Prupe.7G023100_v2.0.a1

phytochrome kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014149
Physical Location & Seq
Forward (+)
3597371 .. 3599125
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G023100.1

Sequence Viewer

Length: 1251 bp
ATGACGTCATTGCGTAGTCGCAGTGCTGCTAATCATAATGCTGCTCCTCAACCTCATCACGACAATGTGAAGGAGGAGAAGAAGAAATTGGGTGTACGATGGTACAGTATTTTCCCAATGAGAAGATCAAGGAGATGCCCCTGCTTCGGCAAGAAATCGGTTCGAGTTGTTGATCCCGAGACTAAATCATCAATTCCAAACATGTCATCATCAGTCAGTCGAGCCGGAGTCGGAGTTGGAGTTGGAGTCGGAGAGAGTATTACCATTAATAATGGCAATATGGCAACCACCAATGTCGTTACAGCCGGCGATTTGAACTCTTCCTTAATCGTGCCGCCGGTCGACAACCGTCGTCATCTAGTGTGGCCCGGTCCAGAACGGCGTCGTCCGGAGTGGGATGAGCACCAACAGATCACTACTACTAGTGGTGGGTTTAGCTTTCCTATATTGAAAGTGAATGGGAATGGGAGCACATCCACGTCATCGCCAGTTATCTCAACTCTAAACCCTAAATTCCGAAACCCACCAAATCCTACCTTCACATTCCCTTCTTCAACTCCCAAACCCCCCATCAACATTCTTAATAATAATATTAAAAATCATCATCATAATAATATTGATGATGACGTGGCAAGCGATGCTAGTTCTGATTTGTTCGAGATCGAGAGCTTCTCTGCTACTACTTATGCCCAAACACAAAATTACTCTCGCACCCGCCGGGAGTCGTTGGATGACGAGGATGCAATCGGCCTCGGTCGACGCCGTTTGGGTGCCAATATCAACTCGGGATCCGACGGCCACGATTCAATCACGTCAACAGATCAATACTGCTACGAGCCGAGCGAGGCCAGCATCGACTGGAGCGTCACCACGGCTGAGGGCTTCGACCGATCATCCGATCATCATCATCATCATCATCAAGATCATGATCGTGATGTCGCCGACGTGGCACAAATTATGAAAGTGAGCAGCAGCAAAGGGAACAATATTGGGTTGTTGAGCTGTCGACGTGAGAAGGCGGTTAGTGTGGGGCCTAACCCAGTGAGATTGGCCATCATGCCTCCTGCTGCAGCACCTGATCAGAATCGACATACGGGTGGAGGAGCAGGACCCACCAAAACTCTATCACCATCGTTAAATTCCAGGATGAGGCATGTGGGGAGTAGGCCAGGCTTAGCCAACAGTAACAAGCCACCGCTTGCACCTCGGATGTCTGTTCCTTTCGCAACATCCCCACAGCCAGTCATCTGA

Protein Analysis

417

Amino Acids

45.21

Weight (kDa)

9.39

Isoelectric Point (pI)

65.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014149)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04190
fragaria_vesca FvH4_4g10470
malus_domestica MD12G1110900.v1.1
prunus_persica Prupe.7G023100_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0495011
rosa_laevigata RLG00000022656
rosa_multiflora Rmu_co8188214.1_g000001 Rmu_ssc0000058.1_g000001
rosa_roxburghii Rroxscaffold_4G00319360 Rroxscaffold_6G00390850
rosa_rugosa Rorug03G0269300
rosa_samantha Rh3BG353200 Rh3CG313700 Rh3CG350100 Rh3CG350300 Rh3DG352600
rosa_wichuraiana Rw3G027740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 863
AatII GACGTC 1 cut(s) 8
AccB1I GGYRCC 1 cut(s) 770
AccI GTMKAC 3 cut(s) 342, 757, 1006
AccIII TCCGGA 1 cut(s) 388
AciI CCGC 4 cut(s) 335, 715, 1019, 1196
AclWI GGATC 3 cut(s) 167, 783, 796
AcoI YGGCCR 2 cut(s) 796, 1050
AcsI RAATTY 2 cut(s) 512, 1138
AcyI GRCGYC 3 cut(s) 5, 382, 760
AfaI GTAC 2 cut(s) 96, 104
AfiI CCNNNNNNNGG 2 cut(s) 146, 1149
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 4 cut(s) 316, 451, 555, 807
AhlI ACTAGT 1 cut(s) 422
AjiI CACGTC 5 cut(s) 480, 628, 813, 946, 1010
AjnI CCWGG 2 cut(s) 1142, 1168
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 3 cut(s) 438, 669, 1002
AluI AGCT 3 cut(s) 438, 669, 1002
Alw21I GWGCWC 2 cut(s) 405, 473
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 3 cut(s) 167, 783, 796
AlwNI CAGNNNCTG 1 cut(s) 1076
Ama87I CYCGRG 2 cut(s) 176, 784
Aor13HI TCCGGA 1 cut(s) 388
AoxI GGCC 7 cut(s) 365, 748, 796, 846, 1031, 1050, 1166
ApeKI GCWGC 6 cut(s) 26, 41, 969, 972, 1067, 1070
ApoI RAATTY 2 cut(s) 512, 1138
AseI ATTAAT 1 cut(s) 267
AspS9I GGNCC 4 cut(s) 366, 371, 1031, 1109
AsuC2I CCSGG 2 cut(s) 369, 719
AsuHPI GGTGA 2 cut(s) 859, 1119
AvaI CYCGRG 2 cut(s) 176, 784
AvaII GGWCC 2 cut(s) 371, 1109
BalI TGGCCA 1 cut(s) 1052
BamHI GGATCC 1 cut(s) 788
BanI GGYRCC 1 cut(s) 770
Bbv12I GWGCWC 2 cut(s) 405, 473
BbvCI CCTCAGC 1 cut(s) 876
BbvI GCAGC 6 cut(s) 13, 28, 981, 984, 1054, 1082
BccI CCATC 4 cut(s) 93, 578, 1061, 1138
BceAI ACGGC 4 cut(s) 395, 747, 811, 888
BciT130I CCWGG 2 cut(s) 1144, 1170
BclI TGATCA 1 cut(s) 1078
BcnI CCSGG 2 cut(s) 369, 719
BcoDI GTCTC 1 cut(s) 173
BcuI ACTAGT 1 cut(s) 422
BfaI CTAG 3 cut(s) 359, 423, 642
BfmI CTRYAG 1 cut(s) 1068
BglI GCCNNNNNGGC 1 cut(s) 947
BisI GCNGC 7 cut(s) 27, 42, 335, 970, 973, 1068, 1071
BlpI GCTNAGC 1 cut(s) 1174
BlsI GCNGC 7 cut(s) 28, 43, 336, 971, 974, 1069, 1072
Bme1390I CCNGG 4 cut(s) 369, 719, 1144, 1170
Bme18I GGWCC 2 cut(s) 371, 1109
BmeT110I CYCGRG 2 cut(s) 176, 784
BmgBI CACGTC 5 cut(s) 480, 628, 813, 946, 1010
BmgT120I GGNCC 4 cut(s) 366, 371, 1031, 1109
BmiI GGNNCC 4 cut(s) 772, 790, 1032, 1111
BmrFI CCNGG 4 cut(s) 369, 719, 1144, 1170
BmrI ACTGGG 1 cut(s) 1034
BmsI GCATC 4 cut(s) 125, 628, 730, 861
BmuI ACTGGG 1 cut(s) 1034
BoxI GACNNNNGTC 1 cut(s) 348
BplI GAGNNNNNCTC 2 cut(s) 656, 688
BpmI CTGGAG 1 cut(s) 880
Bpu10I CCTNAGC 1 cut(s) 876
Bpu1102I GCTNAGC 1 cut(s) 1174
BpuMI CCSGG 2 cut(s) 369, 719
BsaBI GATNNNNATC 3 cut(s) 903, 927, 1083
BsaHI GRCGYC 3 cut(s) 5, 382, 760
BsaJI CCNNGG 3 cut(s) 751, 870, 1205
BsaWI WCCGGW 1 cut(s) 388
BsaXI ACNNNNNCTCC 6 cut(s) 219, 225, 231, 249, 255, 261
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 1149
Bse118I RCCGGY 2 cut(s) 305, 337
Bse1I ACTGG 4 cut(s) 488, 863, 1040, 1241
Bse3DI GCAATG 1 cut(s) 8
Bse8I GATNNNNATC 3 cut(s) 903, 927, 1083
BseAI TCCGGA 1 cut(s) 388
BseBI CCWGG 2 cut(s) 1144, 1170
BseDI CCNNGG 3 cut(s) 751, 870, 1205
BseGI GGATG 8 cut(s) 403, 473, 736, 745, 893, 1152, 1215, 1229
BseJI GATNNNNATC 3 cut(s) 903, 927, 1083
BseLI CCNNNNNNNGG 2 cut(s) 146, 1149
BseMI GCAATG 1 cut(s) 8
BseMII CTCAG 1 cut(s) 867
BseNI ACTGG 4 cut(s) 488, 863, 1040, 1241
BseRI GAGGAG 3 cut(s) 36, 89, 1116
BseXI GCAGC 6 cut(s) 13, 28, 981, 984, 1054, 1082
Bsh1285I CGRYCG 3 cut(s) 342, 757, 889
BshFI GGCC 7 cut(s) 367, 750, 798, 848, 1033, 1052, 1168
BshNI GGYRCC 1 cut(s) 770
BsiEI CGRYCG 3 cut(s) 342, 757, 889
BsiHKAI GWGCWC 2 cut(s) 405, 473
BsiHKCI CYCGRG 2 cut(s) 176, 784
BsiSI CCGG 6 cut(s) 225, 306, 338, 369, 389, 718
BslI CCNNNNNNNGG 2 cut(s) 146, 1149
BsmAI GTCTC 1 cut(s) 173
BsnI GGCC 7 cut(s) 367, 750, 798, 848, 1033, 1052, 1168
BsoBI CYCGRG 2 cut(s) 176, 784
Bsp1286I GDGCHC 2 cut(s) 405, 473
Bsp13I TCCGGA 1 cut(s) 388
Bsp1720I GCTNAGC 1 cut(s) 1174
BspACI CCGC 4 cut(s) 335, 715, 1019, 1196
BspANI GGCC 7 cut(s) 367, 750, 798, 848, 1033, 1052, 1168
BspCNI CTCAG 1 cut(s) 868
BspEI TCCGGA 1 cut(s) 388
BspHI TCATGA 1 cut(s) 925
BspLI GGNNCC 4 cut(s) 772, 790, 1032, 1111
BspMAI CTGCAG 1 cut(s) 1072
BspPI GGATC 3 cut(s) 167, 783, 796
BspT107I GGYRCC 1 cut(s) 770
BsrDI GCAATG 1 cut(s) 8
BsrFI RCCGGY 2 cut(s) 305, 337
BsrI ACTGG 4 cut(s) 488, 863, 1040, 1241
BssAI RCCGGY 2 cut(s) 305, 337
BssECI CCNNGG 3 cut(s) 751, 870, 1205
BssNI GRCGYC 3 cut(s) 5, 382, 760
Bst2UI CCWGG 2 cut(s) 1144, 1170
Bst4CI ACNGT 3 cut(s) 107, 350, 1184
Bst6I CTCTTC 1 cut(s) 325
BstACI GRCGYC 3 cut(s) 5, 382, 760
BstAPI GCANNNNNTGC 1 cut(s) 638
BstC8I GCNNGC 4 cut(s) 307, 634, 850, 1200
BstDEI CTNAG 2 cut(s) 876, 1174
BstDSI CCRYGG 1 cut(s) 870
BstF5I GGATG 8 cut(s) 403, 473, 736, 745, 893, 1152, 1215, 1229
BstMAI GTCTC 1 cut(s) 173
BstMCI CGRYCG 3 cut(s) 342, 757, 889
BstMWI GCNNNNNNNGC 3 cut(s) 638, 849, 947
BstNI CCWGG 2 cut(s) 1144, 1170
BstNSI RCATGY 2 cut(s) 205, 1157
BstPAI GACNNNNGTC 1 cut(s) 348
BstSCI CCNGG 4 cut(s) 367, 717, 1142, 1168
BstSFI CTRYAG 1 cut(s) 1068
BstV1I GCAGC 6 cut(s) 13, 28, 981, 984, 1054, 1082
BstX2I RGATCY 1 cut(s) 788
BstYI RGATCY 1 cut(s) 788
BsuRI GGCC 7 cut(s) 367, 750, 798, 848, 1033, 1052, 1168
BtgI CCRYGG 1 cut(s) 870
BtgZI GCGATG 2 cut(s) 468, 651
BtrI CACGTC 5 cut(s) 480, 628, 813, 946, 1010
BtsCI GGATG 8 cut(s) 403, 473, 736, 745, 893, 1152, 1215, 1229
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 2 cut(s) 28, 1047
Cac8I GCNNGC 4 cut(s) 307, 634, 850, 1200
CaiI CAGNNNCTG 1 cut(s) 1076
CciI TCATGA 1 cut(s) 925
Cfr10I RCCGGY 2 cut(s) 305, 337
Cfr13I GGNCC 4 cut(s) 366, 371, 1031, 1109
CseI GACGC 3 cut(s) 371, 768, 853
Csp6I GTAC 2 cut(s) 95, 103
CviAII CATG 4 cut(s) 202, 926, 1057, 1154
CviQI GTAC 2 cut(s) 95, 103
DdeI CTNAG 2 cut(s) 876, 1174
DrdI GACNNNNNNGTC 1 cut(s) 863
DseDI GACNNNNNNGTC 1 cut(s) 863
EaeI YGGCCR 2 cut(s) 796, 1050
Eam1104I CTCTTC 1 cut(s) 325
EarI CTCTTC 1 cut(s) 325
Eco47I GGWCC 2 cut(s) 371, 1109
Eco88I CYCGRG 2 cut(s) 176, 784
EcoO109I RGGNCCY 2 cut(s) 1031, 1109
EcoRII CCWGG 2 cut(s) 1142, 1168
FaeI CATG 4 cut(s) 205, 929, 1060, 1157
FatI CATG 4 cut(s) 201, 925, 1056, 1153
FauI CCCGC 1 cut(s) 722
FbaI TGATCA 1 cut(s) 1078
FblI GTMKAC 3 cut(s) 342, 757, 1006
Fnu4HI GCNGC 7 cut(s) 27, 42, 335, 970, 973, 1068, 1071
FokI GGATG 8 cut(s) 410, 460, 743, 752, 880, 1159, 1216, 1222
Fsp4HI GCNGC 7 cut(s) 27, 42, 335, 970, 973, 1068, 1071
FspBI CTAG 3 cut(s) 359, 423, 642
GluI GCNGC 7 cut(s) 27, 42, 335, 970, 973, 1068, 1071
GsuI CTGGAG 1 cut(s) 880
HaeIII GGCC 7 cut(s) 367, 750, 798, 848, 1033, 1052, 1168
HapII CCGG 6 cut(s) 225, 306, 338, 369, 389, 718
HgaI GACGC 3 cut(s) 371, 768, 853
Hin1I GRCGYC 3 cut(s) 5, 382, 760
Hin1II CATG 4 cut(s) 205, 929, 1060, 1157
HincII GTYRAC 4 cut(s) 343, 758, 816, 1007
HindII GTYRAC 4 cut(s) 343, 758, 816, 1007
HinfI GANTC 5 cut(s) 228, 246, 722, 803, 1084
HpaII CCGG 6 cut(s) 225, 306, 338, 369, 389, 718
HphI GGTGA 2 cut(s) 859, 1119
Hpy166II GTNNAC 5 cut(s) 95, 343, 758, 816, 1007
Hpy188I TCNGA 9 cut(s) 233, 251, 518, 649, 793, 898, 1083, 1209, 1250
Hpy8I GTNNAC 5 cut(s) 95, 343, 758, 816, 1007
Hpy99I CGWCG 6 cut(s) 354, 387, 762, 797, 947, 1011
HpyAV CCTTC 4 cut(s) 64, 547, 558, 1009
HpyCH4III ACNGT 3 cut(s) 107, 350, 1184
HpyCH4IV ACGT 6 cut(s) 5, 479, 627, 812, 945, 1009
HpyCH4V TGCA 3 cut(s) 743, 1070, 1202
HpyF10VI GCNNNNNNNGC 3 cut(s) 638, 849, 947
HpyF3I CTNAG 2 cut(s) 876, 1174
HpySE526I ACGT 6 cut(s) 5, 479, 627, 812, 945, 1009
Hsp92I GRCGYC 3 cut(s) 5, 382, 760
Hsp92II CATG 4 cut(s) 205, 929, 1060, 1157
Kpn2I TCCGGA 1 cut(s) 388
KroI GCCGGC 1 cut(s) 305
KroNI GCCGGC 1 cut(s) 307
Ksp22I TGATCA 1 cut(s) 1078
LmnI GCTCC 4 cut(s) 49, 468, 861, 1103
Lsp1109I GCAGC 6 cut(s) 13, 28, 981, 984, 1054, 1082
LweI GCATC 4 cut(s) 125, 628, 730, 861
MaeI CTAG 3 cut(s) 359, 423, 642
MaeII ACGT 6 cut(s) 5, 479, 627, 812, 945, 1009
MaeIII GTNAC 3 cut(s) 298, 865, 1184
MboII GAAGA 5 cut(s) 91, 94, 135, 312, 543
MflI RGATCY 1 cut(s) 788
MhlI GDGCHC 2 cut(s) 405, 473
MlsI TGGCCA 1 cut(s) 1052
MluCI AATT 6 cut(s) 86, 192, 512, 700, 954, 1138
MluNI TGGCCA 1 cut(s) 1052
MlyI GAGTC 3 cut(s) 237, 255, 731
MmeI TCCRAC 6 cut(s) 211, 217, 223, 229, 708, 816
Mox20I TGGCCA 1 cut(s) 1052
MroI TCCGGA 1 cut(s) 388
MroNI GCCGGC 1 cut(s) 305
MscI TGGCCA 1 cut(s) 1052
MseI TTAA 5 cut(s) 267, 326, 582, 594, 1136
MslI CAYNNNNRTG 3 cut(s) 63, 930, 1095
Msp20I TGGCCA 1 cut(s) 1052
MspI CCGG 6 cut(s) 225, 306, 338, 369, 389, 718
MspR9I CCNGG 4 cut(s) 369, 719, 1144, 1170
MvaI CCWGG 2 cut(s) 1144, 1170
MwoI GCNNNNNNNGC 3 cut(s) 638, 849, 947
NaeI GCCGGC 1 cut(s) 307
NciI CCSGG 2 cut(s) 369, 719
NgoMIV GCCGGC 1 cut(s) 305
NlaIII CATG 4 cut(s) 205, 929, 1060, 1157
NlaIV GGNNCC 4 cut(s) 772, 790, 1032, 1111
NmeAIII GCCGAG 1 cut(s) 864
NmuCI GTSAC 1 cut(s) 865
NspI RCATGY 2 cut(s) 205, 1157
PagI TCATGA 1 cut(s) 925
PciI ACATGT 1 cut(s) 201
PcsI WCGNNNNNNNCGW 3 cut(s) 633, 840, 861
PdiI GCCGGC 1 cut(s) 307
PfeI GAWTC 2 cut(s) 803, 1084
PfoI TCCNGGA 1 cut(s) 1142
PkrI GCNGC 7 cut(s) 28, 43, 336, 971, 974, 1069, 1072
PleI GAGTC 3 cut(s) 236, 254, 730
PpsI GAGTC 3 cut(s) 236, 254, 730
PpuMI RGGWCCY 1 cut(s) 1109
PscI ACATGT 1 cut(s) 201
PshAI GACNNNNGTC 1 cut(s) 348
PshBI ATTAAT 1 cut(s) 267
Psp5II RGGWCCY 1 cut(s) 1109
Psp6I CCWGG 2 cut(s) 1142, 1168
PspGI CCWGG 2 cut(s) 1142, 1168
PspN4I GGNNCC 4 cut(s) 772, 790, 1032, 1111
PspPI GGNCC 4 cut(s) 366, 371, 1031, 1109
PspPPI RGGWCCY 1 cut(s) 1109
PstI CTGCAG 1 cut(s) 1072
PstNI CAGNNNCTG 1 cut(s) 1076
PsuI RGATCY 1 cut(s) 788
RsaI GTAC 2 cut(s) 96, 104
RsaNI GTAC 2 cut(s) 95, 103
RseI CAYNNNNRTG 3 cut(s) 63, 930, 1095
SalI GTCGAC 3 cut(s) 341, 756, 1005
SaqAI TTAA 5 cut(s) 267, 326, 582, 594, 1136
SatI GCNGC 7 cut(s) 27, 42, 335, 970, 973, 1068, 1071
Sau96I GGNCC 4 cut(s) 366, 371, 1031, 1109
SchI GAGTC 3 cut(s) 237, 255, 731
ScrFI CCNGG 4 cut(s) 369, 719, 1144, 1170
SduI GDGCHC 2 cut(s) 405, 473
SfaNI GCATC 4 cut(s) 125, 628, 730, 861
SfcI CTRYAG 1 cut(s) 1068
SinI GGWCC 2 cut(s) 371, 1109
SmiMI CAYNNNNRTG 3 cut(s) 63, 930, 1095
SpeI ACTAGT 1 cut(s) 422
Sse9I AATT 6 cut(s) 86, 192, 512, 700, 954, 1138
SsiI CCGC 4 cut(s) 335, 715, 1019, 1196
SspI AATATT 3 cut(s) 592, 616, 988
SspMI CTAG 3 cut(s) 359, 423, 642
StyD4I CCNGG 4 cut(s) 367, 717, 1142, 1168
TaaI ACNGT 3 cut(s) 107, 350, 1184
TaiI ACGT 6 cut(s) 8, 482, 630, 815, 948, 1012
TaqII GACCGA 2 cut(s) 743, 903
TasI AATT 6 cut(s) 86, 192, 512, 700, 954, 1138
TauI GCSGC 1 cut(s) 337
TfiI GAWTC 2 cut(s) 803, 1084
Tru1I TTAA 5 cut(s) 267, 326, 582, 594, 1136
Tru9I TTAA 5 cut(s) 267, 326, 582, 594, 1136
TscAI CASTG 2 cut(s) 28, 1047
TseFI GTSAC 1 cut(s) 865
TseI GCWGC 6 cut(s) 26, 41, 969, 972, 1067, 1070
Tsp45I GTSAC 1 cut(s) 865
TspDTI ATGAA 1 cut(s) 974
TspRI CASTG 2 cut(s) 28, 1047
VpaK11BI GGWCC 2 cut(s) 371, 1109
VspI ATTAAT 1 cut(s) 267
XapI RAATTY 2 cut(s) 512, 1138
XceI RCATGY 2 cut(s) 205, 1157
XmiI GTMKAC 3 cut(s) 342, 757, 1006
XspI CTAG 3 cut(s) 359, 423, 642
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.