Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008256

Physical Location & Seq

Genomic Coordinates Forward (+)

21319099 .. 21320822

Gene Structure 1724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g24380.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGGGACAAGGTCCCAGCAGCAACCAGGACGAGAGCGAGTAGGGCAGGAAGACGACGACATGGCCGGGGGTCAGTCCGTGTCGATGAGTGGCAGCGTGGGCTCGCCCTCCAGCCGCAGTGAGCAGACCATGGCCACGCCCGCCGGCGACAACAGTTTTCTTCGATTGAACCATCCCGACGTTCACGGCGATGACGCTGGCTCCCAAGGCGCCGTTGGTAGCAAGAAGAAGAAGCGAGGGCAACGGGCCGTGGCAGGTGATAAGAATGGAAGAGGACTACGCCAATTCAGCATGAAAGTGTGTGAGAAAGTGGAGAGCAAGGGAAGAACCACTTATAATGAGGTTGCAGATGAACTTGTAGCGGAGTTTGCTGACCCTAGCAATGCTGTTACATCCCCTGATCAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000278 GO:0000981 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031326 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0046982 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1901576 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04350 map04110 map04350

Pfam Domains

Protein Families

DP E2F_TDP

Protein Analysis

137

Amino Acids

14.37

Weight (kDa)

6.11

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03415 AT5G03415
fragaria_vesca	FvH4_7g33950 FvH4_7g33950 FvH4_7g33950
malus_domestica	MD01G1235700.v1.1 MD07G1308600.v1.1
prunus_persica	Prupe.2G325800_v2.0.a1 Prupe.2G325800_v2.0.a1 Prupe.2G325800_v2.0.a1
pyrus_communis	pycom01g24380 pycom07g28080
rosa_chinensis	RchiOBHm_Chr1g0384181
rosa_laevigata	RLG00000026062 RLG00000029262
rosa_multiflora	Rmu_sc0005139.1_g000007
rosa_rugosa	Rorug01G0445500
rosa_samantha	Rh1AG471000 Rh1BG428700 Rh1CG441400 Rh1DG461500
rosa_wichuraiana	Rw1G040150 Rw2G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
AarI	CACCTGC	1 cut(s)	245
Acc36I	ACCTGC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	209
AciI	CCGC	3 cut(s)	115, 141, 362
AcoI	YGGCCR	2 cut(s)	63, 132
AcyI	GRCGYC	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	25
AoxI	GGCC	3 cut(s)	63, 132, 246
ApeKI	GCWGC	2 cut(s)	19, 93
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	2 cut(s)	12, 246
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	12
BalI	TGGCCA	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	31, 105
BccI	CCATC	1 cut(s)	180
BceAI	ACGGC	3 cut(s)	197, 202, 233
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	1 cut(s)	400
BcnI	CCSGG	1 cut(s)	67
BfaI	CTAG	1 cut(s)	378
BfoI	RGCGCY	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	245
BisI	GCNGC	3 cut(s)	20, 94, 115
BlsI	GCNGC	3 cut(s)	21, 95, 116
Bme1390I	CCNGG	2 cut(s)	27, 67
Bme18I	GGWCC	1 cut(s)	12
BmgT120I	GGNCC	2 cut(s)	12, 246
BmiI	GGNNCC	3 cut(s)	14, 202, 211
BmrFI	CCNGG	2 cut(s)	27, 67
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	4 cut(s)	66, 129, 205, 249
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse118I	RCCGGY	1 cut(s)	143
Bse3DI	GCAATG	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	4 cut(s)	66, 129, 205, 249
BseGI	GGATG	2 cut(s)	172, 392
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMI	GCAATG	1 cut(s)	388
BseXI	GCAGC	2 cut(s)	31, 105
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	3 cut(s)	65, 134, 248
BshNI	GGYRCC	1 cut(s)	209
BsiSI	CCGG	2 cut(s)	66, 144
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	3 cut(s)	65, 134, 248
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	400
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	3 cut(s)	115, 141, 362
BspANI	GGCC	3 cut(s)	65, 134, 248
BspLI	GGNNCC	3 cut(s)	14, 202, 211
BspMI	ACCTGC	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	388
BsrFI	RCCGGY	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	4 cut(s)	66, 129, 205, 249
BssMI	GATC	1 cut(s)	400
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	2 cut(s)	129, 205
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	265
BstACI	GRCGYC	1 cut(s)	210
BstC8I	GCNNGC	4 cut(s)	104, 141, 145, 199
BstDSI	CCRYGG	2 cut(s)	129, 249
BstF5I	GGATG	2 cut(s)	172, 392
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	1 cut(s)	403
BstMBI	GATC	1 cut(s)	400
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 99, 140, 207, 288, 368
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	2 cut(s)	25, 65
BstV1I	GCAGC	2 cut(s)	31, 105
BstV2I	GAAGAC	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	65, 134, 248
BtgI	CCRYGG	2 cut(s)	129, 249
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	172, 392
BtsI	GCAGTG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	124
BveI	ACCTGC	1 cut(s)	245
Cac8I	GCNNGC	4 cut(s)	104, 141, 145, 199
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	2 cut(s)	12, 246
CseI	GACGC	1 cut(s)	203
CviAII	CATG	3 cut(s)	61, 130, 292
CviJI	RGCY	6 cut(s)	65, 102, 114, 134, 201, 248
CviKI_1	RGCY	6 cut(s)	65, 102, 114, 134, 201, 248
DinI	GGCGCC	1 cut(s)	211
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
EaeI	YGGCCR	2 cut(s)	63, 132
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
Eco130I	CCWWGG	2 cut(s)	129, 205
Eco24I	GRGCYC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	2 cut(s)	129, 205
EcoT38I	GRGCYC	1 cut(s)	104
EgeI	GGCGCC	1 cut(s)	211
EheI	GGCGCC	1 cut(s)	211
ErhI	CCWWGG	2 cut(s)	129, 205
FaeI	CATG	3 cut(s)	64, 133, 295
FaiI	YATR	4 cut(s)	62, 131, 293, 336
FalI	AAGNNNNNCTT	2 cut(s)	316, 348
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	3 cut(s)	60, 129, 291
FauI	CCCGC	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	3 cut(s)	20, 94, 115
FokI	GGATG	2 cut(s)	159, 379
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	3 cut(s)	20, 94, 115
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	3 cut(s)	20, 94, 115
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	94
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	3 cut(s)	65, 134, 248
HapII	CCGG	2 cut(s)	66, 144
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	212
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	3 cut(s)	64, 133, 295
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HpaII	CCGG	2 cut(s)	66, 144
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	2 cut(s)	59, 182
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	1 cut(s)	347
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 99, 140, 207, 288, 368
HpySE526I	ACGT	1 cut(s)	180
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	3 cut(s)	64, 133, 295
HspAI	GCGC	1 cut(s)	210
KasI	GGCGCC	1 cut(s)	209
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	1 cut(s)	400
LmnI	GCTCC	1 cut(s)	206
Lsp1109I	GCAGC	2 cut(s)	31, 105
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	1 cut(s)	402
MboI	GATC	1 cut(s)	400
MboII	GAAGA	6 cut(s)	62, 152, 238, 241, 282, 336
MhlI	GDGCHC	1 cut(s)	104
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	1 cut(s)	284
MluNI	TGGCCA	1 cut(s)	134
Mly113I	GGCGCC	1 cut(s)	210
MnlI	CCTC	4 cut(s)	118, 230, 266, 334
Mox20I	TGGCCA	1 cut(s)	134
MreI	CGCCGGCG	1 cut(s)	143
MroNI	GCCGGC	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	134
MslI	CAYNNNNRTG	2 cut(s)	189, 296
Msp20I	TGGCCA	1 cut(s)	134
MspI	CCGG	2 cut(s)	66, 144
MspR9I	CCNGG	2 cut(s)	27, 67
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	6 cut(s)	43, 99, 140, 207, 288, 368
NaeI	GCCGGC	1 cut(s)	145
NarI	GGCGCC	1 cut(s)	210
NciI	CCSGG	1 cut(s)	67
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	1 cut(s)	400
NgoMIV	GCCGGC	1 cut(s)	143
NlaIII	CATG	3 cut(s)	64, 133, 295
NlaIV	GGNNCC	3 cut(s)	14, 202, 211
PaqCI	CACCTGC	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PdiI	GCCGGC	1 cut(s)	145
PflFI	GACNNNGTC	1 cut(s)	10
PkrI	GCNGC	3 cut(s)	21, 95, 116
PluTI	GGCGCC	1 cut(s)	213
PpuMI	RGGWCCY	1 cut(s)	12
PsiI	TTATAA	1 cut(s)	336
Psp5II	RGGWCCY	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	3 cut(s)	14, 202, 211
PspPI	GGNCC	2 cut(s)	12, 246
PspPPI	RGGWCCY	1 cut(s)	12
PsyI	GACNNNGTC	1 cut(s)	10
RseI	CAYNNNNRTG	2 cut(s)	189, 296
SatI	GCNGC	3 cut(s)	20, 94, 115
Sau3AI	GATC	1 cut(s)	400
Sau96I	GGNCC	2 cut(s)	12, 246
ScrFI	CCNGG	2 cut(s)	27, 67
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	5 cut(s)	14, 183, 259, 345, 408
SfoI	GGCGCC	1 cut(s)	211
SgrAI	CRCCGGYG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	12
SmiMI	CAYNNNNRTG	2 cut(s)	189, 296
Sse9I	AATT	1 cut(s)	284
SsiI	CCGC	3 cut(s)	115, 141, 362
SspDI	GGCGCC	1 cut(s)	209
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	2 cut(s)	25, 65
StyI	CCWWGG	2 cut(s)	129, 205
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	2 cut(s)	83, 163
TasI	AATT	1 cut(s)	284
TauI	GCSGC	1 cut(s)	117
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	2 cut(s)	19, 93
TspDTI	ATGAA	2 cut(s)	308, 366
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	1 cut(s)	124
Tth111I	GACNNNGTC	1 cut(s)	10
VpaK11BI	GGWCC	1 cut(s)	12
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.