Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008256

Physical Location & Seq

Genomic Coordinates Forward (+)

36423250 .. 36427519

Gene Structure 4270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1308600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGGACAAGGTCCCAGCAGCAACCAGGCCGAGAGCGAACAGGGCAGGACGACGACGACATGGCCGGGGGTCAGTCCGTCTCCATGAGCGGCAGCGTGGGCTCACCCTCCAGCCGCAGCGAGCAGACCATGGCCACGCCCGTCGGCGACAACAGTTTTCTCCGATTGAACCATCCCGACGTTCACGGCGACGACGCTGGCTCCCAAGGCGCCGTTGGTAGCAAGAAGAAGAAGCGAGGTCAACGGGCCGTGGCAGGTGATAAGAATGGAAGAGGACTACGCCAATTCAGCATGAAAGTGTGCGAGAAAGTGGAGAGCAAAGGAAGAACCACTTATAATGAGGTTGCAGATGAACTTGTAGCGGAGTTCGCTGACCCTAGCAATGCTGTTACATCCCCTGATCAGCAACAAGATGATGAGAAGAACATCAGGCGAAGGGTATATGATGCCCTCAATGTTCTTATGGCAATGGATATTATATCTAAAGATAAAAAAGAAATACAATGGAAGGGTTTGCCTCGTACAAGCCTGAATGATATTGAAGAACTGAAGACTGAGCGCATGGGATTGAGAAATAGGATTGAAAAGAAAGCTGCCTATCTACAAGAGCTGGAGGAACAATACGTGGGTCTTCAAAATCTGATACAACGGAATGAGCAATTATACCACTCCGGAGATGCACCCAATGGAGGCGTGGCTTTACCGTTCATTCTTGTGCAGACTCGCCCTCATGCAACTGTTGAGGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGACTTCAATAGCACCCCATTTGAGCTCCATGATGACAACTATGTTTTGAAGGCAATGAAGTTTTGTAATAGGCAGCAGGGTGATGATGCGACACAAAATTTAATTGTAGATGGAGGCGAAGGTTGTAGCATGTCGGGCATGTATCAGCCACAAATCCCTCTTTCTTCAATGCTAAACACAGCAATTAGACCACCACCCATGTCACCACCCCTTCCCGGAATACTGAAAGCACGCGTCAAGCATGAGCACCATGGACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000278 GO:0000981 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031326 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0046982 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1901576 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04350 map04110 map04350

Pfam Domains

Protein Families

DP E2F_TDP

Protein Analysis

347

Amino Acids

38.35

Weight (kDa)

5.78

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	91 - 171	3.1e-19	E2F/DP family winged-helix DNA-binding domain
DP	PF08781	179 - 289	5.6e-40	Transcription factor DP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03415 AT5G03415
fragaria_vesca	FvH4_7g33950 FvH4_7g33950 FvH4_7g33950
malus_domestica	MD01G1235700.v1.1 MD07G1308600.v1.1
prunus_persica	Prupe.2G325800_v2.0.a1 Prupe.2G325800_v2.0.a1 Prupe.2G325800_v2.0.a1
pyrus_communis	pycom01g24380 pycom07g28080
rosa_chinensis	RchiOBHm_Chr1g0384181
rosa_laevigata	RLG00000026062 RLG00000029262
rosa_multiflora	Rmu_sc0005139.1_g000007
rosa_rugosa	Rorug01G0445500
rosa_samantha	Rh1AG471000 Rh1BG428700 Rh1CG441400 Rh1DG461500
rosa_wichuraiana	Rw1G040150 Rw2G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
AarI	CACCTGC	1 cut(s)	245
Acc36I	ACCTGC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	209
AccBSI	CCGCTC	1 cut(s)	90
AccII	CGCG	1 cut(s)	1014
AccIII	TCCGGA	1 cut(s)	671
AciI	CCGC	3 cut(s)	90, 115, 362
AcoI	YGGCCR	2 cut(s)	63, 132
AcsI	RAATTY	1 cut(s)	877
AcuI	CTGAAG	1 cut(s)	569
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	1 cut(s)	523
AfiI	CCNNNNNNNGG	2 cut(s)	689, 995
AflIII	ACRYGT	1 cut(s)	1012
AgsI	TTSAA	7 cut(s)	169, 542, 584, 635, 787, 829, 948
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	4 cut(s)	593, 610, 769, 805
AluI	AGCT	4 cut(s)	593, 610, 769, 805
Alw21I	GWGCWC	2 cut(s)	807, 1029
Alw26I	GTCTC	1 cut(s)	85
Aor13HI	TCCGGA	1 cut(s)	671
AoxI	GGCC	4 cut(s)	28, 63, 132, 246
ApeKI	GCWGC	6 cut(s)	19, 93, 117, 593, 766, 853
ApoI	RAATTY	1 cut(s)	877
AspLEI	GCGC	2 cut(s)	212, 561
AspS9I	GGNCC	2 cut(s)	12, 246
AsuC2I	CCSGG	2 cut(s)	67, 996
AsuHPI	GGTGA	4 cut(s)	96, 269, 872, 975
AvaII	GGWCC	1 cut(s)	12
BalI	TGGCCA	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	209
BanII	GRGCYC	2 cut(s)	104, 807
BbsI	GAAGAC	2 cut(s)	557, 623
Bbv12I	GWGCWC	2 cut(s)	807, 1029
BbvI	GCAGC	6 cut(s)	31, 105, 129, 580, 778, 865
BccI	CCATC	2 cut(s)	180, 884
BceAI	ACGGC	3 cut(s)	197, 202, 233
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	1 cut(s)	400
BcnI	CCSGG	2 cut(s)	67, 996
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	378
BfoI	RGCGCY	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	245
BisI	GCNGC	8 cut(s)	20, 91, 94, 115, 118, 594, 767, 854
BlsI	GCNGC	8 cut(s)	21, 92, 95, 116, 119, 595, 768, 855
Bme1390I	CCNGG	3 cut(s)	27, 67, 996
Bme18I	GGWCC	1 cut(s)	12
BmgT120I	GGNCC	2 cut(s)	12, 246
BmiI	GGNNCC	3 cut(s)	14, 202, 211
BmrFI	CCNGG	3 cut(s)	27, 67, 996
BmsI	GCATC	3 cut(s)	436, 667, 856
BpiI	GAAGAC	2 cut(s)	557, 623
BpmI	CTGGAG	2 cut(s)	94, 632
BpuMI	CCSGG	2 cut(s)	67, 996
BsaAI	YACGTR	1 cut(s)	625
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	5 cut(s)	66, 129, 205, 249, 1030
BsaWI	WCCGGW	1 cut(s)	671
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bsc4I	CCNNNNNNNGG	2 cut(s)	689, 995
Bse3DI	GCAATG	3 cut(s)	388, 474, 840
BseAI	TCCGGA	1 cut(s)	671
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	5 cut(s)	66, 129, 205, 249, 1030
BseGI	GGATG	2 cut(s)	172, 392
BseLI	CCNNNNNNNGG	2 cut(s)	689, 995
BseMI	GCAATG	3 cut(s)	388, 474, 840
BseMII	CTCAG	1 cut(s)	546
BseXI	GCAGC	6 cut(s)	31, 105, 129, 580, 778, 865
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	737
Bsh1236I	CGCG	1 cut(s)	1014
BshFI	GGCC	4 cut(s)	30, 65, 134, 248
BshNI	GGYRCC	1 cut(s)	209
BsiHKAI	GWGCWC	2 cut(s)	807, 1029
BsiSI	CCGG	3 cut(s)	66, 672, 996
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	689, 995
BsmAI	GTCTC	1 cut(s)	85
BsmBI	CGTCTC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	4 cut(s)	30, 65, 134, 248
Bsp1286I	GDGCHC	3 cut(s)	104, 807, 1029
Bsp13I	TCCGGA	1 cut(s)	671
Bsp143I	GATC	1 cut(s)	400
Bsp19I	CCATGG	2 cut(s)	129, 1030
BspACI	CCGC	3 cut(s)	90, 115, 362
BspANI	GGCC	4 cut(s)	30, 65, 134, 248
BspCNI	CTCAG	1 cut(s)	547
BspEI	TCCGGA	1 cut(s)	671
BspFNI	CGCG	1 cut(s)	1014
BspLI	GGNNCC	3 cut(s)	14, 202, 211
BspMI	ACCTGC	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	209
BsrBI	CCGCTC	1 cut(s)	90
BsrDI	GCAATG	3 cut(s)	388, 474, 840
BssECI	CCNNGG	5 cut(s)	66, 129, 205, 249, 1030
BssMI	GATC	1 cut(s)	400
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	3 cut(s)	129, 205, 1030
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	3 cut(s)	155, 705, 739
Bst6I	CTCTTC	1 cut(s)	265
BstACI	GRCGYC	1 cut(s)	210
BstAPI	GCANNNNNTGC	1 cut(s)	772
BstBAI	YACGTR	1 cut(s)	625
BstC8I	GCNNGC	3 cut(s)	122, 199, 1012
BstDEI	CTNAG	1 cut(s)	555
BstDSI	CCRYGG	3 cut(s)	129, 249, 1030
BstF5I	GGATG	2 cut(s)	172, 392
BstFNI	CGCG	1 cut(s)	1014
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	212, 561
BstKTI	GATC	1 cut(s)	403
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	400
BstMWI	GCNNNNNNNGC	7 cut(s)	43, 99, 207, 288, 368, 772, 915
BstNI	CCWGG	1 cut(s)	27
BstNSI	RCATGY	2 cut(s)	913, 922
BstSCI	CCNGG	3 cut(s)	25, 65, 994
BstUI	CGCG	1 cut(s)	1014
BstV1I	GCAGC	6 cut(s)	31, 105, 129, 580, 778, 865
BstV2I	GAAGAC	2 cut(s)	557, 623
BsuRI	GGCC	4 cut(s)	30, 65, 134, 248
BtgI	CCRYGG	3 cut(s)	129, 249, 1030
BtsCI	GGATG	2 cut(s)	172, 392
BveI	ACCTGC	1 cut(s)	245
Cac8I	GCNNGC	3 cut(s)	122, 199, 1012
CfoI	GCGC	2 cut(s)	212, 561
Cfr13I	GGNCC	2 cut(s)	12, 246
CseI	GACGC	2 cut(s)	203, 1003
Csp6I	GTAC	1 cut(s)	522
CviQI	GTAC	1 cut(s)	522
DdeI	CTNAG	1 cut(s)	555
DinI	GGCGCC	1 cut(s)	211
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
EaeI	YGGCCR	2 cut(s)	63, 132
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
Ecl136II	GAGCTC	1 cut(s)	805
Eco130I	CCWWGG	3 cut(s)	129, 205, 1030
Eco24I	GRGCYC	2 cut(s)	104, 807
Eco47I	GGWCC	1 cut(s)	12
Eco53kI	GAGCTC	1 cut(s)	805
Eco57I	CTGAAG	1 cut(s)	569
EcoICRI	GAGCTC	1 cut(s)	805
EcoO109I	RGGNCCY	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	3 cut(s)	129, 205, 1030
EcoT38I	GRGCYC	2 cut(s)	104, 807
EgeI	GGCGCC	1 cut(s)	211
EheI	GGCGCC	1 cut(s)	211
ErhI	CCWWGG	3 cut(s)	129, 205, 1030
Esp3I	CGTCTC	1 cut(s)	85
FalI	AAGNNNNNCTT	2 cut(s)	316, 348
FaqI	GGGAC	1 cut(s)	19
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	8 cut(s)	20, 91, 94, 115, 118, 594, 767, 854
FokI	GGATG	2 cut(s)	159, 379
FriOI	GRGCYC	2 cut(s)	104, 807
Fsp4HI	GCNGC	8 cut(s)	20, 91, 94, 115, 118, 594, 767, 854
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	2 cut(s)	211, 560
GluI	GCNGC	8 cut(s)	20, 91, 94, 115, 118, 594, 767, 854
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	2 cut(s)	94, 632
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	4 cut(s)	30, 65, 134, 248
HapII	CCGG	3 cut(s)	66, 672, 996
HgaI	GACGC	2 cut(s)	203, 1003
HhaI	GCGC	2 cut(s)	212, 561
Hin1I	GRCGYC	1 cut(s)	210
Hin6I	GCGC	2 cut(s)	210, 559
HinP1I	GCGC	2 cut(s)	210, 559
HincII	GTYRAC	1 cut(s)	242
HindII	GTYRAC	1 cut(s)	242
HinfI	GANTC	1 cut(s)	721
HpaII	CCGG	3 cut(s)	66, 672, 996
HphI	GGTGA	4 cut(s)	96, 269, 872, 975
Hpy166II	GTNNAC	2 cut(s)	184, 242
Hpy188I	TCNGA	3 cut(s)	164, 642, 757
Hpy188III	TCNNGA	2 cut(s)	176, 672
Hpy8I	GTNNAC	2 cut(s)	184, 242
Hpy99I	CGWCG	6 cut(s)	56, 59, 146, 182, 194, 197
HpyAV	CCTTC	5 cut(s)	429, 502, 823, 893, 1001
HpyCH4III	ACNGT	3 cut(s)	155, 705, 739
HpyCH4IV	ACGT	2 cut(s)	180, 624
HpyCH4V	TGCA	6 cut(s)	347, 680, 718, 734, 766, 775
HpyF10VI	GCNNNNNNNGC	7 cut(s)	43, 99, 207, 288, 368, 772, 915
HpyF3I	CTNAG	1 cut(s)	555
HpySE526I	ACGT	2 cut(s)	180, 624
Hsp92I	GRCGYC	1 cut(s)	210
HspAI	GCGC	2 cut(s)	210, 559
KasI	GGCGCC	1 cut(s)	209
Kpn2I	TCCGGA	1 cut(s)	671
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	1 cut(s)	400
LmnI	GCTCC	2 cut(s)	206, 810
Lsp1109I	GCAGC	6 cut(s)	31, 105, 129, 580, 778, 865
LweI	GCATC	3 cut(s)	436, 667, 856
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	2 cut(s)	180, 624
MaeIII	GTNAC	2 cut(s)	388, 981
MalI	GATC	1 cut(s)	402
MbiI	CCGCTC	1 cut(s)	90
MboI	GATC	1 cut(s)	400
MhlI	GDGCHC	3 cut(s)	104, 807, 1029
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	5 cut(s)	284, 659, 877, 882, 963
MluI	ACGCGT	1 cut(s)	1012
MluNI	TGGCCA	1 cut(s)	134
Mly113I	GGCGCC	1 cut(s)	210
MlyI	GAGTC	1 cut(s)	715
Mox20I	TGGCCA	1 cut(s)	134
MroI	TCCGGA	1 cut(s)	671
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	1 cut(s)	881
MslI	CAYNNNNRTG	2 cut(s)	296, 713
Msp20I	TGGCCA	1 cut(s)	134
MspI	CCGG	3 cut(s)	66, 672, 996
MspR9I	CCNGG	3 cut(s)	27, 67, 996
MvaI	CCWGG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	1014
MwoI	GCNNNNNNNGC	7 cut(s)	43, 99, 207, 288, 368, 772, 915
NarI	GGCGCC	1 cut(s)	210
NciI	CCSGG	2 cut(s)	67, 996
NcoI	CCATGG	2 cut(s)	129, 1030
NdeII	GATC	1 cut(s)	400
NlaIV	GGNNCC	3 cut(s)	14, 202, 211
NmeAIII	GCCGAG	1 cut(s)	56
NmuCI	GTSAC	1 cut(s)	981
NspI	RCATGY	2 cut(s)	913, 922
PaqCI	CACCTGC	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PflFI	GACNNNGTC	1 cut(s)	10
PfoI	TCCNGGA	1 cut(s)	994
PkrI	GCNGC	8 cut(s)	21, 92, 95, 116, 119, 595, 768, 855
PleI	GAGTC	1 cut(s)	715
PluTI	GGCGCC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	715
Ppu21I	YACGTR	1 cut(s)	625
PpuMI	RGGWCCY	1 cut(s)	12
PsiI	TTATAA	1 cut(s)	336
Psp124BI	GAGCTC	1 cut(s)	807
Psp5II	RGGWCCY	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	3 cut(s)	14, 202, 211
PspPI	GGNCC	2 cut(s)	12, 246
PspPPI	RGGWCCY	1 cut(s)	12
PsyI	GACNNNGTC	1 cut(s)	10
RsaI	GTAC	1 cut(s)	523
RsaNI	GTAC	1 cut(s)	522
RseI	CAYNNNNRTG	2 cut(s)	296, 713
SacI	GAGCTC	1 cut(s)	807
SaqAI	TTAA	1 cut(s)	881
SatI	GCNGC	8 cut(s)	20, 91, 94, 115, 118, 594, 767, 854
Sau3AI	GATC	1 cut(s)	400
Sau96I	GGNCC	2 cut(s)	12, 246
SchI	GAGTC	1 cut(s)	715
ScrFI	CCNGG	3 cut(s)	27, 67, 996
SduI	GDGCHC	3 cut(s)	104, 807, 1029
SfaNI	GCATC	3 cut(s)	436, 667, 856
SfoI	GGCGCC	1 cut(s)	211
SinI	GGWCC	1 cut(s)	12
SmiMI	CAYNNNNRTG	2 cut(s)	296, 713
Sse9I	AATT	5 cut(s)	284, 659, 877, 882, 963
SsiI	CCGC	3 cut(s)	90, 115, 362
SspDI	GGCGCC	1 cut(s)	209
SspMI	CTAG	1 cut(s)	378
SstI	GAGCTC	1 cut(s)	807
StyD4I	CCNGG	3 cut(s)	25, 65, 994
StyI	CCWWGG	3 cut(s)	129, 205, 1030
TaaI	ACNGT	3 cut(s)	155, 705, 739
TaiI	ACGT	2 cut(s)	183, 627
TasI	AATT	5 cut(s)	284, 659, 877, 882, 963
TauI	GCSGC	2 cut(s)	93, 117
Tru1I	TTAA	1 cut(s)	881
Tru9I	TTAA	1 cut(s)	881
TseFI	GTSAC	1 cut(s)	981
TseI	GCWGC	6 cut(s)	19, 93, 117, 593, 766, 853
Tsp45I	GTSAC	1 cut(s)	981
TspDTI	ATGAA	4 cut(s)	308, 366, 697, 851
TspGWI	ACGGA	2 cut(s)	67, 664
Tth111I	GACNNNGTC	1 cut(s)	10
VpaK11BI	GGWCC	1 cut(s)	12
XapI	RAATTY	1 cut(s)	877
XceI	RCATGY	2 cut(s)	913, 922
XcmI	CCANNNNNNNNNTGG	2 cut(s)	212, 691
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.