cut(s)	52, 953, 979
StyI	CCWWGG	2 cut(s)	450, 529
TaaI	ACNGT	1 cut(s)	706
TaiI	ACGT	2 cut(s)	162, 861
TaqI	TCGA	2 cut(s)	71, 487
TasI	AATT	4 cut(s)	130, 251, 626, 806
TauI	GCSGC	2 cut(s)	81, 105
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	2 cut(s)	162, 794
Tru9I	TTAA	2 cut(s)	162, 794
TscAI	CASTG	1 cut(s)	658
TseI	GCWGC	3 cut(s)	105, 215, 890
TspDTI	ATGAA	4 cut(s)	275, 333, 664, 818
TspGWI	ACGGA	2 cut(s)	55, 172
TspRI	CASTG	1 cut(s)	658
Tth111I	GACNNNGTC	1 cut(s)	10
XapI	RAATTY	1 cut(s)	806
XceI	RCATGY	1 cut(s)	52
XmaJI	CCTAGG	1 cut(s)	529
XspI	CTAG	3 cut(s)	530, 578, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.