Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008256

Physical Location & Seq

Genomic Coordinates Reverse (-)

35612247 .. 35613249

Gene Structure 1003 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029262

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGATGAAGAACGACGACAAATAGAGGATGGGAGATACCCTGAGAAGGCATTGTTGCTAACACGAACACTAGTCAAATTCCTAGATTGTCGAAAGAATGATGATGAAATTGGACCAAAACAAGGAACCAATTTGAAGAAGAAGAGAGGTCAACGGGCTGCAGGAGGCGATAAGAATGGAAGAGGACTGCGCCAATTTAGCATGAAAGTGTGCGAGAAAGTGGAGAGCAAAGGAAGAACCACTTATAATGAGGTTGCAGATGAACTTGTAGCAGAGTTTTCTGACCCTATCAATGGTGTTACATCTCCTGATCAGCAACAATATGATGAGAAGAACATCAGGCGGAGGGTATATGATGCCCTGAATGTTGTAATGGCAATGGATATTATATCCAAGGATAAAAAGGAAATACAATGGAAGGGTCTGCCTCGAACCAGCCTGAATGATATTGAAGAACTGAAGACTGAGCGCCTAGGACTAAGGAGTAGGATTGAAAAGAAAGCTGTCTATCTGCAAGAACTAGAGGAACAATATACTCGCCCCCATGCAACTGTTGAGGTGGAAATATCAGAGGATATGCAACTGGTGCATTTTGACTTCAATAGCACCCCATTTGAGCTCCATGATGATAACTATGTCTTAAAGGCAATGAAATTCTGTGAAAGGTCGCAGGGTGATGGTAATCATGGTATGACACAAAACTACGTTGCAGATGGAGGAGAAGGGTCTAGCAGTATCAACAGCAGATCCCTCTTCCTCCAATGGTCAACACACCTGTCAGGCCTCCCACCTCACCACCTCTTCCGGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000278 GO:0000981 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031326 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0046982 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1901576 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04350 map04110 map04350

Pfam Domains

Protein Families

DP E2F_TDP

Protein Analysis

271

Amino Acids

31.1

Weight (kDa)

6.05

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	61 - 141	3e-18	E2F/DP family winged-helix DNA-binding domain
DP	PF08781	179 - 228	1.8e-14	Transcription factor DP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03415 AT5G03415
fragaria_vesca	FvH4_7g33950 FvH4_7g33950 FvH4_7g33950
malus_domestica	MD01G1235700.v1.1 MD07G1308600.v1.1
prunus_persica	Prupe.2G325800_v2.0.a1 Prupe.2G325800_v2.0.a1 Prupe.2G325800_v2.0.a1
pyrus_communis	pycom01g24380 pycom07g28080
rosa_chinensis	RchiOBHm_Chr1g0384181
rosa_laevigata	RLG00000026062 RLG00000029262
rosa_multiflora	Rmu_sc0005139.1_g000007
rosa_rugosa	Rorug01G0445500
rosa_samantha	Rh1AG471000 Rh1BG428700 Rh1CG441400 Rh1DG461500
rosa_wichuraiana	Rw1G040150 Rw2G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	246
AciI	CCGC	1 cut(s)	343
AclWI	GGATC	1 cut(s)	741
AcsI	RAATTY	2 cut(s)	77, 653
AcuI	CTGAAG	1 cut(s)	479
AfiI	CCNNNNNNNGG	4 cut(s)	46, 122, 293, 805
AgsI	TTSAA	4 cut(s)	136, 452, 494, 601
AhlI	ACTAGT	1 cut(s)	70
AluBI	AGCT	2 cut(s)	503, 619
AluI	AGCT	2 cut(s)	503, 619
Alw21I	GWGCWC	1 cut(s)	621
AlwI	GGATC	1 cut(s)	741
AoxI	GGCC	1 cut(s)	781
ApeKI	GCWGC	1 cut(s)	158
ApoI	RAATTY	2 cut(s)	77, 653
AspA2I	CCTAGG	1 cut(s)	472
AspLEI	GCGC	2 cut(s)	192, 471
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	806
AsuHPI	GGTGA	2 cut(s)	686, 785
AvaII	GGWCC	1 cut(s)	113
AvrII	CCTAGG	1 cut(s)	472
BanII	GRGCYC	1 cut(s)	621
BbsI	GAAGAC	1 cut(s)	467
Bbv12I	GWGCWC	1 cut(s)	621
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	3 cut(s)	23, 671, 707
BclI	TGATCA	1 cut(s)	310
BcnI	CCSGG	1 cut(s)	806
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	5 cut(s)	71, 83, 473, 521, 729
BfmI	CTRYAG	1 cut(s)	159
BfoI	RGCGCY	1 cut(s)	472
BisI	GCNGC	1 cut(s)	159
BlnI	CCTAGG	1 cut(s)	472
BlsI	GCNGC	1 cut(s)	160
Bme1390I	CCNGG	1 cut(s)	806
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	806
BmsI	GCATC	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	467
BpuMI	CCSGG	1 cut(s)	806
BsaBI	GATNNNNATC	1 cut(s)	681
BsaJI	CCNNGG	2 cut(s)	393, 472
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 122, 293, 805
Bse1I	ACTGG	1 cut(s)	588
Bse3DI	GCAATG	2 cut(s)	384, 654
Bse8I	GATNNNNATC	1 cut(s)	681
BseDI	CCNNGG	2 cut(s)	393, 472
BseGI	GGATG	2 cut(s)	10, 34
BseJI	GATNNNNATC	1 cut(s)	681
BseLI	CCNNNNNNNGG	4 cut(s)	46, 122, 293, 805
BseMI	GCAATG	2 cut(s)	384, 654
BseMII	CTCAG	2 cut(s)	33, 456
BseNI	ACTGG	1 cut(s)	588
BseRI	GAGGAG	1 cut(s)	732
BseXI	GCAGC	1 cut(s)	145
BshFI	GGCC	1 cut(s)	783
BsiHKAI	GWGCWC	1 cut(s)	621
BsiSI	CCGG	1 cut(s)	805
BslI	CCNNNNNNNGG	4 cut(s)	46, 122, 293, 805
BsnI	GGCC	1 cut(s)	783
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp143I	GATC	2 cut(s)	310, 746
BspACI	CCGC	1 cut(s)	343
BspANI	GGCC	1 cut(s)	783
BspCNI	CTCAG	2 cut(s)	34, 457
BspLI	GGNNCC	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	163
BspPI	GGATC	1 cut(s)	741
BsrDI	GCAATG	2 cut(s)	384, 654
BsrI	ACTGG	1 cut(s)	588
BssECI	CCNNGG	2 cut(s)	393, 472
BssMI	GATC	2 cut(s)	310, 746
BssT1I	CCWWGG	2 cut(s)	393, 472
Bst4CI	ACNGT	1 cut(s)	553
Bst6I	CTCTTC	4 cut(s)	137, 175, 758, 806
BstAPI	GCANNNNNTGC	1 cut(s)	586
BstDEI	CTNAG	3 cut(s)	42, 465, 479
BstF5I	GGATG	2 cut(s)	10, 34
BstH2I	RGCGCY	1 cut(s)	472
BstHHI	GCGC	2 cut(s)	192, 471
BstKTI	GATC	2 cut(s)	313, 749
BstMBI	GATC	2 cut(s)	310, 746
BstMWI	GCNNNNNNNGC	2 cut(s)	198, 586
BstSCI	CCNGG	1 cut(s)	804
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	145
BstV2I	GAAGAC	1 cut(s)	467
BstX2I	RGATCY	1 cut(s)	746
BstYI	RGATCY	1 cut(s)	746
BsuRI	GGCC	1 cut(s)	783
BtsCI	GGATG	2 cut(s)	10, 34
CfoI	GCGC	2 cut(s)	192, 471
Cfr13I	GGNCC	1 cut(s)	113
CviAII	CATG	4 cut(s)	202, 545, 623, 686
CviJI	RGCY	5 cut(s)	158, 438, 503, 619, 783
CviKI_1	RGCY	5 cut(s)	158, 438, 503, 619, 783
DdeI	CTNAG	3 cut(s)	42, 465, 479
DpnI	GATC	2 cut(s)	312, 748
DpnII	GATC	2 cut(s)	310, 746
Eam1104I	CTCTTC	4 cut(s)	137, 175, 758, 806
EarI	CTCTTC	4 cut(s)	137, 175, 758, 806
EciI	GGCGGA	1 cut(s)	358
Ecl136II	GAGCTC	1 cut(s)	619
Eco130I	CCWWGG	2 cut(s)	393, 472
Eco147I	AGGCCT	1 cut(s)	783
Eco24I	GRGCYC	1 cut(s)	621
Eco47I	GGWCC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	619
Eco57I	CTGAAG	1 cut(s)	479
EcoICRI	GAGCTC	1 cut(s)	619
EcoT14I	CCWWGG	2 cut(s)	393, 472
EcoT38I	GRGCYC	1 cut(s)	621
ErhI	CCWWGG	2 cut(s)	393, 472
FaeI	CATG	4 cut(s)	205, 548, 626, 689
FalI	AAGNNNNNCTT	2 cut(s)	226, 258
FatI	CATG	4 cut(s)	201, 544, 622, 685
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	2 cut(s)	17, 41
FriOI	GRGCYC	1 cut(s)	621
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	5 cut(s)	71, 83, 473, 521, 729
GlaI	GCGC	2 cut(s)	191, 470
GluI	GCNGC	1 cut(s)	159
HaeII	RGCGCY	1 cut(s)	472
HaeIII	GGCC	1 cut(s)	783
HapII	CCGG	1 cut(s)	805
HhaI	GCGC	2 cut(s)	192, 471
Hin1II	CATG	4 cut(s)	205, 548, 626, 689
Hin6I	GCGC	2 cut(s)	190, 469
HinP1I	GCGC	2 cut(s)	190, 469
HincII	GTYRAC	2 cut(s)	152, 768
HindII	GTYRAC	2 cut(s)	152, 768
HpaII	CCGG	1 cut(s)	805
HphI	GGTGA	2 cut(s)	686, 785
Hpy166II	GTNNAC	2 cut(s)	152, 768
Hpy188I	TCNGA	2 cut(s)	283, 571
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	2 cut(s)	152, 768
Hpy99I	CGWCG	1 cut(s)	18
HpyAV	CCTTC	3 cut(s)	40, 412, 716
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4IV	ACGT	1 cut(s)	705
HpyCH4V	TGCA	7 cut(s)	161, 257, 514, 548, 580, 589, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	198, 586
HpyF3I	CTNAG	3 cut(s)	42, 465, 479
HpySE526I	ACGT	1 cut(s)	705
Hsp92II	CATG	4 cut(s)	205, 548, 626, 689
HspAI	GCGC	2 cut(s)	190, 469
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	2 cut(s)	310, 746
LmnI	GCTCC	1 cut(s)	624
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	5 cut(s)	71, 83, 473, 521, 729
MaeII	ACGT	1 cut(s)	705
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	2 cut(s)	312, 748
MboI	GATC	2 cut(s)	310, 746
MflI	RGATCY	1 cut(s)	746
MhlI	GDGCHC	1 cut(s)	621
MluCI	AATT	5 cut(s)	77, 108, 130, 194, 653
MseI	TTAA	1 cut(s)	641
MslI	CAYNNNNRTG	1 cut(s)	206
MspI	CCGG	1 cut(s)	805
MspR9I	CCNGG	1 cut(s)	806
MwoI	GCNNNNNNNGC	2 cut(s)	198, 586
NciI	CCSGG	1 cut(s)	806
NdeII	GATC	2 cut(s)	310, 746
NlaIII	CATG	4 cut(s)	205, 548, 626, 689
NlaIV	GGNNCC	1 cut(s)	127
PceI	AGGCCT	1 cut(s)	783
PfoI	TCCNGGA	1 cut(s)	804
PkrI	GCNGC	1 cut(s)	160
PsiI	TTATAA	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	621
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	746
RseI	CAYNNNNRTG	1 cut(s)	206
SacI	GAGCTC	1 cut(s)	621
SaqAI	TTAA	1 cut(s)	641
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	2 cut(s)	310, 746
Sau96I	GGNCC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	806
SduI	GDGCHC	1 cut(s)	621
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	159
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	206
SpeI	ACTAGT	1 cut(s)	70
Sse9I	AATT	5 cut(s)	77, 108, 130, 194, 653
SseBI	AGGCCT	1 cut(s)	783
SsiI	CCGC	1 cut(s)	343
SspMI	CTAG	5 cut(s)	71, 83, 473, 521, 729
SstI	GAGCTC	1 cut(s)	621
StuI	AGGCCT	1 cut(s)	783
StyD4I	CCNGG	1 cut(s)	804
StyI	CCWWGG	2 cut(s)	393, 472
TaaI	ACNGT	1 cut(s)	553
TaiI	ACGT	1 cut(s)	708
TaqI	TCGA	2 cut(s)	91, 430
TasI	AATT	5 cut(s)	77, 108, 130, 194, 653
Tru1I	TTAA	1 cut(s)	641
Tru9I	TTAA	1 cut(s)	641
TseI	GCWGC	1 cut(s)	158
TspDTI	ATGAA	5 cut(s)	21, 120, 218, 276, 665
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	2 cut(s)	77, 653
XmaJI	CCTAGG	1 cut(s)	472
XspI	CTAG	5 cut(s)	71, 83, 473, 521, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.