MD01G1235700.v1.1

Transcription factor-like protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
32302179 .. 32306348
4170 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1235700.v1.1.491

Sequence Viewer

Length: 1038 bp
ATGGGGACAAGGTCCCAGCAGCAACCAGGACGAGAGCGAGCAGGGCAGGACGACGACGAAATGGCCGGGGGTCAGTCCGTGTCGATGAGCGGCAGCGTGGGCTCACCCTCCAGCCGCAGTGAGCAGACCATGGCCACGCCCGCCGGCGACAACAGTTTTCTTCGATTGAACCATCCCGACGTTCACGGCGATGACGCTGGCTCCCAAGGCGCCGTTGGTAGCAAGAAGAAGAAGCGAGGGCAACGAGCCGTGGCAGGTGATAAGAATGGAAGAGGACTACGCCAATTCAGCATGAAAGTGTGCGAGAAAGTGGAGAGCAAAGGAAGAACCACTTATAATGAGGTTGCAGATGAACTTGTAGCGGAGTTTGCTGACCCTAGCAATGCTGTTACATCCCCCGATCAGCAACAAGATGATGAGAAGAACATCAGGCGAAGGGTATATGATGCCCTGAATGTTCTTATGGCAATGGATATTATATCTAAAGATAAAAAAGAAATACAATGGAAGGGTTTGCCTCGTACAAGCCTGAATGATATTGAAGAACTGAAGACCGAGCGCATGGGATTGAGGAATAGGATCGAAAAGAAATCTGCATATCTGCAAGAGCTGGAGGAACAATACGTAGGTCTTCAAAATCTGATACAACGGAATGAGGAATTATACCACACTGGAGATGCGCCCAGTGGAGGCGTGGCATTACCTTTCATTCTTGTGCAGACTCGCCCTCATGCAACTGTTGAGGTGGAAATATCAGAAGATATGCAGCTGGTGCATTTTGACTTCAATAGCACCCCATTTGAGCTCCATGATGATAATTATGTTTTGAAGGCAATGAATTTTTGTAATAGGCAGCAGAGTGATGATGCGACACAAAACTTAACAGTAGATGGAGGCGAAGGTTGTAGCATGTCAGGGATGTATCAGCCACAGATCCCTCTTGCTTCAATGAACACACCAGTTAGAGCACCGCCCATGTCACCGCCCCGTCCCGGAATACTGAAATCACGTGTCAAGCATGAGCACCATGGACAATAG

Protein Analysis

346

Amino Acids

38.23

Weight (kDa)

5.67

Isoelectric Point (pI)

55.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_E2F_TDP PF02319 91 - 171 3.1e-19 E2F/DP family winged-helix DNA-binding domain
DP PF08781 179 - 292 5.9e-40 Transcription factor DP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 336
AarI CACCTGC 1 cut(s) 245
Acc36I ACCTGC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 209
AccBSI CCGCTC 1 cut(s) 90
AciI CCGC 6 cut(s) 90, 115, 141, 362, 971, 983
AclWI GGATC 2 cut(s) 587, 928
AcoI YGGCCR 2 cut(s) 63, 132
AcsI RAATTY 1 cut(s) 838
AcuI CTGAAG 1 cut(s) 569
AcvI CACGTG 1 cut(s) 1010
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 1 cut(s) 523
AfiI CCNNNNNNNGG 2 cut(s) 689, 992
AflIII ACRYGT 1 cut(s) 1009
AgsI TTSAA 6 cut(s) 169, 542, 635, 787, 829, 948
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 3 cut(s) 610, 769, 805
AluI AGCT 3 cut(s) 610, 769, 805
Alw21I GWGCWC 3 cut(s) 807, 970, 1026
AlwI GGATC 2 cut(s) 587, 928
AoxI GGCC 2 cut(s) 63, 132
ApeKI GCWGC 4 cut(s) 19, 93, 766, 853
ApoI RAATTY 1 cut(s) 838
AspLEI GCGC 3 cut(s) 212, 561, 682
AspS9I GGNCC 1 cut(s) 12
AsuC2I CCSGG 2 cut(s) 67, 993
AsuHPI GGTGA 3 cut(s) 96, 269, 972
AvaII GGWCC 1 cut(s) 12
BalI TGGCCA 1 cut(s) 134
BanI GGYRCC 1 cut(s) 209
BanII GRGCYC 2 cut(s) 104, 807
BbrPI CACGTG 1 cut(s) 1010
BbsI GAAGAC 2 cut(s) 557, 623
Bbv12I GWGCWC 3 cut(s) 807, 970, 1026
BbvI GCAGC 4 cut(s) 31, 105, 778, 865
BccI CCATC 2 cut(s) 180, 884
BceAI ACGGC 3 cut(s) 197, 202, 233
BciT130I CCWGG 1 cut(s) 27
BcnI CCSGG 2 cut(s) 67, 993
BfaI CTAG 1 cut(s) 378
BfoI RGCGCY 1 cut(s) 213
BfuAI ACCTGC 1 cut(s) 245
BisI GCNGC 6 cut(s) 20, 91, 94, 115, 767, 854
BlsI GCNGC 6 cut(s) 21, 92, 95, 116, 768, 855
Bme1390I CCNGG 3 cut(s) 27, 67, 993
Bme18I GGWCC 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 3 cut(s) 14, 202, 211
BmrFI CCNGG 3 cut(s) 27, 67, 993
BmrI ACTGGG 1 cut(s) 678
BmsI GCATC 3 cut(s) 436, 667, 856
BmuI ACTGGG 1 cut(s) 678
BpiI GAAGAC 2 cut(s) 557, 623
BpmI CTGGAG 3 cut(s) 94, 632, 693
BpuMI CCSGG 2 cut(s) 67, 993
BsaAI YACGTR 2 cut(s) 625, 1010
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 5 cut(s) 66, 129, 205, 249, 1027
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 2 cut(s) 689, 992
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 3 cut(s) 676, 684, 959
Bse3DI GCAATG 3 cut(s) 388, 474, 840
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 5 cut(s) 66, 129, 205, 249, 1027
BseGI GGATG 3 cut(s) 172, 392, 924
BseLI CCNNNNNNNGG 2 cut(s) 689, 992
BseMI GCAATG 3 cut(s) 388, 474, 840
BseNI ACTGG 3 cut(s) 676, 684, 959
BseXI GCAGC 4 cut(s) 31, 105, 778, 865
BseYI CCCAGC 1 cut(s) 15
BsgI GTGCAG 1 cut(s) 737
BshFI GGCC 2 cut(s) 65, 134
BshNI GGYRCC 1 cut(s) 209
BsiHKAI GWGCWC 3 cut(s) 807, 970, 1026
BsiSI CCGG 3 cut(s) 66, 144, 993
BslFI GGGAC 2 cut(s) 19, 975
BslI CCNNNNNNNGG 2 cut(s) 689, 992
BsmFI GGGAC 2 cut(s) 19, 975
BsnI GGCC 2 cut(s) 65, 134
Bsp1286I GDGCHC 4 cut(s) 104, 807, 970, 1026
Bsp143I GATC 3 cut(s) 400, 579, 933
Bsp19I CCATGG 2 cut(s) 129, 1027
BspACI CCGC 6 cut(s) 90, 115, 141, 362, 971, 983
BspANI GGCC 2 cut(s) 65, 134
BspLI GGNNCC 3 cut(s) 14, 202, 211
BspMI ACCTGC 1 cut(s) 245
BspPI GGATC 2 cut(s) 587, 928
BspT107I GGYRCC 1 cut(s) 209
BsrBI CCGCTC 1 cut(s) 90
BsrDI GCAATG 3 cut(s) 388, 474, 840
BsrFI RCCGGY 1 cut(s) 143
BsrI ACTGG 3 cut(s) 676, 684, 959
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 5 cut(s) 66, 129, 205, 249, 1027
BssMI GATC 3 cut(s) 400, 579, 933
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 3 cut(s) 129, 205, 1027
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 3 cut(s) 155, 739, 886
Bst6I CTCTTC 1 cut(s) 265
BstACI GRCGYC 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 772
BstBAI YACGTR 2 cut(s) 625, 1010
BstC8I GCNNGC 4 cut(s) 39, 141, 145, 199
BstDSI CCRYGG 3 cut(s) 129, 249, 1027
BstF5I GGATG 3 cut(s) 172, 392, 924
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 3 cut(s) 212, 561, 682
BstKTI GATC 3 cut(s) 403, 582, 936
BstMBI GATC 3 cut(s) 400, 579, 933
BstMWI GCNNNNNNNGC 7 cut(s) 43, 99, 140, 207, 288, 368, 772
BstNI CCWGG 1 cut(s) 27
BstNSI RCATGY 1 cut(s) 913
BstSCI CCNGG 3 cut(s) 25, 65, 991
BstSNI TACGTA 1 cut(s) 625
BstV1I GCAGC 4 cut(s) 31, 105, 778, 865
BstV2I GAAGAC 2 cut(s) 557, 623
BstX2I RGATCY 1 cut(s) 933
BstYI RGATCY 1 cut(s) 933
BsuRI GGCC 2 cut(s) 65, 134
BtgI CCRYGG 3 cut(s) 129, 249, 1027
BtgZI GCGATG 1 cut(s) 204
BtsCI GGATG 3 cut(s) 172, 392, 924
BtsI GCAGTG 1 cut(s) 124
BtsIMutI CAGTG 3 cut(s) 124, 669, 691
BveI ACCTGC 1 cut(s) 245
Cac8I GCNNGC 4 cut(s) 39, 141, 145, 199
CfoI GCGC 3 cut(s) 212, 561, 682
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 12
CseI GACGC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 522
CviAII CATG 9 cut(s) 130, 292, 562, 731, 809, 910, 976, 1019, 1028
CviQI GTAC 1 cut(s) 522
DinI GGCGCC 1 cut(s) 211
DpnI GATC 3 cut(s) 402, 581, 935
DpnII GATC 3 cut(s) 400, 579, 933
EaeI YGGCCR 2 cut(s) 63, 132
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
Ecl136II GAGCTC 1 cut(s) 805
Eco105I TACGTA 1 cut(s) 625
Eco130I CCWWGG 3 cut(s) 129, 205, 1027
Eco24I GRGCYC 2 cut(s) 104, 807
Eco47I GGWCC 1 cut(s) 12
Eco53kI GAGCTC 1 cut(s) 805
Eco57I CTGAAG 1 cut(s) 569
Eco72I CACGTG 1 cut(s) 1010
EcoICRI GAGCTC 1 cut(s) 805
EcoO109I RGGNCCY 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 25
EcoT14I CCWWGG 3 cut(s) 129, 205, 1027
EcoT38I GRGCYC 2 cut(s) 104, 807
EgeI GGCGCC 1 cut(s) 211
EheI GGCGCC 1 cut(s) 211
ErhI CCWWGG 3 cut(s) 129, 205, 1027
FaeI CATG 9 cut(s) 133, 295, 565, 734, 812, 913, 979, 1022, 1031
FalI AAGNNNNNCTT 2 cut(s) 316, 348
FaqI GGGAC 2 cut(s) 19, 975
FatI CATG 9 cut(s) 129, 291, 561, 730, 808, 909, 975, 1018, 1027
FauI CCCGC 1 cut(s) 148
Fnu4HI GCNGC 6 cut(s) 20, 91, 94, 115, 767, 854
FokI GGATG 3 cut(s) 159, 379, 931
FriOI GRGCYC 2 cut(s) 104, 807
Fsp4HI GCNGC 6 cut(s) 20, 91, 94, 115, 767, 854
FspBI CTAG 1 cut(s) 378
GlaI GCGC 3 cut(s) 211, 560, 681
GluI GCNGC 6 cut(s) 20, 91, 94, 115, 767, 854
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 3 cut(s) 94, 632, 693
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 2 cut(s) 65, 134
HapII CCGG 3 cut(s) 66, 144, 993
HgaI GACGC 1 cut(s) 203
HhaI GCGC 3 cut(s) 212, 561, 682
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 9 cut(s) 133, 295, 565, 734, 812, 913, 979, 1022, 1031
Hin6I GCGC 3 cut(s) 210, 559, 680
HinP1I GCGC 3 cut(s) 210, 559, 680
HinfI GANTC 1 cut(s) 721
HpaII CCGG 3 cut(s) 66, 144, 993
HphI GGTGA 3 cut(s) 96, 269, 972
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 642, 757
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 3 cut(s) 56, 59, 182
HpyAV CCTTC 4 cut(s) 429, 502, 823, 893
HpyCH4III ACNGT 3 cut(s) 155, 739, 886
HpyCH4IV ACGT 3 cut(s) 180, 624, 1009
HpyCH4V TGCA 7 cut(s) 347, 596, 604, 718, 734, 766, 775
HpyF10VI GCNNNNNNNGC 7 cut(s) 43, 99, 140, 207, 288, 368, 772
HpySE526I ACGT 3 cut(s) 180, 624, 1009
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 9 cut(s) 133, 295, 565, 734, 812, 913, 979, 1022, 1031
HspAI GCGC 3 cut(s) 210, 559, 680
KasI GGCGCC 1 cut(s) 209
KroI GCCGGC 1 cut(s) 143
KroNI GCCGGC 1 cut(s) 145
Kzo9I GATC 3 cut(s) 400, 579, 933
LmnI GCTCC 2 cut(s) 206, 810
Lsp1109I GCAGC 4 cut(s) 31, 105, 778, 865
LweI GCATC 3 cut(s) 436, 667, 856
MaeI CTAG 1 cut(s) 378
MaeII ACGT 3 cut(s) 180, 624, 1009
MaeIII GTNAC 2 cut(s) 388, 978
MalI GATC 3 cut(s) 402, 581, 935
MbiI CCGCTC 1 cut(s) 90
MboI GATC 3 cut(s) 400, 579, 933
MflI RGATCY 1 cut(s) 933
MhlI GDGCHC 4 cut(s) 104, 807, 970, 1026
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 4 cut(s) 284, 659, 817, 838
MluNI TGGCCA 1 cut(s) 134
Mly113I GGCGCC 1 cut(s) 210
MlyI GAGTC 1 cut(s) 715
Mox20I TGGCCA 1 cut(s) 134
MreI CGCCGGCG 1 cut(s) 143
MroNI GCCGGC 1 cut(s) 143
MscI TGGCCA 1 cut(s) 134
MseI TTAA 1 cut(s) 881
MslI CAYNNNNRTG 3 cut(s) 189, 296, 713
Msp20I TGGCCA 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 769
MspI CCGG 3 cut(s) 66, 144, 993
MspR9I CCNGG 3 cut(s) 27, 67, 993
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 7 cut(s) 43, 99, 140, 207, 288, 368, 772
NaeI GCCGGC 1 cut(s) 145
NarI GGCGCC 1 cut(s) 210
NciI CCSGG 2 cut(s) 67, 993
NcoI CCATGG 2 cut(s) 129, 1027
NdeII GATC 3 cut(s) 400, 579, 933
NgoMIV GCCGGC 1 cut(s) 143
NlaIII CATG 9 cut(s) 133, 295, 565, 734, 812, 913, 979, 1022, 1031
NlaIV GGNNCC 3 cut(s) 14, 202, 211
NmuCI GTSAC 1 cut(s) 978
NspI RCATGY 1 cut(s) 913
PaqCI CACCTGC 1 cut(s) 245
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PdiI GCCGGC 1 cut(s) 145
PflFI GACNNNGTC 1 cut(s) 10
PfoI TCCNGGA 1 cut(s) 991
PkrI GCNGC 6 cut(s) 21, 92, 95, 116, 768, 855
PleI GAGTC 1 cut(s) 715
PluTI GGCGCC 1 cut(s) 213
PmaCI CACGTG 1 cut(s) 1010
PmlI CACGTG 1 cut(s) 1010
PpsI GAGTC 1 cut(s) 715
Ppu21I YACGTR 2 cut(s) 625, 1010
PpuMI RGGWCCY 1 cut(s) 12
PsiI TTATAA 1 cut(s) 336
Psp124BI GAGCTC 1 cut(s) 807
Psp5II RGGWCCY 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 25
PspCI CACGTG 1 cut(s) 1010
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 3 cut(s) 14, 202, 211
PspPI GGNCC 1 cut(s) 12
PspPPI RGGWCCY 1 cut(s) 12
PsuI RGATCY 1 cut(s) 933
PsyI GACNNNGTC 1 cut(s) 10
PvuII CAGCTG 1 cut(s) 769
RsaI GTAC 1 cut(s) 523
RsaNI GTAC 1 cut(s) 522
RseI CAYNNNNRTG 3 cut(s) 189, 296, 713
SacI GAGCTC 1 cut(s) 807
SaqAI TTAA 1 cut(s) 881
SatI GCNGC 6 cut(s) 20, 91, 94, 115, 767, 854
Sau3AI GATC 3 cut(s) 400, 579, 933
Sau96I GGNCC 1 cut(s) 12
SchI GAGTC 1 cut(s) 715
ScrFI CCNGG 3 cut(s) 27, 67, 993
SduI GDGCHC 4 cut(s) 104, 807, 970, 1026
SfaNI GCATC 3 cut(s) 436, 667, 856
SfoI GGCGCC 1 cut(s) 211
SgrAI CRCCGGYG 1 cut(s) 143
SinI GGWCC 1 cut(s) 12
SmiMI CAYNNNNRTG 3 cut(s) 189, 296, 713
SnaBI TACGTA 1 cut(s) 625
Sse9I AATT 4 cut(s) 284, 659, 817, 838
SsiI CCGC 6 cut(s) 90, 115, 141, 362, 971, 983
SspDI GGCGCC 1 cut(s) 209
SspMI CTAG 1 cut(s) 378
SstI GAGCTC 1 cut(s) 807
StyD4I CCNGG 3 cut(s) 25, 65, 991
StyI CCWWGG 3 cut(s) 129, 205, 1027
TaaI ACNGT 3 cut(s) 155, 739, 886
TaiI ACGT 3 cut(s) 183, 627, 1012
TaqI TCGA 3 cut(s) 83, 163, 582
TaqII GACCGA 1 cut(s) 569
TasI AATT 4 cut(s) 284, 659, 817, 838
TauI GCSGC 2 cut(s) 93, 117
Tru1I TTAA 1 cut(s) 881
Tru9I TTAA 1 cut(s) 881
TscAI CASTG 3 cut(s) 124, 676, 691
TseFI GTSAC 1 cut(s) 978
TseI GCWGC 4 cut(s) 19, 93, 766, 853
Tsp45I GTSAC 1 cut(s) 978
TspDTI ATGAA 5 cut(s) 308, 366, 697, 851, 965
TspGWI ACGGA 2 cut(s) 67, 664
TspRI CASTG 3 cut(s) 124, 676, 691
Tth111I GACNNNGTC 1 cut(s) 10
VpaK11BI GGWCC 1 cut(s) 12
XapI RAATTY 1 cut(s) 838
XceI RCATGY 1 cut(s) 913
XcmI CCANNNNNNNNNTGG 2 cut(s) 212, 691
XspI CTAG 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.