FvH4_7g33950

Transcription factor-like protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
24029439 .. 24033112
3674 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g33950.t2

Sequence Viewer

Length: 1080 bp
ATGGGGACCAGGTCTCAGCAACCAAACCCAGCAGCAGCTGACGACGATGACGACATGCGCGGCGGTCAGTCCGTCTCCATGAGCGGCAGCATGGGCTCGCCGTCCAGCCGCAGCGAGCAGACCGCCACACCCGCCGGCGACTCTCTCCGATTGAATCATCCCGACGTTAACGGCGACGATGCCGGCACCGCTGGAAAGAAGAAGAAGAGAGGCCAACGAGCTGCAGGAGGCGATAAGAATGGAAGAGGACTGCGCCAGTTTAGCATGAAAGTTTGCGAGAAAGTGGAGAGCAAGGGAAGAACTACTTATAATGAGGTTGCAGATGAACTTGTAGCAGAGTTTTCGGACCCTATCAATGGTGTTGCATCCCCTGATCAGAATTTGATTTCACAGCAACAATACGATGAGAAGAACATCAGGCGAAGGGTATATGATGCCCTCAATGTTCTAATGGCAATGGATATTATATCCAAGGATAAAAAGGAGATACAATGGAAGGGTCTGCCTCGTACCAGCCTGAATGATATTGAAGAACTGAAGACAGAGCGCTTAGGACTAAGGAGTAGGATTGAAAAGAAAGCTGTCTATCTGCAAGAACTAGAGGAACAGTATGTAGGTCTTCAAAACCTGATACAACGAAATGAGCAATTATACTGCTCTGGAGATGCTCCCAGTGGGGGTGTGTCTTTACCTTTCATTCTTGTGCAGACTCGCCCTCATGCAACTGTTGAGGTGGAAATATCAGAGGATATGCAACTGGTACATTTTGACTTCAATAGCACCCCATTTGAGCTCCATGATGATAACTATGTGTTGAAGGCAATGAAATTCTGTGATAGGCCACAGGCTGATGGTAATCATGGTATGACACAACCTGTTACACCGCAGGCTGATGGTAACCATGGTATGACACAAAACTATGTTGCAGATGGAGGTGAAGGGTCTAGCATGTCAGCCATGTATCAACAGCACATTCCTCCACAGATCCCTCTTCCTCCAATGGTGAACACACCTCTCAGGACTCCCACCTCGCCACCTCTTCCAGGAATAATAAAAGCCCGCGTGAAGCACGAGCACTGA

Protein Analysis

360

Amino Acids

39.58

Weight (kDa)

5.66

Isoelectric Point (pI)

52.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_E2F_TDP PF02319 82 - 162 3.2e-19 E2F/DP family winged-helix DNA-binding domain
DP PF08781 170 - 275 1.8e-37 Transcription factor DP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
AccB1I GGYRCC 1 cut(s) 185
AccBSI CCGCTC 1 cut(s) 84
AccII CGCG 2 cut(s) 60, 1062
AciI CCGC 9 cut(s) 60, 63, 84, 109, 123, 132, 189, 884, 1060
AclWI GGATC 1 cut(s) 979
AcsI RAATTY 2 cut(s) 379, 827
AcuI CTGAAG 1 cut(s) 557
AfaI GTAC 2 cut(s) 511, 762
AfeI AGCGCT 1 cut(s) 548
AfiI CCNNNNNNNGG 3 cut(s) 356, 677, 1043
AgsI TTSAA 6 cut(s) 154, 530, 572, 623, 775, 817
AjnI CCWGG 2 cut(s) 8, 1042
AluBI AGCT 4 cut(s) 38, 221, 581, 793
AluI AGCT 4 cut(s) 38, 221, 581, 793
Alw21I GWGCWC 2 cut(s) 795, 1077
Alw26I GTCTC 2 cut(s) 18, 79
AlwI GGATC 1 cut(s) 979
AlwNI CAGNNNCTG 1 cut(s) 38
Aor51HI AGCGCT 1 cut(s) 548
AoxI GGCC 2 cut(s) 211, 839
ApeKI GCWGC 5 cut(s) 32, 35, 87, 111, 221
ApoI RAATTY 2 cut(s) 379, 827
AspLEI GCGC 3 cut(s) 60, 255, 549
AspS9I GGNCC 2 cut(s) 6, 346
AsuHPI GGTGA 2 cut(s) 947, 1015
AvaII GGWCC 2 cut(s) 6, 346
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 2 cut(s) 98, 795
BauI CACGAG 1 cut(s) 1070
BbsI GAAGAC 2 cut(s) 545, 611
Bbv12I GWGCWC 2 cut(s) 795, 1077
BbvI GCAGC 5 cut(s) 44, 47, 99, 123, 208
BccI CCATC 3 cut(s) 845, 887, 923
BceAI ACGGC 2 cut(s) 85, 187
BcgI CGANNNNNNTGC 2 cut(s) 324, 358
BciT130I CCWGG 2 cut(s) 10, 1044
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 2 cut(s) 18, 79
BfaI CTAG 2 cut(s) 599, 945
BfmI CTRYAG 1 cut(s) 222
BfoI RGCGCY 1 cut(s) 550
BisI GCNGC 8 cut(s) 33, 36, 61, 85, 88, 109, 112, 222
BlsI GCNGC 8 cut(s) 34, 37, 62, 86, 89, 110, 113, 223
Bme1390I CCNGG 2 cut(s) 10, 1044
Bme18I GGWCC 2 cut(s) 6, 346
BmgT120I GGNCC 2 cut(s) 6, 346
BmiI GGNNCC 3 cut(s) 7, 187, 348
BmrFI CCNGG 2 cut(s) 10, 1044
BmrI ACTGGG 1 cut(s) 666
BmsI GCATC 4 cut(s) 169, 374, 424, 655
BmuI ACTGGG 1 cut(s) 666
BpiI GAAGAC 2 cut(s) 545, 611
BpmI CTGGAG 1 cut(s) 681
Bpu10I CCTNAGC 1 cut(s) 550
BsaBI GATNNNNATC 1 cut(s) 855
BsaI GGTCTC 1 cut(s) 18
BsaJI CCNNGG 2 cut(s) 471, 901
Bsc4I CCNNNNNNNGG 3 cut(s) 356, 677, 1043
Bse118I RCCGGY 2 cut(s) 134, 182
Bse1I ACTGG 3 cut(s) 256, 672, 762
Bse3DI GCAATG 2 cut(s) 462, 828
Bse8I GATNNNNATC 1 cut(s) 855
BseBI CCWGG 2 cut(s) 10, 1044
BseDI CCNNGG 2 cut(s) 471, 901
BseGI GGATG 2 cut(s) 157, 365
BseJI GATNNNNATC 1 cut(s) 855
BseLI CCNNNNNNNGG 3 cut(s) 356, 677, 1043
BseMI GCAATG 2 cut(s) 462, 828
BseMII CTCAG 2 cut(s) 29, 1030
BseNI ACTGG 3 cut(s) 256, 672, 762
BseXI GCAGC 5 cut(s) 44, 47, 99, 123, 208
BseYI CCCAGC 1 cut(s) 28
BsgI GTGCAG 1 cut(s) 725
Bsh1236I CGCG 2 cut(s) 60, 1062
BshFI GGCC 2 cut(s) 213, 841
BshNI GGYRCC 1 cut(s) 185
BsiHKAI GWGCWC 2 cut(s) 795, 1077
BsiSI CCGG 2 cut(s) 135, 183
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 3 cut(s) 356, 677, 1043
BsmAI GTCTC 2 cut(s) 18, 79
BsmBI CGTCTC 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 2 cut(s) 213, 841
Bso31I GGTCTC 1 cut(s) 18
Bsp1286I GDGCHC 3 cut(s) 98, 795, 1077
Bsp143I GATC 2 cut(s) 373, 984
Bsp19I CCATGG 1 cut(s) 901
BspACI CCGC 9 cut(s) 60, 63, 84, 109, 123, 132, 189, 884, 1060
BspANI GGCC 2 cut(s) 213, 841
BspCNI CTCAG 2 cut(s) 28, 1029
BspFNI CGCG 2 cut(s) 60, 1062
BspLI GGNNCC 3 cut(s) 7, 187, 348
BspMAI CTGCAG 1 cut(s) 226
BspPI GGATC 1 cut(s) 979
BspT107I GGYRCC 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 18
BsrBI CCGCTC 1 cut(s) 84
BsrDI GCAATG 2 cut(s) 462, 828
BsrFI RCCGGY 2 cut(s) 134, 182
BsrI ACTGG 3 cut(s) 256, 672, 762
BssAI RCCGGY 2 cut(s) 134, 182
BssECI CCNNGG 2 cut(s) 471, 901
BssMI GATC 2 cut(s) 373, 984
BssSI CACGAG 1 cut(s) 1070
BssT1I CCWWGG 2 cut(s) 471, 901
Bst2BI CACGAG 1 cut(s) 1070
Bst2UI CCWGG 2 cut(s) 10, 1044
Bst4CI ACNGT 2 cut(s) 609, 727
Bst6I CTCTTC 4 cut(s) 200, 238, 996, 1044
BstC8I GCNNGC 6 cut(s) 98, 116, 136, 184, 888, 1060
BstDEI CTNAG 4 cut(s) 15, 550, 557, 1016
BstDSI CCRYGG 1 cut(s) 901
BstEII GGTNACC 1 cut(s) 896
BstENI CCTNNNNNAGG 1 cut(s) 1041
BstF5I GGATG 2 cut(s) 157, 365
BstFNI CGCG 2 cut(s) 60, 1062
BstH2I RGCGCY 1 cut(s) 550
BstHHI GCGC 3 cut(s) 60, 255, 549
BstKTI GATC 2 cut(s) 376, 987
BstMAI GTCTC 2 cut(s) 18, 79
BstMBI GATC 2 cut(s) 373, 984
BstMWI GCNNNNNNNGC 4 cut(s) 93, 131, 188, 261
BstNI CCWGG 2 cut(s) 10, 1044
BstNSI RCATGY 2 cut(s) 58, 952
BstPI GGTNACC 1 cut(s) 896
BstSCI CCNGG 2 cut(s) 8, 1042
BstSFI CTRYAG 1 cut(s) 222
BstUI CGCG 2 cut(s) 60, 1062
BstV1I GCAGC 5 cut(s) 44, 47, 99, 123, 208
BstV2I GAAGAC 2 cut(s) 545, 611
BstX2I RGATCY 1 cut(s) 984
BstYI RGATCY 1 cut(s) 984
BsuRI GGCC 2 cut(s) 213, 841
BtgI CCRYGG 1 cut(s) 901
BtsCI GGATG 2 cut(s) 157, 365
BtsIMutI CAGTG 2 cut(s) 679, 1075
Cac8I GCNNGC 6 cut(s) 98, 116, 136, 184, 888, 1060
CaiI CAGNNNCTG 1 cut(s) 38
CfoI GCGC 3 cut(s) 60, 255, 549
Cfr10I RCCGGY 2 cut(s) 134, 182
Cfr13I GGNCC 2 cut(s) 6, 346
CsiI ACCWGGT 1 cut(s) 8
Csp6I GTAC 2 cut(s) 510, 761
CviQI GTAC 2 cut(s) 510, 761
DdeI CTNAG 4 cut(s) 15, 550, 557, 1016
DpnI GATC 2 cut(s) 375, 986
DpnII GATC 2 cut(s) 373, 984
Eam1104I CTCTTC 4 cut(s) 200, 238, 996, 1044
EarI CTCTTC 4 cut(s) 200, 238, 996, 1044
Ecl136II GAGCTC 1 cut(s) 793
Eco130I CCWWGG 2 cut(s) 471, 901
Eco24I GRGCYC 2 cut(s) 98, 795
Eco31I GGTCTC 1 cut(s) 18
Eco47I GGWCC 2 cut(s) 6, 346
Eco47III AGCGCT 1 cut(s) 548
Eco53kI GAGCTC 1 cut(s) 793
Eco57I CTGAAG 1 cut(s) 557
Eco91I GGTNACC 1 cut(s) 896
EcoICRI GAGCTC 1 cut(s) 793
EcoNI CCTNNNNNAGG 1 cut(s) 1041
EcoO65I GGTNACC 1 cut(s) 896
EcoRII CCWGG 2 cut(s) 8, 1042
EcoT14I CCWWGG 2 cut(s) 471, 901
EcoT38I GRGCYC 2 cut(s) 98, 795
ErhI CCWWGG 2 cut(s) 471, 901
Esp3I CGTCTC 1 cut(s) 79
FalI AAGNNNNNCTT 2 cut(s) 289, 321
FaqI GGGAC 1 cut(s) 19
FauI CCCGC 2 cut(s) 139, 1067
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 8 cut(s) 33, 36, 61, 85, 88, 109, 112, 222
FokI GGATG 2 cut(s) 144, 352
FriOI GRGCYC 2 cut(s) 98, 795
Fsp4HI GCNGC 8 cut(s) 33, 36, 61, 85, 88, 109, 112, 222
FspBI CTAG 2 cut(s) 599, 945
GlaI GCGC 3 cut(s) 59, 254, 548
GluI GCNGC 8 cut(s) 33, 36, 61, 85, 88, 109, 112, 222
GsaI CCCAGC 1 cut(s) 32
GsuI CTGGAG 1 cut(s) 681
HaeII RGCGCY 1 cut(s) 550
HaeIII GGCC 2 cut(s) 213, 841
HapII CCGG 2 cut(s) 135, 183
HhaI GCGC 3 cut(s) 60, 255, 549
Hin6I GCGC 3 cut(s) 58, 253, 547
HinP1I GCGC 3 cut(s) 58, 253, 547
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 4 cut(s) 140, 154, 709, 1021
HpaI GTTAAC 1 cut(s) 169
HpaII CCGG 2 cut(s) 135, 183
HphI GGTGA 2 cut(s) 947, 1015
Hpy166II GTNNAC 2 cut(s) 169, 1006
Hpy188I TCNGA 4 cut(s) 149, 346, 378, 745
Hpy188III TCNNGA 3 cut(s) 161, 660, 1018
Hpy8I GTNNAC 2 cut(s) 169, 1006
Hpy99I CGWCG 3 cut(s) 47, 167, 179
HpyAV CCTTC 4 cut(s) 417, 490, 811, 932
HpyCH4III ACNGT 2 cut(s) 609, 727
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 8 cut(s) 224, 320, 365, 592, 706, 722, 754, 926
HpyF10VI GCNNNNNNNGC 4 cut(s) 93, 131, 188, 261
HpyF3I CTNAG 4 cut(s) 15, 550, 557, 1016
HpySE526I ACGT 1 cut(s) 165
HspAI GCGC 3 cut(s) 58, 253, 547
KroI GCCGGC 2 cut(s) 134, 182
KroNI GCCGGC 2 cut(s) 136, 184
Ksp22I TGATCA 1 cut(s) 373
KspAI GTTAAC 1 cut(s) 169
Kzo9I GATC 2 cut(s) 373, 984
LmnI GCTCC 2 cut(s) 673, 798
Lsp1109I GCAGC 5 cut(s) 44, 47, 99, 123, 208
LweI GCATC 4 cut(s) 169, 374, 424, 655
MabI ACCWGGT 1 cut(s) 8
MaeI CTAG 2 cut(s) 599, 945
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 877, 896
MalI GATC 2 cut(s) 375, 986
MbiI CCGCTC 1 cut(s) 84
MboI GATC 2 cut(s) 373, 984
MflI RGATCY 1 cut(s) 984
MhlI GDGCHC 3 cut(s) 98, 795, 1077
MluCI AATT 3 cut(s) 379, 647, 827
MlyI GAGTC 3 cut(s) 134, 703, 1015
MreI CGCCGGCG 1 cut(s) 134
MroNI GCCGGC 2 cut(s) 134, 182
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 1 cut(s) 701
MspA1I CMGCKG 2 cut(s) 38, 191
MspI CCGG 2 cut(s) 135, 183
MspR9I CCNGG 2 cut(s) 10, 1044
MvaI CCWGG 2 cut(s) 10, 1044
MvnI CGCG 2 cut(s) 60, 1062
MwoI GCNNNNNNNGC 4 cut(s) 93, 131, 188, 261
NaeI GCCGGC 2 cut(s) 136, 184
NcoI CCATGG 1 cut(s) 901
NdeII GATC 2 cut(s) 373, 984
NgoMIV GCCGGC 2 cut(s) 134, 182
NlaIV GGNNCC 3 cut(s) 7, 187, 348
NspI RCATGY 2 cut(s) 58, 952
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 171
PdiI GCCGGC 2 cut(s) 136, 184
PfeI GAWTC 1 cut(s) 154
PflFI GACNNNGTC 1 cut(s) 10
PfoI TCCNGGA 1 cut(s) 1042
PkrI GCNGC 8 cut(s) 34, 37, 62, 86, 89, 110, 113, 223
PleI GAGTC 3 cut(s) 134, 703, 1015
PpsI GAGTC 3 cut(s) 134, 703, 1015
PsiI TTATAA 1 cut(s) 309
Psp124BI GAGCTC 1 cut(s) 795
Psp6I CCWGG 2 cut(s) 8, 1042
PspEI GGTNACC 1 cut(s) 896
PspFI CCCAGC 1 cut(s) 28
PspGI CCWGG 2 cut(s) 8, 1042
PspN4I GGNNCC 3 cut(s) 7, 187, 348
PspPI GGNCC 2 cut(s) 6, 346
PstI CTGCAG 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 38
PsuI RGATCY 1 cut(s) 984
PsyI GACNNNGTC 1 cut(s) 10
PvuII CAGCTG 1 cut(s) 38
RsaI GTAC 2 cut(s) 511, 762
RsaNI GTAC 2 cut(s) 510, 761
RseI CAYNNNNRTG 1 cut(s) 701
SacI GAGCTC 1 cut(s) 795
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 8 cut(s) 33, 36, 61, 85, 88, 109, 112, 222
Sau3AI GATC 2 cut(s) 373, 984
Sau96I GGNCC 2 cut(s) 6, 346
SchI GAGTC 3 cut(s) 134, 703, 1015
ScrFI CCNGG 2 cut(s) 10, 1044
SduI GDGCHC 3 cut(s) 98, 795, 1077
SexAI ACCWGGT 1 cut(s) 8
SfaNI GCATC 4 cut(s) 169, 374, 424, 655
SfcI CTRYAG 1 cut(s) 222
SgrAI CRCCGGYG 1 cut(s) 134
SinI GGWCC 2 cut(s) 6, 346
SmiMI CAYNNNNRTG 1 cut(s) 701
Sse9I AATT 3 cut(s) 379, 647, 827
SsiI CCGC 9 cut(s) 60, 63, 84, 109, 123, 132, 189, 884, 1060
SspMI CTAG 2 cut(s) 599, 945
SstI GAGCTC 1 cut(s) 795
StyD4I CCNGG 2 cut(s) 8, 1042
StyI CCWWGG 2 cut(s) 471, 901
TaaI ACNGT 2 cut(s) 609, 727
TaiI ACGT 1 cut(s) 168
TasI AATT 3 cut(s) 379, 647, 827
TauI GCSGC 3 cut(s) 63, 87, 111
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 1 cut(s) 679
TseI GCWGC 5 cut(s) 32, 35, 87, 111, 221
TspDTI ATGAA 4 cut(s) 281, 339, 685, 839
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 1 cut(s) 679
Tth111I GACNNNGTC 1 cut(s) 10
VpaK11BI GGWCC 2 cut(s) 6, 346
XagI CCTNNNNNAGG 1 cut(s) 1041
XapI RAATTY 2 cut(s) 379, 827
XceI RCATGY 2 cut(s) 58, 952
XspI CTAG 2 cut(s) 599, 945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.