Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008256

Physical Location & Seq

Genomic Coordinates Forward (+)

27549684 .. 27553227

Gene Structure 3544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g28080.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGGACAAGGTCCCAGCAGCAACCAGGCCGAGAGCGAGTAGGGCAGGACGACGACGACATGGCCGGGGGTCAGTCCGTCTCCATGAGCGGCAGCGTGGGCTCGCCCTCCAGCCGCAGCGAGCAGACCATGGCCACGCCCGTCGGCGACAACAGTTTTCTCCGACTGAACCATCCCGACGTTCACGGCGACGACGCTGGCTCCCAAGGCGCCGTTGGTAGCAAGAAGAAGAAGCGAGGTCAACGCGCCGTGGCAGGTGATAAGAATGGAAGAGGACTACGCCAATTCAGCATGAAAGTGTGCGAGAAAGTGGAGAGCAAAGGAAGAACCACTTATAATGAGGTTGCAGATGAACTTGTAGCGGAGTTTGCTGACCCTAGCAATGCTGTTACATCCCCTGATCAGCAGCAACAAGATGATGAGAAGAACATCAGGCGAAGGGTATATGATGCCCTCAATGTTCTTATGGCAATGGATATTATATCTAAAGATAAAAAAGAAATACAATGGAAGGGTTTGCCTCGTACAAGCCTGAATGATATTGAAGAACTGAAGACTGAGCGCATGGGATTGAGAAATAGGATCGAAAAGAAAGCTGCCTATCTACAAGAGCTGGAGGAACAATACGTGGGTCTTCAAAATCTGATACAACGGAATGAGCAATTATACCACTCTGGAGATGCGCCCAGTGGAGGTGTGGCTTTACCTTTCATTCTTGTGCAGACTCGCCCTCATGCAACTGTCGAGGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGACTTCAATAGCACCCCATTTGAGCTCCATGATGACAACTATGTTTTGAAGGCAATGAAGTTTTGTAATAGGCAGCAGGGTGATGATGCGACACAAAATTTAATTGTAGATGGAGGCGAAGGTTGTAGCATGTCGGACATGTATCAGCCACAAATCCCTCTTTCTTCAATGTTAAACACGCCAATTAGACCACCACCCATGTCACCACCCCTTCCCGGAATACTGAAAGCACGTGTCAAGCATGAGCACCATGGACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000278 GO:0000981 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031326 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0046982 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1901576 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04350 map04110 map04350

Pfam Domains

Protein Families

DP E2F_TDP

Protein Analysis

348

Amino Acids

38.53

Weight (kDa)

5.66

Isoelectric Point (pI)

54.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03415 AT5G03415
fragaria_vesca	FvH4_7g33950 FvH4_7g33950 FvH4_7g33950
malus_domestica	MD01G1235700.v1.1 MD07G1308600.v1.1
prunus_persica	Prupe.2G325800_v2.0.a1 Prupe.2G325800_v2.0.a1 Prupe.2G325800_v2.0.a1
pyrus_communis	pycom01g24380 pycom07g28080
rosa_chinensis	RchiOBHm_Chr1g0384181
rosa_laevigata	RLG00000026062 RLG00000029262
rosa_multiflora	Rmu_sc0005139.1_g000007
rosa_rugosa	Rorug01G0445500
rosa_samantha	Rh1AG471000 Rh1BG428700 Rh1CG441400 Rh1DG461500
rosa_wichuraiana	Rw1G040150 Rw2G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
AarI	CACCTGC	1 cut(s)	245
Acc36I	ACCTGC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	209
AccBSI	CCGCTC	1 cut(s)	90
AccII	CGCG	1 cut(s)	246
AciI	CCGC	3 cut(s)	90, 115, 362
AclWI	GGATC	1 cut(s)	590
AcoI	YGGCCR	2 cut(s)	63, 132
AcsI	RAATTY	1 cut(s)	880
AcuI	CTGAAG	1 cut(s)	572
AcvI	CACGTG	1 cut(s)	1016
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	1 cut(s)	526
AfiI	CCNNNNNNNGG	2 cut(s)	692, 998
AflIII	ACRYGT	2 cut(s)	921, 1015
AgsI	TTSAA	5 cut(s)	545, 638, 790, 832, 951
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	4 cut(s)	596, 613, 772, 808
AluI	AGCT	4 cut(s)	596, 613, 772, 808
Alw21I	GWGCWC	2 cut(s)	810, 1032
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	1 cut(s)	590
AoxI	GGCC	3 cut(s)	28, 63, 132
ApeKI	GCWGC	7 cut(s)	19, 93, 117, 406, 596, 769, 856
ApoI	RAATTY	1 cut(s)	880
AspLEI	GCGC	4 cut(s)	212, 248, 564, 685
AspS9I	GGNCC	1 cut(s)	12
AsuC2I	CCSGG	2 cut(s)	67, 999
AsuHPI	GGTGA	3 cut(s)	269, 875, 978
AvaII	GGWCC	1 cut(s)	12
BalI	TGGCCA	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	209
BanII	GRGCYC	2 cut(s)	104, 810
BbrPI	CACGTG	1 cut(s)	1016
BbsI	GAAGAC	2 cut(s)	560, 626
Bbv12I	GWGCWC	2 cut(s)	810, 1032
BbvI	GCAGC	7 cut(s)	31, 105, 129, 418, 583, 781, 868
BccI	CCATC	2 cut(s)	180, 887
BceAI	ACGGC	3 cut(s)	197, 202, 233
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	1 cut(s)	400
BcnI	CCSGG	2 cut(s)	67, 999
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	378
BfoI	RGCGCY	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	245
BisI	GCNGC	9 cut(s)	20, 91, 94, 115, 118, 407, 597, 770, 857
BlsI	GCNGC	9 cut(s)	21, 92, 95, 116, 119, 408, 598, 771, 858
Bme1390I	CCNGG	3 cut(s)	27, 67, 999
Bme18I	GGWCC	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	3 cut(s)	14, 202, 211
BmrFI	CCNGG	3 cut(s)	27, 67, 999
BmrI	ACTGGG	1 cut(s)	681
BmsI	GCATC	3 cut(s)	439, 670, 859
BmuI	ACTGGG	1 cut(s)	681
BpiI	GAAGAC	2 cut(s)	560, 626
BpmI	CTGGAG	3 cut(s)	94, 635, 696
BpuMI	CCSGG	2 cut(s)	67, 999
BsaAI	YACGTR	2 cut(s)	628, 1016
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	5 cut(s)	66, 129, 205, 249, 1033
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bsc4I	CCNNNNNNNGG	2 cut(s)	692, 998
Bse1I	ACTGG	1 cut(s)	687
Bse3DI	GCAATG	3 cut(s)	388, 477, 843
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	5 cut(s)	66, 129, 205, 249, 1033
BseGI	GGATG	2 cut(s)	172, 392
BseLI	CCNNNNNNNGG	2 cut(s)	692, 998
BseMI	GCAATG	3 cut(s)	388, 477, 843
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	1 cut(s)	687
BseXI	GCAGC	7 cut(s)	31, 105, 129, 418, 583, 781, 868
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	740
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	3 cut(s)	30, 65, 134
BshNI	GGYRCC	1 cut(s)	209
BsiHKAI	GWGCWC	2 cut(s)	810, 1032
BsiSI	CCGG	2 cut(s)	66, 999
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	692, 998
BsmAI	GTCTC	1 cut(s)	85
BsmBI	CGTCTC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	3 cut(s)	30, 65, 134
Bsp1286I	GDGCHC	3 cut(s)	104, 810, 1032
Bsp143I	GATC	2 cut(s)	400, 582
Bsp19I	CCATGG	2 cut(s)	129, 1033
BspACI	CCGC	3 cut(s)	90, 115, 362
BspANI	GGCC	3 cut(s)	30, 65, 134
BspCNI	CTCAG	1 cut(s)	550
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	3 cut(s)	14, 202, 211
BspMI	ACCTGC	1 cut(s)	245
BspPI	GGATC	1 cut(s)	590
BspT107I	GGYRCC	1 cut(s)	209
BsrBI	CCGCTC	1 cut(s)	90
BsrDI	GCAATG	3 cut(s)	388, 477, 843
BsrI	ACTGG	1 cut(s)	687
BssECI	CCNNGG	5 cut(s)	66, 129, 205, 249, 1033
BssMI	GATC	2 cut(s)	400, 582
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	3 cut(s)	129, 205, 1033
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	155, 742
Bst6I	CTCTTC	1 cut(s)	265
BstACI	GRCGYC	1 cut(s)	210
BstAPI	GCANNNNNTGC	1 cut(s)	775
BstBAI	YACGTR	2 cut(s)	628, 1016
BstC8I	GCNNGC	3 cut(s)	104, 122, 199
BstDEI	CTNAG	1 cut(s)	558
BstDSI	CCRYGG	3 cut(s)	129, 249, 1033
BstF5I	GGATG	2 cut(s)	172, 392
BstFNI	CGCG	1 cut(s)	246
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	4 cut(s)	212, 248, 564, 685
BstKTI	GATC	2 cut(s)	403, 585
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	2 cut(s)	400, 582
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 99, 207, 288, 368, 775
BstNI	CCWGG	1 cut(s)	27
BstNSI	RCATGY	2 cut(s)	916, 925
BstSCI	CCNGG	3 cut(s)	25, 65, 997
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	7 cut(s)	31, 105, 129, 418, 583, 781, 868
BstV2I	GAAGAC	2 cut(s)	560, 626
BsuRI	GGCC	3 cut(s)	30, 65, 134
BtgI	CCRYGG	3 cut(s)	129, 249, 1033
BtsCI	GGATG	2 cut(s)	172, 392
BtsIMutI	CAGTG	1 cut(s)	694
BveI	ACCTGC	1 cut(s)	245
Cac8I	GCNNGC	3 cut(s)	104, 122, 199
CfoI	GCGC	4 cut(s)	212, 248, 564, 685
Cfr13I	GGNCC	1 cut(s)	12
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	525
CviQI	GTAC	1 cut(s)	525
DdeI	CTNAG	1 cut(s)	558
DinI	GGCGCC	1 cut(s)	211
DpnI	GATC	2 cut(s)	402, 584
DpnII	GATC	2 cut(s)	400, 582
EaeI	YGGCCR	2 cut(s)	63, 132
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
Ecl136II	GAGCTC	1 cut(s)	808
Eco130I	CCWWGG	3 cut(s)	129, 205, 1033
Eco24I	GRGCYC	2 cut(s)	104, 810
Eco47I	GGWCC	1 cut(s)	12
Eco53kI	GAGCTC	1 cut(s)	808
Eco57I	CTGAAG	1 cut(s)	572
Eco72I	CACGTG	1 cut(s)	1016
EcoICRI	GAGCTC	1 cut(s)	808
EcoO109I	RGGNCCY	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	3 cut(s)	129, 205, 1033
EcoT38I	GRGCYC	2 cut(s)	104, 810
EgeI	GGCGCC	1 cut(s)	211
EheI	GGCGCC	1 cut(s)	211
ErhI	CCWWGG	3 cut(s)	129, 205, 1033
Esp3I	CGTCTC	1 cut(s)	85
FalI	AAGNNNNNCTT	2 cut(s)	316, 348
FaqI	GGGAC	1 cut(s)	19
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	9 cut(s)	20, 91, 94, 115, 118, 407, 597, 770, 857
FokI	GGATG	2 cut(s)	159, 379
FriOI	GRGCYC	2 cut(s)	104, 810
Fsp4HI	GCNGC	9 cut(s)	20, 91, 94, 115, 118, 407, 597, 770, 857
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	4 cut(s)	211, 247, 563, 684
GluI	GCNGC	9 cut(s)	20, 91, 94, 115, 118, 407, 597, 770, 857
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	3 cut(s)	94, 635, 696
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	3 cut(s)	30, 65, 134
HapII	CCGG	2 cut(s)	66, 999
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	4 cut(s)	212, 248, 564, 685
Hin1I	GRCGYC	1 cut(s)	210
Hin6I	GCGC	4 cut(s)	210, 246, 562, 683
HinP1I	GCGC	4 cut(s)	210, 246, 562, 683
HincII	GTYRAC	1 cut(s)	242
HindII	GTYRAC	1 cut(s)	242
HinfI	GANTC	1 cut(s)	724
HpaII	CCGG	2 cut(s)	66, 999
HphI	GGTGA	3 cut(s)	269, 875, 978
Hpy166II	GTNNAC	2 cut(s)	184, 242
Hpy188I	TCNGA	4 cut(s)	164, 645, 760, 919
Hpy188III	TCNNGA	2 cut(s)	176, 675
Hpy8I	GTNNAC	2 cut(s)	184, 242
Hpy99I	CGWCG	6 cut(s)	56, 59, 146, 182, 194, 197
HpyAV	CCTTC	5 cut(s)	432, 505, 826, 896, 1004
HpyCH4III	ACNGT	2 cut(s)	155, 742
HpyCH4IV	ACGT	3 cut(s)	180, 627, 1015
HpyCH4V	TGCA	5 cut(s)	347, 721, 737, 769, 778
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 99, 207, 288, 368, 775
HpyF3I	CTNAG	1 cut(s)	558
HpySE526I	ACGT	3 cut(s)	180, 627, 1015
Hsp92I	GRCGYC	1 cut(s)	210
HspAI	GCGC	4 cut(s)	210, 246, 562, 683
KasI	GGCGCC	1 cut(s)	209
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	2 cut(s)	400, 582
LmnI	GCTCC	2 cut(s)	206, 813
Lsp1109I	GCAGC	7 cut(s)	31, 105, 129, 418, 583, 781, 868
LweI	GCATC	3 cut(s)	439, 670, 859
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	3 cut(s)	180, 627, 1015
MaeIII	GTNAC	2 cut(s)	388, 984
MalI	GATC	2 cut(s)	402, 584
MbiI	CCGCTC	1 cut(s)	90
MboI	GATC	2 cut(s)	400, 582
MhlI	GDGCHC	3 cut(s)	104, 810, 1032
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	5 cut(s)	284, 662, 880, 885, 966
MluNI	TGGCCA	1 cut(s)	134
Mly113I	GGCGCC	1 cut(s)	210
MlyI	GAGTC	1 cut(s)	718
MmeI	TCCRAC	2 cut(s)	187, 897
Mox20I	TGGCCA	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	2 cut(s)	884, 956
MslI	CAYNNNNRTG	2 cut(s)	296, 716
Msp20I	TGGCCA	1 cut(s)	134
MspI	CCGG	2 cut(s)	66, 999
MspR9I	CCNGG	3 cut(s)	27, 67, 999
MvaI	CCWGG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	6 cut(s)	43, 99, 207, 288, 368, 775
NarI	GGCGCC	1 cut(s)	210
NciI	CCSGG	2 cut(s)	67, 999
NcoI	CCATGG	2 cut(s)	129, 1033
NdeII	GATC	2 cut(s)	400, 582
NlaIV	GGNNCC	3 cut(s)	14, 202, 211
NmeAIII	GCCGAG	1 cut(s)	56
NmuCI	GTSAC	1 cut(s)	984
NspI	RCATGY	2 cut(s)	916, 925
PaqCI	CACCTGC	1 cut(s)	245
PciI	ACATGT	1 cut(s)	921
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PflFI	GACNNNGTC	1 cut(s)	10
PfoI	TCCNGGA	1 cut(s)	997
PkrI	GCNGC	9 cut(s)	21, 92, 95, 116, 119, 408, 598, 771, 858
PleI	GAGTC	1 cut(s)	718
PluTI	GGCGCC	1 cut(s)	213
PmaCI	CACGTG	1 cut(s)	1016
PmlI	CACGTG	1 cut(s)	1016
PpsI	GAGTC	1 cut(s)	718
Ppu21I	YACGTR	2 cut(s)	628, 1016
PpuMI	RGGWCCY	1 cut(s)	12
PscI	ACATGT	1 cut(s)	921
PsiI	TTATAA	1 cut(s)	336
Psp124BI	GAGCTC	1 cut(s)	810
Psp5II	RGGWCCY	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	25
PspCI	CACGTG	1 cut(s)	1016
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	3 cut(s)	14, 202, 211
PspPI	GGNCC	1 cut(s)	12
PspPPI	RGGWCCY	1 cut(s)	12
PsyI	GACNNNGTC	1 cut(s)	10
RsaI	GTAC	1 cut(s)	526
RsaNI	GTAC	1 cut(s)	525
RseI	CAYNNNNRTG	2 cut(s)	296, 716
SacI	GAGCTC	1 cut(s)	810
SaqAI	TTAA	2 cut(s)	884, 956
SatI	GCNGC	9 cut(s)	20, 91, 94, 115, 118, 407, 597, 770, 857
Sau3AI	GATC	2 cut(s)	400, 582
Sau96I	GGNCC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	718
ScrFI	CCNGG	3 cut(s)	27, 67, 999
SduI	GDGCHC	3 cut(s)	104, 810, 1032
SfaNI	GCATC	3 cut(s)	439, 670, 859
SfoI	GGCGCC	1 cut(s)	211
SinI	GGWCC	1 cut(s)	12
SmiMI	CAYNNNNRTG	2 cut(s)	296, 716
Sse9I	AATT	5 cut(s)	284, 662, 880, 885, 966
SsiI	CCGC	3 cut(s)	90, 115, 362
SspDI	GGCGCC	1 cut(s)	209
SspMI	CTAG	1 cut(s)	378
SstI	GAGCTC	1 cut(s)	810
StyD4I	CCNGG	3 cut(s)	25, 65, 997
StyI	CCWWGG	3 cut(s)	129, 205, 1033
TaaI	ACNGT	2 cut(s)	155, 742
TaiI	ACGT	3 cut(s)	183, 630, 1018
TaqI	TCGA	2 cut(s)	585, 744
TasI	AATT	5 cut(s)	284, 662, 880, 885, 966
TauI	GCSGC	2 cut(s)	93, 117
Tru1I	TTAA	2 cut(s)	884, 956
Tru9I	TTAA	2 cut(s)	884, 956
TscAI	CASTG	1 cut(s)	694
TseFI	GTSAC	1 cut(s)	984
TseI	GCWGC	7 cut(s)	19, 93, 117, 406, 596, 769, 856
Tsp45I	GTSAC	1 cut(s)	984
TspDTI	ATGAA	4 cut(s)	308, 366, 700, 854
TspGWI	ACGGA	2 cut(s)	67, 667
TspRI	CASTG	1 cut(s)	694
Tth111I	GACNNNGTC	1 cut(s)	10
VpaK11BI	GGWCC	1 cut(s)	12
XapI	RAATTY	1 cut(s)	880
XceI	RCATGY	2 cut(s)	916, 925
XcmI	CCANNNNNNNNNTGG	2 cut(s)	212, 694
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.