Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008256

Physical Location & Seq

Genomic Coordinates Reverse (-)

60254025 .. 60254972

Gene Structure 948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G036620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCCCGGCGCTCAGTCCGTCTCGATGAGCGGCAGCATGGGCTCGCCGTCCAGCCGCAGCGAGCAGACCCCCGCCGGCGACAATTCGTCTCTCCGATTGAATCATCCCGACGTTAACGGCGACGATGCTGGCTCCGTTGGCAAAAAGAAGAAGAGAGGTCAACGGGCTGCAGGAGGCGATAAGAATGGAAGAGGACTGCGCCAATTTAGCATGAAAGTGTGCGAGAAAGTGGAGAGCAAGGGAAGAACCACTTATAACGAGGTTGCAGATGAACTTGTAGCAGAGTTTTCTGACCCTATCAATGGTGTTACATCTCCTGATCAGCAACAATATGATGAGAAGAACATCAGGCGGAGGGTATATGATGCCCTGAATGTTCTAATGGCAATGGATATTATATCCAAGGATAAAAAGGAAATACAATGGAAGGGTCTGCCTCGAACCAGCCTTAATGATATTGAAGAACTGAAGACTGAGCGCCTAGGACTAAGGGGTAGGATTGAAAAGAAAGCTGTCTATCTGCAAGAACTAGAGGAACAATATGTAGGTCTTCAAAACCTGATACAACGAAATGAGCAATTATACTGCTCTGGAGATGCTCCCAGTGGGGGTGTGTCTTTACCTTTCATTCTTGTGCAGACTCGCCCCCATGCAACTGTTGAGGTGGAAATATCAGAGGATATGCAACTGGTGCATTTTGACTTCAATAGCACCCCATTTGAGCTCCACGATGATAACTATGTCTTAAAGGCAATGAAATTCTGTGAAAGGTCGCAGGGTGATGGTAATCATGGTATGACACAAAACTACGTTGCAGATGGAGGAGAAGGGTCTAGCATGGCAGCCATGTATCAACAGCAGATCCCTCTTCCTCCGATGGTGAACACGCCTGTGAGGCCTCCCACCTCACCACCTCTTCCGGAATTTAAAAGCACGCGTGAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000278 GO:0000981 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031326 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0046982 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1901576 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04350 map04110 map04350

Pfam Domains

Protein Families

DP E2F_TDP

Protein Analysis

315

Amino Acids

34.9

Weight (kDa)

5.55

Isoelectric Point (pI)

53.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	64 - 144	2.6e-19	E2F/DP family winged-helix DNA-binding domain
DP	PF08781	152 - 265	1.1e-37	Transcription factor DP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03415 AT5G03415
fragaria_vesca	FvH4_7g33950 FvH4_7g33950 FvH4_7g33950
malus_domestica	MD01G1235700.v1.1 MD07G1308600.v1.1
prunus_persica	Prupe.2G325800_v2.0.a1 Prupe.2G325800_v2.0.a1 Prupe.2G325800_v2.0.a1
pyrus_communis	pycom01g24380 pycom07g28080
rosa_chinensis	RchiOBHm_Chr1g0384181
rosa_laevigata	RLG00000026062 RLG00000029262
rosa_multiflora	Rmu_sc0005139.1_g000007
rosa_rugosa	Rorug01G0445500
rosa_samantha	Rh1AG471000 Rh1BG428700 Rh1CG441400 Rh1DG461500
rosa_wichuraiana	Rw1G040150 Rw2G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	255
AccBSI	CCGCTC	1 cut(s)	30
AccII	CGCG	1 cut(s)	937
AccIII	TCCGGA	1 cut(s)	919
AciI	CCGC	4 cut(s)	30, 55, 72, 352
AclWI	GGATC	1 cut(s)	856
AcsI	RAATTY	2 cut(s)	758, 923
AcuI	CTGAAG	1 cut(s)	488
AfiI	CCNNNNNNNGG	2 cut(s)	302, 608
AflIII	ACRYGT	1 cut(s)	935
AgsI	TTSAA	5 cut(s)	100, 461, 503, 554, 706
AhdI	GACNNNNNGTC	1 cut(s)	85
AleI	CACNNNNGTG	1 cut(s)	890
AluBI	AGCT	2 cut(s)	512, 724
AluI	AGCT	2 cut(s)	512, 724
Alw21I	GWGCWC	1 cut(s)	726
Alw26I	GTCTC	2 cut(s)	25, 93
AlwI	GGATC	1 cut(s)	856
Aor13HI	TCCGGA	1 cut(s)	919
AoxI	GGCC	1 cut(s)	896
ApeKI	GCWGC	4 cut(s)	33, 57, 167, 842
ApoI	RAATTY	2 cut(s)	758, 923
AspA2I	CCTAGG	1 cut(s)	481
AspLEI	GCGC	3 cut(s)	11, 201, 480
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	3 cut(s)	791, 892, 900
AvrII	CCTAGG	1 cut(s)	481
BanII	GRGCYC	2 cut(s)	44, 726
BbsI	GAAGAC	2 cut(s)	476, 542
Bbv12I	GWGCWC	1 cut(s)	726
BbvI	GCAGC	4 cut(s)	45, 69, 154, 854
BccI	CCATC	3 cut(s)	776, 812, 871
BceAI	ACGGC	2 cut(s)	31, 133
BclI	TGATCA	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	6
BcoDI	GTCTC	2 cut(s)	25, 93
BfaI	CTAG	3 cut(s)	482, 530, 834
BfmI	CTRYAG	1 cut(s)	168
BfoI	RGCGCY	2 cut(s)	12, 481
BglI	GCCNNNNNGGC	1 cut(s)	895
BisI	GCNGC	6 cut(s)	31, 34, 55, 58, 168, 843
BlnI	CCTAGG	1 cut(s)	481
BlsI	GCNGC	6 cut(s)	32, 35, 56, 59, 169, 844
Bme1390I	CCNGG	1 cut(s)	6
BmeRI	GACNNNNNGTC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	6
BmrI	ACTGGG	1 cut(s)	597
BmsI	GCATC	3 cut(s)	115, 355, 586
BmuI	ACTGGG	1 cut(s)	597
BpiI	GAAGAC	2 cut(s)	476, 542
BpmI	CTGGAG	1 cut(s)	612
BpuMI	CCSGG	1 cut(s)	6
BsaBI	GATNNNNATC	1 cut(s)	786
BsaJI	CCNNGG	2 cut(s)	402, 481
BsaWI	WCCGGW	1 cut(s)	919
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 608
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	603, 693
Bse3DI	GCAATG	2 cut(s)	393, 759
Bse8I	GATNNNNATC	1 cut(s)	786
BseAI	TCCGGA	1 cut(s)	919
BseDI	CCNNGG	2 cut(s)	402, 481
BseGI	GGATG	1 cut(s)	103
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	2 cut(s)	302, 608
BseMI	GCAATG	2 cut(s)	393, 759
BseMII	CTCAG	2 cut(s)	26, 465
BseNI	ACTGG	2 cut(s)	603, 693
BseRI	GAGGAG	1 cut(s)	837
BseXI	GCAGC	4 cut(s)	45, 69, 154, 854
BsgI	GTGCAG	1 cut(s)	656
Bsh1236I	CGCG	1 cut(s)	937
BshFI	GGCC	1 cut(s)	898
BsiHKAI	GWGCWC	1 cut(s)	726
BsiSI	CCGG	3 cut(s)	6, 75, 920
BslI	CCNNNNNNNGG	2 cut(s)	302, 608
BsmAI	GTCTC	2 cut(s)	25, 93
BsmBI	CGTCTC	2 cut(s)	25, 93
BsnI	GGCC	1 cut(s)	898
Bsp1286I	GDGCHC	2 cut(s)	44, 726
Bsp13I	TCCGGA	1 cut(s)	919
Bsp143I	GATC	2 cut(s)	319, 861
BspACI	CCGC	4 cut(s)	30, 55, 72, 352
BspANI	GGCC	1 cut(s)	898
BspCNI	CTCAG	2 cut(s)	25, 466
BspEI	TCCGGA	1 cut(s)	919
BspFNI	CGCG	1 cut(s)	937
BspLI	GGNNCC	1 cut(s)	133
BspMAI	CTGCAG	1 cut(s)	172
BspPI	GGATC	1 cut(s)	856
BsrBI	CCGCTC	1 cut(s)	30
BsrDI	GCAATG	2 cut(s)	393, 759
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	603, 693
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	402, 481
BssMI	GATC	2 cut(s)	319, 861
BssT1I	CCWWGG	2 cut(s)	402, 481
Bst4CI	ACNGT	1 cut(s)	658
Bst6I	CTCTTC	4 cut(s)	146, 184, 873, 921
BstAPI	GCANNNNNTGC	1 cut(s)	691
BstC8I	GCNNGC	5 cut(s)	44, 62, 76, 130, 935
BstDEI	CTNAG	3 cut(s)	12, 474, 488
BstF5I	GGATG	1 cut(s)	103
BstFNI	CGCG	1 cut(s)	937
BstH2I	RGCGCY	2 cut(s)	12, 481
BstHHI	GCGC	3 cut(s)	11, 201, 480
BstKTI	GATC	2 cut(s)	322, 864
BstMAI	GTCTC	2 cut(s)	25, 93
BstMBI	GATC	2 cut(s)	319, 861
BstMWI	GCNNNNNNNGC	5 cut(s)	39, 138, 207, 691, 895
BstSCI	CCNGG	1 cut(s)	4
BstSFI	CTRYAG	1 cut(s)	168
BstUI	CGCG	1 cut(s)	937
BstV1I	GCAGC	4 cut(s)	45, 69, 154, 854
BstV2I	GAAGAC	2 cut(s)	476, 542
BstX2I	RGATCY	1 cut(s)	861
BstYI	RGATCY	1 cut(s)	861
BsuRI	GGCC	1 cut(s)	898
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	610
Cac8I	GCNNGC	5 cut(s)	44, 62, 76, 130, 935
CfoI	GCGC	3 cut(s)	11, 201, 480
Cfr10I	RCCGGY	1 cut(s)	74
CviAII	CATG	7 cut(s)	37, 211, 650, 791, 838, 847, 945
CviJI	RGCY	9 cut(s)	42, 54, 132, 167, 447, 512, 724, 845, 898
CviKI_1	RGCY	9 cut(s)	42, 54, 132, 167, 447, 512, 724, 845, 898
DdeI	CTNAG	3 cut(s)	12, 474, 488
DpnI	GATC	2 cut(s)	321, 863
DpnII	GATC	2 cut(s)	319, 861
DraI	TTTAAA	1 cut(s)	928
DriI	GACNNNNNGTC	1 cut(s)	85
Eam1104I	CTCTTC	4 cut(s)	146, 184, 873, 921
Eam1105I	GACNNNNNGTC	1 cut(s)	85
EarI	CTCTTC	4 cut(s)	146, 184, 873, 921
EciI	GGCGGA	1 cut(s)	367
Ecl136II	GAGCTC	1 cut(s)	724
Eco130I	CCWWGG	2 cut(s)	402, 481
Eco147I	AGGCCT	1 cut(s)	898
Eco24I	GRGCYC	2 cut(s)	44, 726
Eco53kI	GAGCTC	1 cut(s)	724
Eco57I	CTGAAG	1 cut(s)	488
EcoICRI	GAGCTC	1 cut(s)	724
EcoT14I	CCWWGG	2 cut(s)	402, 481
EcoT38I	GRGCYC	2 cut(s)	44, 726
ErhI	CCWWGG	2 cut(s)	402, 481
Esp3I	CGTCTC	2 cut(s)	25, 93
FaeI	CATG	7 cut(s)	40, 214, 653, 794, 841, 850, 948
FalI	AAGNNNNNCTT	2 cut(s)	235, 267
FatI	CATG	7 cut(s)	36, 210, 649, 790, 837, 846, 944
FauI	CCCGC	1 cut(s)	79
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	6 cut(s)	31, 34, 55, 58, 168, 843
FokI	GGATG	1 cut(s)	90
FriOI	GRGCYC	2 cut(s)	44, 726
Fsp4HI	GCNGC	6 cut(s)	31, 34, 55, 58, 168, 843
FspBI	CTAG	3 cut(s)	482, 530, 834
GlaI	GCGC	3 cut(s)	10, 200, 479
GluI	GCNGC	6 cut(s)	31, 34, 55, 58, 168, 843
GsuI	CTGGAG	1 cut(s)	612
HaeII	RGCGCY	2 cut(s)	12, 481
HaeIII	GGCC	1 cut(s)	898
HapII	CCGG	3 cut(s)	6, 75, 920
HhaI	GCGC	3 cut(s)	11, 201, 480
Hin1II	CATG	7 cut(s)	40, 214, 653, 794, 841, 850, 948
Hin6I	GCGC	3 cut(s)	9, 199, 478
HinP1I	GCGC	3 cut(s)	9, 199, 478
HincII	GTYRAC	2 cut(s)	115, 161
HindII	GTYRAC	2 cut(s)	115, 161
HinfI	GANTC	2 cut(s)	100, 640
HpaI	GTTAAC	1 cut(s)	115
HpaII	CCGG	3 cut(s)	6, 75, 920
HphI	GGTGA	3 cut(s)	791, 892, 900
Hpy166II	GTNNAC	3 cut(s)	115, 161, 883
Hpy188I	TCNGA	4 cut(s)	95, 292, 676, 876
Hpy188III	TCNNGA	5 cut(s)	22, 107, 317, 591, 920
Hpy8I	GTNNAC	3 cut(s)	115, 161, 883
Hpy99I	CGWCG	2 cut(s)	113, 125
HpyAV	CCTTC	2 cut(s)	421, 821
HpyCH4III	ACNGT	1 cut(s)	658
HpyCH4IV	ACGT	2 cut(s)	111, 810
HpyCH4V	TGCA	8 cut(s)	170, 266, 523, 637, 653, 685, 694, 815
HpyF10VI	GCNNNNNNNGC	5 cut(s)	39, 138, 207, 691, 895
HpyF3I	CTNAG	3 cut(s)	12, 474, 488
HpySE526I	ACGT	2 cut(s)	111, 810
Hsp92II	CATG	7 cut(s)	40, 214, 653, 794, 841, 850, 948
HspAI	GCGC	3 cut(s)	9, 199, 478
Kpn2I	TCCGGA	1 cut(s)	919
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Ksp22I	TGATCA	1 cut(s)	319
KspAI	GTTAAC	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	319, 861
LmnI	GCTCC	3 cut(s)	137, 604, 729
Lsp1109I	GCAGC	4 cut(s)	45, 69, 154, 854
LweI	GCATC	3 cut(s)	115, 355, 586
MaeI	CTAG	3 cut(s)	482, 530, 834
MaeII	ACGT	2 cut(s)	111, 810
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	2 cut(s)	321, 863
MbiI	CCGCTC	1 cut(s)	30
MboI	GATC	2 cut(s)	319, 861
MflI	RGATCY	1 cut(s)	861
MhlI	GDGCHC	2 cut(s)	44, 726
MluCI	AATT	5 cut(s)	82, 203, 578, 758, 923
MluI	ACGCGT	1 cut(s)	935
MlyI	GAGTC	1 cut(s)	634
MreI	CGCCGGCG	1 cut(s)	74
MroI	TCCGGA	1 cut(s)	919
MroNI	GCCGGC	1 cut(s)	74
MseI	TTAA	4 cut(s)	114, 450, 746, 927
MslI	CAYNNNNRTG	3 cut(s)	215, 632, 890
MspI	CCGG	3 cut(s)	6, 75, 920
MspR9I	CCNGG	1 cut(s)	6
MvnI	CGCG	1 cut(s)	937
MwoI	GCNNNNNNNGC	5 cut(s)	39, 138, 207, 691, 895
NaeI	GCCGGC	1 cut(s)	76
NciI	CCSGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	319, 861
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	7 cut(s)	40, 214, 653, 794, 841, 850, 948
NlaIV	GGNNCC	1 cut(s)	133
OliI	CACNNNNGTG	1 cut(s)	890
PceI	AGGCCT	1 cut(s)	898
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PdiI	GCCGGC	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	100
PkrI	GCNGC	6 cut(s)	32, 35, 56, 59, 169, 844
PleI	GAGTC	1 cut(s)	634
PpsI	GAGTC	1 cut(s)	634
PsiI	TTATAA	1 cut(s)	255
Psp124BI	GAGCTC	1 cut(s)	726
PspN4I	GGNNCC	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	861
RseI	CAYNNNNRTG	3 cut(s)	215, 632, 890
SacI	GAGCTC	1 cut(s)	726
SaqAI	TTAA	4 cut(s)	114, 450, 746, 927
SatI	GCNGC	6 cut(s)	31, 34, 55, 58, 168, 843
Sau3AI	GATC	2 cut(s)	319, 861
SchI	GAGTC	1 cut(s)	634
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	2 cut(s)	44, 726
SfaNI	GCATC	3 cut(s)	115, 355, 586
SfcI	CTRYAG	1 cut(s)	168
SgrAI	CRCCGGYG	1 cut(s)	74
SmiMI	CAYNNNNRTG	3 cut(s)	215, 632, 890
Sse9I	AATT	5 cut(s)	82, 203, 578, 758, 923
SseBI	AGGCCT	1 cut(s)	898
SsiI	CCGC	4 cut(s)	30, 55, 72, 352
SspMI	CTAG	3 cut(s)	482, 530, 834
SstI	GAGCTC	1 cut(s)	726
StuI	AGGCCT	1 cut(s)	898
StyD4I	CCNGG	1 cut(s)	4
StyI	CCWWGG	2 cut(s)	402, 481
TaaI	ACNGT	1 cut(s)	658
TaiI	ACGT	2 cut(s)	114, 813
TaqI	TCGA	2 cut(s)	23, 439
TasI	AATT	5 cut(s)	82, 203, 578, 758, 923
TauI	GCSGC	2 cut(s)	33, 57
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	4 cut(s)	114, 450, 746, 927
Tru9I	TTAA	4 cut(s)	114, 450, 746, 927
TscAI	CASTG	1 cut(s)	610
TseI	GCWGC	4 cut(s)	33, 57, 167, 842
TspDTI	ATGAA	4 cut(s)	227, 285, 616, 770
TspGWI	ACGGA	2 cut(s)	7, 124
TspRI	CASTG	1 cut(s)	610
XapI	RAATTY	2 cut(s)	758, 923
XmaJI	CCTAGG	1 cut(s)	481
XspI	CTAG	3 cut(s)	482, 530, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.