Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8188214.1

Orthogroup ID

OG0014149

Physical Location & Seq

Genomic Coordinates Forward (+)

94 .. 695

Gene Structure 602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8188214.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 602 bp

atgtcatcacagcaaccggctaagacctcatcatcacattacacagcagcagcagcagccgccccgaggactgtatccttggatctcagaaatcaaacacccaagtcaaagtcagtggtggcagcgagtggcgaccagcatttgatgtgggatatagaacatcgtcgtcgttgggaggggcagatgactgtcaagataccatcagctggaaacccccataatcgattattcagacctcttcctgctgctgcggagatgcaagcacaacatactaacgcctttagctttcccatattgaaactgaatgggaggggcacatcgtggtcctcgtcgtcaccaatgttgaagttgcagcagcagcctgctactgtaaaacaagaaccaactctggcacgggaaggtctggaacccttgactactagtactgatgaacaatcatccacaactatttcaatccacaagcctactactactagtactgatcactcgagtactggtttcacattccctgcaagccccaaatcccgagtaattgtaagcaatgatgacgatttgggaagcgatgcaagctctgatttattcgagattgaaagcttctctac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009639 GO:0009987 GO:0010017 GO:0023052 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

21.79

Weight (kDa)

7.07

Isoelectric Point (pI)

63.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04190
fragaria_vesca	FvH4_4g10470
malus_domestica	MD12G1110900.v1.1
prunus_persica	Prupe.7G023100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0495011
rosa_laevigata	RLG00000022656
rosa_multiflora	Rmu_co8188214.1_g000001 Rmu_ssc0000058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319360 Rroxscaffold_6G00390850
rosa_rugosa	Rorug03G0269300
rosa_samantha	Rh3BG353200 Rh3CG313700 Rh3CG350100 Rh3CG350300 Rh3DG352600
rosa_wichuraiana	Rw3G027740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	206
AciI	CCGC	2 cut(s)	60, 251
AclWI	GGATC	1 cut(s)	90
AdeI	CACNNNGTG	1 cut(s)	321
AfaI	GTAC	3 cut(s)	424, 478, 493
AfiI	CCNNNNNNNGG	2 cut(s)	66, 206
AgsI	TTSAA	4 cut(s)	298, 346, 453, 590
AhlI	ACTAGT	2 cut(s)	419, 473
AluBI	AGCT	4 cut(s)	206, 285, 570, 594
AluI	AGCT	4 cut(s)	206, 285, 570, 594
AlwI	GGATC	1 cut(s)	90
Ama87I	CYCGRG	3 cut(s)	64, 487, 525
AspS9I	GGNCC	1 cut(s)	324
AsuHPI	GGTGA	1 cut(s)	327
AvaI	CYCGRG	3 cut(s)	64, 487, 525
AvaII	GGWCC	1 cut(s)	324
BaeGI	GKGCMC	1 cut(s)	317
BccI	CCATC	1 cut(s)	208
BciVI	GTATCC	1 cut(s)	85
BclI	TGATCA	1 cut(s)	481
BcuI	ACTAGT	2 cut(s)	419, 473
BfaI	CTAG	2 cut(s)	420, 474
BfuI	GTATCC	1 cut(s)	85
BmcAI	AGTACT	3 cut(s)	424, 478, 493
Bme18I	GGWCC	1 cut(s)	324
BmeT110I	CYCGRG	3 cut(s)	64, 487, 525
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	1 cut(s)	408
BmsI	GCATC	2 cut(s)	246, 553
Bsa29I	ATCGAT	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	65, 78
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 206
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	499
Bse3DI	GCAATG	1 cut(s)	547
BseCI	ATCGAT	1 cut(s)	223
BseDI	CCNNGG	2 cut(s)	65, 78
BseGI	GGATG	1 cut(s)	437
BseLI	CCNNNNNNNGG	2 cut(s)	66, 206
BseMI	GCAATG	1 cut(s)	547
BseMII	CTCAG	1 cut(s)	100
BseNI	ACTGG	1 cut(s)	499
BseSI	GKGCMC	1 cut(s)	317
BshVI	ATCGAT	1 cut(s)	223
BsiHKCI	CYCGRG	3 cut(s)	64, 487, 525
BsiSI	CCGG	1 cut(s)	17
BslI	CCNNNNNNNGG	2 cut(s)	66, 206
BsoBI	CYCGRG	3 cut(s)	64, 487, 525
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	2 cut(s)	82, 481
BspACI	CCGC	2 cut(s)	60, 251
BspCNI	CTCAG	1 cut(s)	99
BspDI	ATCGAT	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	408
BspPI	GGATC	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	547
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	499
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	2 cut(s)	65, 78
BssMI	GATC	2 cut(s)	82, 481
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	3 cut(s)	73, 190, 370
Bst6I	CTCTTC	1 cut(s)	243
BstC8I	GCNNGC	4 cut(s)	261, 363, 514, 568
BstDEI	CTNAG	2 cut(s)	21, 86
BstF5I	GGATG	1 cut(s)	437
BstKTI	GATC	2 cut(s)	85, 484
BstMBI	GATC	2 cut(s)	82, 481
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 56, 59, 358, 567
BstSLI	GKGCMC	1 cut(s)	317
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
Bsu15I	ATCGAT	1 cut(s)	223
BsuI	GTATCC	1 cut(s)	85
BsuTUI	ATCGAT	1 cut(s)	223
BtgZI	GCGATG	1 cut(s)	576
BtsCI	GGATG	1 cut(s)	437
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	4 cut(s)	261, 363, 514, 568
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	324
ClaI	ATCGAT	1 cut(s)	223
Csp6I	GTAC	3 cut(s)	423, 477, 492
CspCI	CAANNNNNGTGG	2 cut(s)	96, 131
CviJI	RGCY	9 cut(s)	20, 59, 206, 285, 361, 463, 516, 570, 594
CviKI_1	RGCY	9 cut(s)	20, 59, 206, 285, 361, 463, 516, 570, 594
CviQI	GTAC	3 cut(s)	423, 477, 492
DdeI	CTNAG	2 cut(s)	21, 86
DpnI	GATC	2 cut(s)	84, 483
DpnII	GATC	2 cut(s)	82, 481
DraIII	CACNNNGTG	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	324
Eco88I	CYCGRG	3 cut(s)	64, 487, 525
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaiI	YATR	4 cut(s)	155, 219, 270, 293
FbaI	TGATCA	1 cut(s)	481
FokI	GGATG	1 cut(s)	424
FspBI	CTAG	2 cut(s)	420, 474
HapII	CCGG	1 cut(s)	17
HindIII	AAGCTT	1 cut(s)	592
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	1 cut(s)	327
Hpy188I	TCNGA	3 cut(s)	89, 233, 574
Hpy188III	TCNNGA	4 cut(s)	193, 404, 525, 583
Hpy99I	CGWCG	3 cut(s)	168, 171, 334
HpyAV	CCTTC	1 cut(s)	392
HpyCH4III	ACNGT	3 cut(s)	73, 190, 370
HpyCH4V	TGCA	4 cut(s)	259, 352, 512, 566
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 56, 59, 358, 567
HpyF3I	CTNAG	2 cut(s)	21, 86
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	2 cut(s)	82, 481
LpnPI	CCDG	9 cut(s)	30, 149, 192, 255, 374, 375, 389, 480, 522
LweI	GCATC	2 cut(s)	246, 553
MaeI	CTAG	2 cut(s)	420, 474
MaeIII	GTNAC	1 cut(s)	333
MalI	GATC	2 cut(s)	84, 483
MboI	GATC	2 cut(s)	82, 481
MboII	GAAGA	1 cut(s)	230
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	1 cut(s)	531
MnlI	CCTC	6 cut(s)	37, 60, 169, 246, 303, 337
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	5 cut(s)	53, 56, 59, 358, 567
NdeII	GATC	2 cut(s)	82, 481
NlaIV	GGNNCC	1 cut(s)	408
NmuCI	GTSAC	1 cut(s)	333
PaeR7I	CTCGAG	1 cut(s)	487
PcsI	WCGNNNNNNNCGW	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	408
PspPI	GGNCC	1 cut(s)	324
PspXI	VCTCGAGB	1 cut(s)	487
PsuI	RGATCY	1 cut(s)	82
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	3 cut(s)	424, 478, 493
RsaNI	GTAC	3 cut(s)	423, 477, 492
Sau3AI	GATC	2 cut(s)	82, 481
Sau96I	GGNCC	1 cut(s)	324
ScaI	AGTACT	3 cut(s)	424, 478, 493
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	7 cut(s)	29, 208, 238, 287, 403, 572, 596
SfaNI	GCATC	2 cut(s)	246, 553
Sfr274I	CTCGAG	1 cut(s)	487
SinI	GGWCC	1 cut(s)	324
SlaI	CTCGAG	1 cut(s)	487
SmlI	CTYRAG	1 cut(s)	487
SmoI	CTYRAG	1 cut(s)	487
SpeI	ACTAGT	2 cut(s)	419, 473
Sse9I	AATT	1 cut(s)	531
SsiI	CCGC	2 cut(s)	60, 251
SspMI	CTAG	2 cut(s)	420, 474
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	3 cut(s)	73, 190, 370
TaqI	TCGA	3 cut(s)	223, 488, 582
TasI	AATT	1 cut(s)	531
TatI	WGTACW	3 cut(s)	422, 476, 491
TauI	GCSGC	1 cut(s)	62
TscAI	CASTG	1 cut(s)	120
TseFI	GTSAC	1 cut(s)	333
Tsp45I	GTSAC	1 cut(s)	333
TspDTI	ATGAA	1 cut(s)	444
TspRI	CASTG	1 cut(s)	120
Van91I	CCANNNNNTGG	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	324
XhoI	CTCGAG	1 cut(s)	487
XspI	CTAG	2 cut(s)	420, 474
ZrmI	AGTACT	3 cut(s)	424, 478, 493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.