Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005139.1

Orthogroup ID

OG0008256

Physical Location & Seq

Genomic Coordinates Reverse (-)

17168 .. 21058

Gene Structure 3891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005139.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atggggacgaggtctcagcaaccaaaccgagctgacgacgacgacgacatgcccggcgctcagtccgtctcgatgagcggcagcatgggctcgccgtccagccgcagcgagcagacccccgccggcgacaattcgtctctccgattgaatcatcccgacgttaacggcgacgatgctggctccgttggcaaaaagaagaagagaggtcaacgggctgcaggaggcgataagaatggaagaggactgcgccaatttagcatgaaagtgtgcgagaaagtggagagcaagggaagaaccacttataacgaggttaggtgcaccccatttgagctccatgatgataactatgtcttaaaggcaatgaaattctgtgaaaggtcgcagggtgatggaaatcatggtatgacacaaaactacgttgcagatggaggagaagggtctagcatggcagccatgtatcaacagcagatccctcttcctccgatggtgaacacacctgtcaggcctcccacctcaccacctcttccgggaataataaaagcacgcgtgaagcatgagcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000278 GO:0000981 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031326 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0046982 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1901576 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04350 map04110 map04350

Pfam Domains

Protein Families

DP E2F_TDP

Protein Analysis

187

Amino Acids

20.22

Weight (kDa)

8.77

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03415 AT5G03415
fragaria_vesca	FvH4_7g33950 FvH4_7g33950 FvH4_7g33950
malus_domestica	MD01G1235700.v1.1 MD07G1308600.v1.1
prunus_persica	Prupe.2G325800_v2.0.a1 Prupe.2G325800_v2.0.a1 Prupe.2G325800_v2.0.a1
pyrus_communis	pycom01g24380 pycom07g28080
rosa_chinensis	RchiOBHm_Chr1g0384181
rosa_laevigata	RLG00000026062 RLG00000029262
rosa_multiflora	Rmu_sc0005139.1_g000007
rosa_rugosa	Rorug01G0445500
rosa_samantha	Rh1AG471000 Rh1BG428700 Rh1CG441400 Rh1DG461500
rosa_wichuraiana	Rw1G040150 Rw2G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
AccBSI	CCGCTC	1 cut(s)	78
AccII	CGCG	1 cut(s)	546
AciI	CCGC	3 cut(s)	78, 103, 120
AclWI	GGATC	1 cut(s)	463
AcsI	RAATTY	1 cut(s)	365
AfiI	CCNNNNNNNGG	1 cut(s)	527
AflIII	ACRYGT	1 cut(s)	544
AgsI	TTSAA	1 cut(s)	148
AhdI	GACNNNNNGTC	1 cut(s)	133
AluBI	AGCT	2 cut(s)	32, 331
AluI	AGCT	2 cut(s)	32, 331
Alw21I	GWGCWC	2 cut(s)	320, 333
Alw26I	GTCTC	3 cut(s)	18, 73, 141
Alw44I	GTGCAC	1 cut(s)	316
AlwI	GGATC	1 cut(s)	463
AoxI	GGCC	1 cut(s)	503
ApaLI	GTGCAC	1 cut(s)	316
ApeKI	GCWGC	4 cut(s)	81, 105, 215, 449
ApoI	RAATTY	1 cut(s)	365
AspLEI	GCGC	2 cut(s)	59, 249
AsuC2I	CCSGG	2 cut(s)	54, 528
AsuHPI	GGTGA	3 cut(s)	398, 499, 507
BaeGI	GKGCMC	1 cut(s)	320
BanII	GRGCYC	2 cut(s)	92, 333
Bbv12I	GWGCWC	2 cut(s)	320, 333
BbvI	GCAGC	4 cut(s)	93, 117, 202, 461
BccI	CCATC	3 cut(s)	383, 419, 478
BceAI	ACGGC	2 cut(s)	79, 181
BcnI	CCSGG	2 cut(s)	54, 528
BcoDI	GTCTC	3 cut(s)	18, 73, 141
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	216
BfoI	RGCGCY	1 cut(s)	60
BisI	GCNGC	6 cut(s)	79, 82, 103, 106, 216, 450
BlsI	GCNGC	6 cut(s)	80, 83, 104, 107, 217, 451
Bme1390I	CCNGG	2 cut(s)	54, 528
BmeRI	GACNNNNNGTC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	2 cut(s)	54, 528
BmsI	GCATC	1 cut(s)	163
BpuMI	CCSGG	2 cut(s)	54, 528
BsaBI	GATNNNNATC	1 cut(s)	393
BsaI	GGTCTC	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
Bse118I	RCCGGY	1 cut(s)	122
Bse3DI	GCAATG	1 cut(s)	366
Bse8I	GATNNNNATC	1 cut(s)	393
BseGI	GGATG	1 cut(s)	151
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	2 cut(s)	29, 74
BseRI	GAGGAG	1 cut(s)	444
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	4 cut(s)	93, 117, 202, 461
Bsh1236I	CGCG	1 cut(s)	546
BshFI	GGCC	1 cut(s)	505
BsiHKAI	GWGCWC	2 cut(s)	320, 333
BsiSI	CCGG	3 cut(s)	54, 123, 527
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmAI	GTCTC	3 cut(s)	18, 73, 141
BsmBI	CGTCTC	2 cut(s)	73, 141
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	505
Bso31I	GGTCTC	1 cut(s)	18
Bsp1286I	GDGCHC	3 cut(s)	92, 320, 333
Bsp143I	GATC	1 cut(s)	468
BspACI	CCGC	3 cut(s)	78, 103, 120
BspANI	GGCC	1 cut(s)	505
BspCNI	CTCAG	2 cut(s)	28, 73
BspFNI	CGCG	1 cut(s)	546
BspLI	GGNNCC	1 cut(s)	181
BspMAI	CTGCAG	1 cut(s)	220
BspPI	GGATC	1 cut(s)	463
BspTNI	GGTCTC	1 cut(s)	18
BsrBI	CCGCTC	1 cut(s)	78
BsrDI	GCAATG	1 cut(s)	366
BsrFI	RCCGGY	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	122
BssMI	GATC	1 cut(s)	468
Bst6I	CTCTTC	4 cut(s)	194, 232, 480, 528
BstC8I	GCNNGC	5 cut(s)	92, 110, 124, 178, 544
BstDEI	CTNAG	2 cut(s)	15, 60
BstF5I	GGATG	1 cut(s)	151
BstFNI	CGCG	1 cut(s)	546
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	59, 249
BstKTI	GATC	1 cut(s)	471
BstMAI	GTCTC	3 cut(s)	18, 73, 141
BstMBI	GATC	1 cut(s)	468
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 186, 255
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	2 cut(s)	52, 526
BstSFI	CTRYAG	1 cut(s)	216
BstSLI	GKGCMC	1 cut(s)	320
BstUI	CGCG	1 cut(s)	546
BstV1I	GCAGC	4 cut(s)	93, 117, 202, 461
BstX2I	RGATCY	1 cut(s)	468
BstYI	RGATCY	1 cut(s)	468
BsuRI	GGCC	1 cut(s)	505
BtsCI	GGATG	1 cut(s)	151
Cac8I	GCNNGC	5 cut(s)	92, 110, 124, 178, 544
CfoI	GCGC	2 cut(s)	59, 249
Cfr10I	RCCGGY	1 cut(s)	122
CviAII	CATG	8 cut(s)	49, 85, 259, 335, 398, 445, 454, 554
CviJI	RGCY	8 cut(s)	32, 90, 102, 180, 215, 331, 452, 505
CviKI_1	RGCY	8 cut(s)	32, 90, 102, 180, 215, 331, 452, 505
DdeI	CTNAG	2 cut(s)	15, 60
DpnI	GATC	1 cut(s)	470
DpnII	GATC	1 cut(s)	468
DriI	GACNNNNNGTC	1 cut(s)	133
Eam1104I	CTCTTC	4 cut(s)	194, 232, 480, 528
Eam1105I	GACNNNNNGTC	1 cut(s)	133
EarI	CTCTTC	4 cut(s)	194, 232, 480, 528
Ecl136II	GAGCTC	1 cut(s)	331
Eco147I	AGGCCT	1 cut(s)	505
Eco24I	GRGCYC	2 cut(s)	92, 333
Eco31I	GGTCTC	1 cut(s)	18
Eco53kI	GAGCTC	1 cut(s)	331
EcoICRI	GAGCTC	1 cut(s)	331
EcoT38I	GRGCYC	2 cut(s)	92, 333
Esp3I	CGTCTC	2 cut(s)	73, 141
FaeI	CATG	8 cut(s)	52, 88, 262, 338, 401, 448, 457, 557
FalI	AAGNNNNNCTT	2 cut(s)	283, 315
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	8 cut(s)	48, 84, 258, 334, 397, 444, 453, 553
FauI	CCCGC	1 cut(s)	127
Fnu4HI	GCNGC	6 cut(s)	79, 82, 103, 106, 216, 450
FokI	GGATG	1 cut(s)	138
FriOI	GRGCYC	2 cut(s)	92, 333
Fsp4HI	GCNGC	6 cut(s)	79, 82, 103, 106, 216, 450
FspBI	CTAG	1 cut(s)	441
GlaI	GCGC	2 cut(s)	58, 248
GluI	GCNGC	6 cut(s)	79, 82, 103, 106, 216, 450
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	505
HapII	CCGG	3 cut(s)	54, 123, 527
HhaI	GCGC	2 cut(s)	59, 249
Hin1II	CATG	8 cut(s)	52, 88, 262, 338, 401, 448, 457, 557
Hin6I	GCGC	2 cut(s)	57, 247
HinP1I	GCGC	2 cut(s)	57, 247
HincII	GTYRAC	2 cut(s)	163, 209
HindII	GTYRAC	2 cut(s)	163, 209
HinfI	GANTC	1 cut(s)	148
HpaI	GTTAAC	1 cut(s)	163
HpaII	CCGG	3 cut(s)	54, 123, 527
HphI	GGTGA	3 cut(s)	398, 499, 507
Hpy166II	GTNNAC	4 cut(s)	163, 209, 318, 490
Hpy188I	TCNGA	2 cut(s)	143, 483
Hpy188III	TCNNGA	2 cut(s)	70, 155
Hpy8I	GTNNAC	4 cut(s)	163, 209, 318, 490
Hpy99I	CGWCG	5 cut(s)	41, 44, 47, 161, 173
HpyAV	CCTTC	1 cut(s)	428
HpyCH4IV	ACGT	2 cut(s)	159, 417
HpyCH4V	TGCA	3 cut(s)	218, 318, 422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 186, 255
HpyF3I	CTNAG	2 cut(s)	15, 60
HpySE526I	ACGT	2 cut(s)	159, 417
Hsp92II	CATG	8 cut(s)	52, 88, 262, 338, 401, 448, 457, 557
HspAI	GCGC	2 cut(s)	57, 247
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	468
LmnI	GCTCC	2 cut(s)	185, 336
LpnPI	CCDG	9 cut(s)	67, 112, 136, 162, 204, 368, 487, 510, 540
Lsp1109I	GCAGC	4 cut(s)	93, 117, 202, 461
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	2 cut(s)	159, 417
MalI	GATC	1 cut(s)	470
MbiI	CCGCTC	1 cut(s)	78
MboI	GATC	1 cut(s)	468
MboII	GAAGA	6 cut(s)	208, 211, 249, 303, 467, 515
MflI	RGATCY	1 cut(s)	468
MhlI	GDGCHC	3 cut(s)	92, 320, 333
MluCI	AATT	3 cut(s)	130, 251, 365
MluI	ACGCGT	1 cut(s)	544
MreI	CGCCGGCG	1 cut(s)	122
MroNI	GCCGGC	1 cut(s)	122
MseI	TTAA	2 cut(s)	162, 353
MslI	CAYNNNNRTG	1 cut(s)	263
MspI	CCGG	3 cut(s)	54, 123, 527
MspR9I	CCNGG	2 cut(s)	54, 528
MvnI	CGCG	1 cut(s)	546
MwoI	GCNNNNNNNGC	3 cut(s)	87, 186, 255
NaeI	GCCGGC	1 cut(s)	124
NciI	CCSGG	2 cut(s)	54, 528
NdeII	GATC	1 cut(s)	468
NgoMIV	GCCGGC	1 cut(s)	122
NlaIII	CATG	8 cut(s)	52, 88, 262, 338, 401, 448, 457, 557
NlaIV	GGNNCC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	52
PceI	AGGCCT	1 cut(s)	505
PcsI	WCGNNNNNNNCGW	2 cut(s)	42, 165
PdiI	GCCGGC	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	148
PflFI	GACNNNGTC	1 cut(s)	10
PfoI	TCCNGGA	1 cut(s)	526
PkrI	GCNGC	6 cut(s)	80, 83, 104, 107, 217, 451
PsiI	TTATAA	1 cut(s)	303
Psp124BI	GAGCTC	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	468
PsyI	GACNNNGTC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	263
SacI	GAGCTC	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	162, 353
SatI	GCNGC	6 cut(s)	79, 82, 103, 106, 216, 450
Sau3AI	GATC	1 cut(s)	468
ScrFI	CCNGG	2 cut(s)	54, 528
SduI	GDGCHC	3 cut(s)	92, 320, 333
SfaNI	GCATC	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	216
SgrAI	CRCCGGYG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	3 cut(s)	130, 251, 365
SseBI	AGGCCT	1 cut(s)	505
SsiI	CCGC	3 cut(s)	78, 103, 120
SspMI	CTAG	1 cut(s)	441
SstI	GAGCTC	1 cut(s)	333
StuI	AGGCCT	1 cut(s)	505
StyD4I	CCNGG	2 cut(s)	52, 526
TaiI	ACGT	2 cut(s)	162, 420
TaqI	TCGA	1 cut(s)	71
TasI	AATT	3 cut(s)	130, 251, 365
TauI	GCSGC	2 cut(s)	81, 105
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	2 cut(s)	162, 353
Tru9I	TTAA	2 cut(s)	162, 353
TseI	GCWGC	4 cut(s)	81, 105, 215, 449
TspDTI	ATGAA	2 cut(s)	275, 377
TspGWI	ACGGA	2 cut(s)	55, 172
Tth111I	GACNNNGTC	1 cut(s)	10
VneI	GTGCAC	1 cut(s)	316
XapI	RAATTY	1 cut(s)	365
XceI	RCATGY	1 cut(s)	52
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.