AT5G04190

phytochrome kinase substrate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014149
Physical Location & Seq
Forward (+)
1150886 .. 1152627
1742 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G04190.1

Sequence Viewer

Length: 1221 bp
ATGGCGCAAACTACTGTCACTGTAGTCGCGACCAAACGCGATGCTCTTGATCCTTACATCAAGATTCTTCAGAATCGATCAAACGACATCGATGTCTCCTTCTCTTCTTACCTCAAACCAGACAACAACGAACAACAACAAAAGGAGAATGAAGATACTGAGCTAAGTATCTTCGAAGCTCGAAGTTACTTTAGCGAAAACGGAAGCAACGATAGTCGATGCCAGACGAGGAATCTAAGTGGTCCAAGATTTTCTTCGGTCGCATCTGCAAAAGTGTCTTCTTTTACCGTGGGACAAACGGCATCCTCTGAAGCTAGCTGGAACAGCCAAACCGGTTTGCTCTCTAACAAAAACCGCCAAGGATCGGACAGAGATGGACGTAGAAGCAGCAAGAAAGGACCAAGATGGTTTTTTAGACGCAGGGCTTGTCCATGTTCTAGCTCCAAGTCCGTTCAGGTCCAAGAATCCAAACCAAGAATCGCAGTGCCCAAAACCGGTTCTGACCGAATCGTCTCGAACCGAATAGTTCATAGTCATCAGACGATATCTTCACCTGAGCCAATAAGATTAACGATCCCTTCAAACACTGTGACTCGGTCCATCGATTACACTGCAAACAAAGAAGCTAGAGCTCCAGTTAGTAATTTTAGCTTCCCAACTCTAAACGAAACTTCACAATTATCAGAAAATCCCAAGAATCCGGTTTTGAATCATATTAAACCGGTACGAATTGAACCGGCTCTGCTTCCGATTAAACCGGTTCTGAATCCTACGAGTCCCAAGGGAGTCATCATAGACGAAGAAGCCACAAGCGACGCAAGCTCCGATCTTTTTGAGATAGAGAGCTTCTCTACTCAAACCGCAGCTCGTCCATGGGCTCCACCAGTACGGGACTCGATGGAAGAGACCGTGTCTGAGTACGGTTACGAGCCAAGCGAAGCAAGTGTTACTTGGAGCGTTATGACCGCCGAGCCGGCCTCGGCCGTTGCAGCTAACTTCTCAAGAATTGCCTTGTCGTCATCGTCTACAGCATTTAGTGGTTACGATAAGAAGAGAACCGGTTTGTTGAACTGTCATTGTGAGAAGGCGGTTATGGTTAACGGCGATAAGCGTTTAGTGCAACCGGTTAAGAGCGTTGGTGTTCAAAACGACGTCGCGGGAAAGGTGTTGTGCAACAATGGCAGTTCTAAACTAAGCGTGACGAGTAGACCAAGGCAATGA

Protein Analysis

406

Amino Acids

44.46

Weight (kDa)

9.22

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014149)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04190
fragaria_vesca FvH4_4g10470
malus_domestica MD12G1110900.v1.1
prunus_persica Prupe.7G023100_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0495011
rosa_laevigata RLG00000022656
rosa_multiflora Rmu_co8188214.1_g000001 Rmu_ssc0000058.1_g000001
rosa_roxburghii Rroxscaffold_4G00319360 Rroxscaffold_6G00390850
rosa_rugosa Rorug03G0269300
rosa_samantha Rh3BG353200 Rh3CG313700 Rh3CG350100 Rh3CG350300 Rh3DG352600
rosa_wichuraiana Rw3G027740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 92, 509
AatII GACGTC 1 cut(s) 1155
AccI GTMKAC 2 cut(s) 1025, 1207
AccII CGCG 3 cut(s) 29, 39, 1157
AciI CCGC 5 cut(s) 355, 861, 966, 1088, 1157
AclWI GGATC 3 cut(s) 44, 370, 568
AcoI YGGCCR 1 cut(s) 981
AcuI CTGAAG 2 cut(s) 53, 330
AcyI GRCGYC 1 cut(s) 1152
AfaI GTAC 3 cut(s) 726, 888, 920
AfiI CCNNNNNNNGG 2 cut(s) 364, 494
AgeI ACCGGT 6 cut(s) 332, 494, 721, 757, 1058, 1123
AgsI TTSAA 5 cut(s) 582, 709, 734, 1069, 1145
AjuI GAANNNNNNNTTGG 2 cut(s) 238, 270
Alw21I GWGCWC 1 cut(s) 634
Alw26I GTCTC 3 cut(s) 100, 517, 899
AlwI GGATC 3 cut(s) 44, 370, 568
AoxI GGCC 2 cut(s) 975, 981
ApeKI GCWGC 3 cut(s) 387, 863, 989
AsiGI ACCGGT 6 cut(s) 332, 494, 721, 757, 1058, 1123
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 4 cut(s) 242, 398, 457, 597
AsuHPI GGTGA 1 cut(s) 543
AsuII TTCGAA 1 cut(s) 174
AsuNHI GCTAGC 1 cut(s) 314
AvaII GGWCC 4 cut(s) 242, 398, 457, 597
BaeGI GKGCMC 1 cut(s) 489
BanII GRGCYC 2 cut(s) 634, 880
BbsI GAAGAC 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 634
BbvI GCAGC 3 cut(s) 399, 875, 1001
BccI CCATC 4 cut(s) 368, 399, 608, 892
BceAI ACGGC 3 cut(s) 315, 968, 1117
BcgI CGANNNNNNTGC 2 cut(s) 593, 627
BcoDI GTCTC 3 cut(s) 100, 517, 899
BfaI CTAG 3 cut(s) 315, 438, 627
BfmI CTRYAG 2 cut(s) 21, 1026
BglI GCCNNNNNGGC 1 cut(s) 974
BisI GCNGC 3 cut(s) 388, 864, 990
BlsI GCNGC 3 cut(s) 389, 865, 991
Bme18I GGWCC 4 cut(s) 242, 398, 457, 597
BmgT120I GGNCC 4 cut(s) 242, 398, 457, 597
BmiI GGNNCC 1 cut(s) 879
BmsI GCATC 4 cut(s) 31, 209, 272, 311
BmtI GCTAGC 1 cut(s) 318
BpiI GAAGAC 1 cut(s) 270
BplI GAGNNNNNCTC 4 cut(s) 833, 865, 962, 994
BpmI CTGGAG 1 cut(s) 618
Bpu10I CCTNAGC 1 cut(s) 555
Bpu14I TTCGAA 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 985
Bsa29I ATCGAT 3 cut(s) 76, 90, 603
BsaHI GRCGYC 1 cut(s) 1152
BsaI GGTCTC 1 cut(s) 899
BsaJI CCNNGG 6 cut(s) 288, 358, 780, 872, 978, 1211
BsaWI WCCGGW 7 cut(s) 332, 494, 700, 721, 757, 1058, 1123
BsaXI ACNNNNNCTCC 2 cut(s) 806, 836
Bsc4I CCNNNNNNNGG 2 cut(s) 364, 494
Bse118I RCCGGY 8 cut(s) 332, 494, 721, 736, 757, 973, 1058, 1123
Bse1I ACTGG 2 cut(s) 635, 884
BseCI ATCGAT 3 cut(s) 76, 90, 603
BseDI CCNNGG 6 cut(s) 288, 358, 780, 872, 978, 1211
BseGI GGATG 1 cut(s) 302
BseLI CCNNNNNNNGG 2 cut(s) 364, 494
BseMII CTCAG 3 cut(s) 150, 546, 906
BseNI ACTGG 2 cut(s) 635, 884
BseSI GKGCMC 1 cut(s) 489
BseX3I CGGCCG 1 cut(s) 981
BseXI GCAGC 3 cut(s) 399, 875, 1001
Bsh1236I CGCG 3 cut(s) 29, 39, 1157
Bsh1285I CGRYCG 2 cut(s) 261, 984
BshFI GGCC 2 cut(s) 977, 983
BshTI ACCGGT 6 cut(s) 332, 494, 721, 757, 1058, 1123
BshVI ATCGAT 3 cut(s) 76, 90, 603
BsiEI CGRYCG 2 cut(s) 261, 984
BsiHKAI GWGCWC 1 cut(s) 634
BsiSI CCGG 9 cut(s) 333, 495, 701, 722, 737, 758, 974, 1059, 1124
BslFI GGGAC 3 cut(s) 306, 762, 905
BslI CCNNNNNNNGG 2 cut(s) 364, 494
BsmAI GTCTC 3 cut(s) 100, 517, 899
BsmBI CGTCTC 1 cut(s) 517
BsmFI GGGAC 3 cut(s) 306, 762, 905
BsnI GGCC 2 cut(s) 977, 983
Bso31I GGTCTC 1 cut(s) 899
Bsp119I TTCGAA 1 cut(s) 174
Bsp1286I GDGCHC 3 cut(s) 489, 634, 880
Bsp143I GATC 5 cut(s) 49, 77, 362, 573, 826
Bsp19I CCATGG 1 cut(s) 872
Bsp68I TCGCGA 1 cut(s) 29
BspACI CCGC 5 cut(s) 355, 861, 966, 1088, 1157
BspANI GGCC 2 cut(s) 977, 983
BspCNI CTCAG 3 cut(s) 151, 547, 907
BspDI ATCGAT 3 cut(s) 76, 90, 603
BspFNI CGCG 3 cut(s) 29, 39, 1157
BspLI GGNNCC 1 cut(s) 879
BspOI GCTAGC 1 cut(s) 318
BspPI GGATC 3 cut(s) 44, 370, 568
BspT104I TTCGAA 1 cut(s) 174
BspTNI GGTCTC 1 cut(s) 899
BsrFI RCCGGY 8 cut(s) 332, 494, 721, 736, 757, 973, 1058, 1123
BsrI ACTGG 2 cut(s) 635, 884
BssAI RCCGGY 8 cut(s) 332, 494, 721, 736, 757, 973, 1058, 1123
BssECI CCNNGG 6 cut(s) 288, 358, 780, 872, 978, 1211
BssMI GATC 5 cut(s) 49, 77, 362, 573, 826
BssNI GRCGYC 1 cut(s) 1152
BssT1I CCWWGG 4 cut(s) 358, 780, 872, 1211
Bst4CI ACNGT 7 cut(s) 16, 22, 289, 589, 910, 923, 1073
Bst6I CTCTTC 3 cut(s) 109, 897, 1046
BstACI GRCGYC 1 cut(s) 1152
BstBI TTCGAA 1 cut(s) 174
BstC8I GCNNGC 3 cut(s) 316, 820, 975
BstDEI CTNAG 6 cut(s) 159, 164, 236, 555, 915, 1193
BstDSI CCRYGG 2 cut(s) 288, 872
BstF5I GGATG 1 cut(s) 302
BstFNI CGCG 3 cut(s) 29, 39, 1157
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 5 cut(s) 52, 80, 365, 576, 829
BstMAI GTCTC 3 cut(s) 100, 517, 899
BstMBI GATC 5 cut(s) 49, 77, 362, 573, 826
BstMCI CGRYCG 2 cut(s) 261, 984
BstMWI GCNNNNNNNGC 6 cut(s) 324, 819, 974, 989, 1117, 1179
BstSFI CTRYAG 2 cut(s) 21, 1026
BstSLI GKGCMC 1 cut(s) 489
BstUI CGCG 3 cut(s) 29, 39, 1157
BstV1I GCAGC 3 cut(s) 399, 875, 1001
BstV2I GAAGAC 1 cut(s) 270
BstZI CGGCCG 1 cut(s) 981
Bsu15I ATCGAT 3 cut(s) 76, 90, 603
BsuRI GGCC 2 cut(s) 977, 983
BsuTUI ATCGAT 3 cut(s) 76, 90, 603
BtgI CCRYGG 2 cut(s) 288, 872
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 302
BtsI GCAGTG 2 cut(s) 489, 609
BtsIMutI CAGTG 4 cut(s) 18, 489, 585, 609
BtuMI TCGCGA 1 cut(s) 29
Cac8I GCNNGC 3 cut(s) 316, 820, 975
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 8 cut(s) 332, 494, 721, 736, 757, 973, 1058, 1123
Cfr13I GGNCC 4 cut(s) 242, 398, 457, 597
ClaI ATCGAT 3 cut(s) 76, 90, 603
CseI GACGC 2 cut(s) 426, 824
Csp6I GTAC 3 cut(s) 725, 887, 919
CspAI ACCGGT 6 cut(s) 332, 494, 721, 757, 1058, 1123
CviAII CATG 2 cut(s) 432, 873
CviQI GTAC 3 cut(s) 725, 887, 919
DdeI CTNAG 6 cut(s) 159, 164, 236, 555, 915, 1193
DpnI GATC 5 cut(s) 51, 79, 364, 575, 828
DpnII GATC 5 cut(s) 49, 77, 362, 573, 826
DrdI GACNNNNNNGTC 2 cut(s) 92, 509
DseDI GACNNNNNNGTC 2 cut(s) 92, 509
EaeI YGGCCR 1 cut(s) 981
EagI CGGCCG 1 cut(s) 981
Eam1104I CTCTTC 3 cut(s) 109, 897, 1046
EarI CTCTTC 3 cut(s) 109, 897, 1046
Ecl136II GAGCTC 1 cut(s) 632
EclXI CGGCCG 1 cut(s) 981
Eco130I CCWWGG 4 cut(s) 358, 780, 872, 1211
Eco24I GRGCYC 2 cut(s) 634, 880
Eco31I GGTCTC 1 cut(s) 899
Eco32I GATATC 1 cut(s) 546
Eco47I GGWCC 4 cut(s) 242, 398, 457, 597
Eco52I CGGCCG 1 cut(s) 981
Eco53kI GAGCTC 1 cut(s) 632
Eco57I CTGAAG 2 cut(s) 53, 330
EcoICRI GAGCTC 1 cut(s) 632
EcoRV GATATC 1 cut(s) 546
EcoT14I CCWWGG 4 cut(s) 358, 780, 872, 1211
EcoT38I GRGCYC 2 cut(s) 634, 880
ErhI CCWWGG 4 cut(s) 358, 780, 872, 1211
Esp3I CGTCTC 1 cut(s) 517
FaeI CATG 2 cut(s) 435, 876
FaiI YATR 7 cut(s) 433, 531, 714, 794, 874, 962, 1094
FalI AAGNNNNNCTT 4 cut(s) 238, 270, 934, 966
FaqI GGGAC 3 cut(s) 306, 762, 905
FatI CATG 2 cut(s) 431, 872
FauI CCCGC 1 cut(s) 1150
FblI GTMKAC 2 cut(s) 1025, 1207
Fnu4HI GCNGC 3 cut(s) 388, 864, 990
FokI GGATG 1 cut(s) 289
FriOI GRGCYC 2 cut(s) 634, 880
Fsp4HI GCNGC 3 cut(s) 388, 864, 990
FspBI CTAG 3 cut(s) 315, 438, 627
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 388, 864, 990
GsuI CTGGAG 1 cut(s) 618
HaeIII GGCC 2 cut(s) 977, 983
HapII CCGG 9 cut(s) 333, 495, 701, 722, 737, 758, 974, 1059, 1124
HgaI GACGC 2 cut(s) 426, 824
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 1152
Hin1II CATG 2 cut(s) 435, 876
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 1099
HindII GTYRAC 1 cut(s) 1099
HpaI GTTAAC 1 cut(s) 1099
HpaII CCGG 9 cut(s) 333, 495, 701, 722, 737, 758, 974, 1059, 1124
HphI GGTGA 1 cut(s) 543
Hpy166II GTNNAC 3 cut(s) 1026, 1099, 1208
Hpy188III TCNNGA 5 cut(s) 28, 47, 61, 514, 1002
Hpy8I GTNNAC 3 cut(s) 1026, 1099, 1208
Hpy99I CGWCG 3 cut(s) 818, 1154, 1157
HpyAV CCTTC 3 cut(s) 109, 588, 1078
HpyCH4III ACNGT 7 cut(s) 16, 22, 289, 589, 910, 923, 1073
HpyCH4IV ACGT 2 cut(s) 379, 1152
HpyCH4V TGCA 5 cut(s) 269, 614, 989, 1120, 1173
HpyF10VI GCNNNNNNNGC 6 cut(s) 324, 819, 974, 989, 1117, 1179
HpyF3I CTNAG 6 cut(s) 159, 164, 236, 555, 915, 1193
HpySE526I ACGT 2 cut(s) 379, 1152
Hsp92I GRCGYC 1 cut(s) 1152
Hsp92II CATG 2 cut(s) 435, 876
HspAI GCGC 1 cut(s) 5
KroI GCCGGC 1 cut(s) 973
KroNI GCCGGC 1 cut(s) 975
KspAI GTTAAC 1 cut(s) 1099
Kzo9I GATC 5 cut(s) 49, 77, 362, 573, 826
LmnI GCTCC 5 cut(s) 446, 637, 827, 883, 954
Lsp1109I GCAGC 3 cut(s) 399, 875, 1001
LweI GCATC 4 cut(s) 31, 209, 272, 311
MaeI CTAG 3 cut(s) 315, 438, 627
MaeII ACGT 2 cut(s) 379, 1152
MaeIII GTNAC 7 cut(s) 16, 185, 589, 923, 946, 1040, 1198
MalI GATC 5 cut(s) 51, 79, 364, 575, 828
MboI GATC 5 cut(s) 49, 77, 362, 573, 826
MhlI GDGCHC 3 cut(s) 489, 634, 880
MluCI AATT 4 cut(s) 643, 677, 729, 1005
MlyI GAGTC 4 cut(s) 586, 784, 795, 887
MnlI CCTC 4 cut(s) 122, 222, 316, 988
MroNI GCCGGC 1 cut(s) 973
MseI TTAA 5 cut(s) 569, 717, 753, 1098, 1128
MspI CCGG 9 cut(s) 333, 495, 701, 722, 737, 758, 974, 1059, 1124
MvnI CGCG 3 cut(s) 29, 39, 1157
MwoI GCNNNNNNNGC 6 cut(s) 324, 819, 974, 989, 1117, 1179
NaeI GCCGGC 1 cut(s) 975
NcoI CCATGG 1 cut(s) 872
NdeII GATC 5 cut(s) 49, 77, 362, 573, 826
NgoMIV GCCGGC 1 cut(s) 973
NheI GCTAGC 1 cut(s) 314
NlaIII CATG 2 cut(s) 435, 876
NlaIV GGNNCC 1 cut(s) 879
NmeAIII GCCGAG 2 cut(s) 959, 994
NmuCI GTSAC 3 cut(s) 16, 589, 1198
NruI TCGCGA 1 cut(s) 29
NspV TTCGAA 1 cut(s) 174
PcsI WCGNNNNNNNCGW 3 cut(s) 207, 822, 933
PdiI GCCGGC 1 cut(s) 975
PfeI GAWTC 9 cut(s) 64, 73, 232, 464, 477, 507, 697, 709, 766
PflFI GACNNNGTC 2 cut(s) 595, 910
PinAI ACCGGT 6 cut(s) 332, 494, 721, 757, 1058, 1123
PkrI GCNGC 3 cut(s) 389, 865, 991
PleI GAGTC 4 cut(s) 586, 783, 794, 887
PpsI GAGTC 4 cut(s) 586, 783, 794, 887
Psp124BI GAGCTC 1 cut(s) 634
PspN4I GGNNCC 1 cut(s) 879
PspPI GGNCC 4 cut(s) 242, 398, 457, 597
PsyI GACNNNGTC 2 cut(s) 595, 910
RruI TCGCGA 1 cut(s) 29
RsaI GTAC 3 cut(s) 726, 888, 920
RsaNI GTAC 3 cut(s) 725, 887, 919
SacI GAGCTC 1 cut(s) 634
SaqAI TTAA 5 cut(s) 569, 717, 753, 1098, 1128
SatI GCNGC 3 cut(s) 388, 864, 990
Sau3AI GATC 5 cut(s) 49, 77, 362, 573, 826
Sau96I GGNCC 4 cut(s) 242, 398, 457, 597
SchI GAGTC 4 cut(s) 586, 784, 795, 887
SduI GDGCHC 3 cut(s) 489, 634, 880
SfaNI GCATC 4 cut(s) 31, 209, 272, 311
SfcI CTRYAG 2 cut(s) 21, 1026
SfuI TTCGAA 1 cut(s) 174
SinI GGWCC 4 cut(s) 242, 398, 457, 597
SmlI CTYRAG 1 cut(s) 1000
SmoI CTYRAG 1 cut(s) 1000
Sse9I AATT 4 cut(s) 643, 677, 729, 1005
SsiI CCGC 5 cut(s) 355, 861, 966, 1088, 1157
SspMI CTAG 3 cut(s) 315, 438, 627
SstI GAGCTC 1 cut(s) 634
StyI CCWWGG 4 cut(s) 358, 780, 872, 1211
TaaI ACNGT 7 cut(s) 16, 22, 289, 589, 910, 923, 1073
TaiI ACGT 2 cut(s) 382, 1155
TaqI TCGA 8 cut(s) 76, 90, 174, 181, 217, 515, 603, 896
TaqII GACCGA 3 cut(s) 247, 519, 585
TasI AATT 4 cut(s) 643, 677, 729, 1005
TfiI GAWTC 9 cut(s) 64, 73, 232, 464, 477, 507, 697, 709, 766
Tru1I TTAA 5 cut(s) 569, 717, 753, 1098, 1128
Tru9I TTAA 5 cut(s) 569, 717, 753, 1098, 1128
TscAI CASTG 4 cut(s) 25, 489, 592, 616
TseFI GTSAC 3 cut(s) 16, 589, 1198
TseI GCWGC 3 cut(s) 387, 863, 989
Tsp45I GTSAC 3 cut(s) 16, 589, 1198
TspDTI ATGAA 2 cut(s) 165, 518
TspGWI ACGGA 2 cut(s) 216, 439
TspRI CASTG 4 cut(s) 25, 489, 592, 616
Tth111I GACNNNGTC 2 cut(s) 595, 910
VpaK11BI GGWCC 4 cut(s) 242, 398, 457, 597
XmiI GTMKAC 2 cut(s) 1025, 1207
XspI CTAG 3 cut(s) 315, 438, 627
ZraI GACGTC 1 cut(s) 1153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.