FvH4_4g10470

phytochrome kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014149
Physical Location & Seq
Reverse (-)
14201346 .. 14203121
1776 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10470.t1

Sequence Viewer

Length: 1776 bp
ATGGAGAGATCAAAAGGTGTCAGTAGTGGCAGCAACAGCAAAATTGGAGACAGAAATGCATCATTCTCTGCGTACTGCATACCAGATCACGAAAAGGATGGCGTTGCTGCGGGTGATGATACCACTGAAATAAGCATTTTTGAGGCCCAAAAGTACTTCAACGAAACCATCACTGATGACCAAAAGGCGAGCAGGAACAACAACAAAAATGCTGCTGTTAATGTTAATAACAGAGCAATATCTCCTCCTTTGGCCAACAATGTCATCATCGACAACATGGAGCAGCATGCTAGATTCTCATGGGCTTCCTCATCCGTTCATGATGAGTACTCTAGTATCAATATGGCAAGGAATAACTACAGAGTTCGGTCTTTCCATGCAGCTGCAACGCCAACGGCTTCGTCTGAAGCTAGTTGGAATAGCCAGACTGGATTGTTATCTCATCCTCCTGGTACAGTTGCGGTTTCTTTGCGAAGTCCAATTCATCATCATGATCACAAGAAAAGTAGAGGAATGGTCTCATCGCCATCGCTTTCGTCTTCTCCGAGGGTGAGGTGGTTTAGTTTTCCAAGAAGATGTCCATGCTCTGGTAAGAAATCAGTTCGAGTTGAGGAAAAAATGTCATCGAAGCAACCAGCTAAGACCTCAGCATCACACTTCACTGCAGCAGCAGCAGCAGCGCCGAGGAGTATTTCATTAGATCTCAGAAATCAAACACCCAAGTCGAAGTCAGTGGTGCAGGCAGCGCGTGATGACCAGCATGTGATGTGGGAAGAGGAACGTCGTCGTCGTTGGGAGGAGCAGATGACTGTTAATATACCATCCGCTGGAAACCCTCATAGTCGTTTATTCAGGCCACTTCCCGTTGCTGCTACGGAGTTGCAAGTACAGCATGCTAACGCCTTCAGTTTTCCCATTTTGAAACTGAATGGGAGTGGAACAGCGTGGTCCTCATCGTCCCCTATGTTGAAGTCGCAGCAGCAGGCTGTGACTATAAAACAAGAACCAACTCTGCAGGTACTAGAAAGTGTGGAACCTTTAACTAGTACTGATGAACAATCATCCACGACTATTTCTATTCACAAGTCTACTACTACTACTAATGGTAGTACTGATCACTCGAGTCTTGGTTTCACATTCCCTGCAAGTCCCAAATCCCGAGTAGTTATGAGCAATGATGAGGATTTGGGAAGCGATGCAAGTTCTGACTTATTTGAGATTGAAAGCTTCTCTACAAGTACTCAAACAACAGCGAATGCTAACAACTATCCATCAGTGTTATACCACCAATACAACAACTACCGCAGGGATTCAATGGAAGATGATGCCTCTAGCTTTAATGCTATTAGAGGTTTGTATCGCAGGAGAAGCAGCTTAGACATTGAGCCAATGACACCTTCATCAGCGGAGTACTGCTACGAGCCTAGTGAAGCAAGCATAGACTGGAGTGTGACCACTGCAGAGGGGTTAGACCGGCCCAGCACATCGTCGGAAGTTGATCACCACCAAGATGAGCTGGAAAAGATGAGCAGACGACGGTCGTCGTCAATAGGGAGTTACGGGTTGTTGAGCTGTCGATGGGAGAAGGCGGTGAGCGTGGGACCAATTCCAGTGAGACTAGTGAGTAGTATGCCTGCTGGTGCTAGTACTGATGCCGGTGCTGCAGTTGTTGTTTGTGATGAGGTGATTAAGCATGTCGGGAGTAGGCCACCCTTACCCAATAAACCACGCTGCTCTCACTTGTCTATTTCTTTTGCAACATCATCCCATTCATAG

Protein Analysis

592

Amino Acids

64.69

Weight (kDa)

7.35

Isoelectric Point (pI)

65.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014149)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04190
fragaria_vesca FvH4_4g10470
malus_domestica MD12G1110900.v1.1
prunus_persica Prupe.7G023100_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0495011
rosa_laevigata RLG00000022656
rosa_multiflora Rmu_co8188214.1_g000001 Rmu_ssc0000058.1_g000001
rosa_roxburghii Rroxscaffold_4G00319360 Rroxscaffold_6G00390850
rosa_rugosa Rorug03G0269300
rosa_samantha Rh3BG353200 Rh3CG313700 Rh3CG350100 Rh3CG350300 Rh3DG352600
rosa_wichuraiana Rw3G027740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1006
AccB7I CCANNNNNTGG 2 cut(s) 587, 827
AccI GTMKAC 1 cut(s) 1088
AccII CGCG 1 cut(s) 748
AciI CCGC 6 cut(s) 110, 461, 825, 1303, 1406, 1589
AcoI YGGCCR 1 cut(s) 252
AcuI CTGAAG 2 cut(s) 426, 889
AfiI CCNNNNNNNGG 2 cut(s) 587, 827
AgsI TTSAA 5 cut(s) 160, 922, 970, 1223, 1314
AhlI ACTAGT 2 cut(s) 1043, 1618
AjnI CCWGG 1 cut(s) 448
AjuI GAANNNNNNNTTGG 2 cut(s) 1381, 1413
AluBI AGCT 8 cut(s) 383, 410, 638, 1227, 1335, 1374, 1516, 1572
AluI AGCT 8 cut(s) 383, 410, 638, 1227, 1335, 1374, 1516, 1572
Alw26I GTCTC 3 cut(s) 42, 523, 1609
Ama87I CYCGRG 2 cut(s) 1120, 1158
AoxI GGCC 5 cut(s) 144, 252, 854, 1475, 1706
AspLEI GCGC 2 cut(s) 682, 748
AspS9I GGNCC 4 cut(s) 145, 948, 1476, 1601
AsuHPI GGTGA 5 cut(s) 125, 562, 1493, 1603, 1696
AvaI CYCGRG 2 cut(s) 1120, 1158
AvaII GGWCC 2 cut(s) 948, 1601
BaeI ACNNNNGTAYC 2 cut(s) 319, 352
BalI TGGCCA 1 cut(s) 254
BbsI GAAGAC 1 cut(s) 531
BbvCI CCTCAGC 1 cut(s) 646
BccI CCATC 6 cut(s) 92, 176, 535, 829, 1279, 1572
BceAI ACGGC 1 cut(s) 411
BciT130I CCWGG 1 cut(s) 450
BclI TGATCA 3 cut(s) 493, 1114, 1498
BcoDI GTCTC 3 cut(s) 42, 523, 1609
BcuI ACTAGT 2 cut(s) 1043, 1618
BfaI CTAG 9 cut(s) 291, 333, 411, 1022, 1044, 1332, 1425, 1619, 1644
BfmI CTRYAG 5 cut(s) 358, 663, 1013, 1458, 1662
BfoI RGCGCY 1 cut(s) 683
BfuAI ACCTGC 1 cut(s) 1006
BglII AGATCT 1 cut(s) 700
BmcAI AGTACT 7 cut(s) 155, 329, 1048, 1111, 1240, 1412, 1648
Bme1390I CCNGG 1 cut(s) 450
Bme18I GGWCC 2 cut(s) 948, 1601
BmeT110I CYCGRG 2 cut(s) 1120, 1158
BmgT120I GGNCC 4 cut(s) 145, 948, 1476, 1601
BmiI GGNNCC 2 cut(s) 1035, 1602
BmrFI CCNGG 1 cut(s) 450
BmsI GCATC 5 cut(s) 68, 659, 1186, 1315, 1642
BoxI GACNNNNGTC 2 cut(s) 1537, 1540
BpiI GAAGAC 1 cut(s) 531
BpmI CTGGAG 1 cut(s) 1465
Bpu10I CCTNAGC 1 cut(s) 646
BsaBI GATNNNNATC 1 cut(s) 436
BsaI GGTCTC 1 cut(s) 523
BsaJI CCNNGG 2 cut(s) 545, 683
Bsc4I CCNNNNNNNGG 2 cut(s) 587, 827
Bse118I RCCGGY 2 cut(s) 1473, 1655
Bse1I ACTGG 3 cut(s) 433, 1448, 1610
Bse3DI GCAATG 1 cut(s) 1180
Bse8I GATNNNNATC 1 cut(s) 436
BseBI CCWGG 1 cut(s) 450
BseDI CCNNGG 2 cut(s) 545, 683
BseGI GGATG 6 cut(s) 103, 311, 442, 821, 1061, 1763
BseJI GATNNNNATC 1 cut(s) 436
BseLI CCNNNNNNNGG 2 cut(s) 587, 827
BseMI GCAATG 1 cut(s) 1180
BseMII CTCAG 2 cut(s) 660, 718
BseNI ACTGG 3 cut(s) 433, 1448, 1610
BseRI GAGGAG 3 cut(s) 234, 700, 812
BseYI CCCAGC 1 cut(s) 1478
BsgI GTGCAG 1 cut(s) 758
Bsh1236I CGCG 1 cut(s) 748
Bsh1285I CGRYCG 1 cut(s) 1541
BshFI GGCC 5 cut(s) 146, 254, 856, 1477, 1708
BsiEI CGRYCG 1 cut(s) 1541
BsiHKCI CYCGRG 2 cut(s) 1120, 1158
BsiSI CCGG 2 cut(s) 1474, 1656
BslFI GGGAC 3 cut(s) 943, 1134, 1614
BslI CCNNNNNNNGG 2 cut(s) 587, 827
BsmAI GTCTC 3 cut(s) 42, 523, 1609
BsmFI GGGAC 3 cut(s) 943, 1134, 1614
BsmI GAATGC 1 cut(s) 1261
BsnI GGCC 5 cut(s) 146, 254, 856, 1477, 1708
Bso31I GGTCTC 1 cut(s) 523
BsoBI CYCGRG 2 cut(s) 1120, 1158
Bsp143I GATC 6 cut(s) 8, 85, 493, 700, 1114, 1498
BspACI CCGC 6 cut(s) 110, 461, 825, 1303, 1406, 1589
BspANI GGCC 5 cut(s) 146, 254, 856, 1477, 1708
BspCNI CTCAG 2 cut(s) 659, 717
BspFNI CGCG 1 cut(s) 748
BspHI TCATGA 2 cut(s) 319, 490
BspLI GGNNCC 2 cut(s) 1035, 1602
BspMAI CTGCAG 4 cut(s) 667, 1017, 1462, 1666
BspMI ACCTGC 1 cut(s) 1006
BspTNI GGTCTC 1 cut(s) 523
BsrDI GCAATG 1 cut(s) 1180
BsrFI RCCGGY 2 cut(s) 1473, 1655
BsrI ACTGG 3 cut(s) 433, 1448, 1610
BssAI RCCGGY 2 cut(s) 1473, 1655
BssECI CCNNGG 2 cut(s) 545, 683
BssMI GATC 6 cut(s) 8, 85, 493, 700, 1114, 1498
Bst2UI CCWGG 1 cut(s) 450
Bst4CI ACNGT 3 cut(s) 457, 811, 1539
Bst6I CTCTTC 1 cut(s) 768
BstC8I GCNNGC 7 cut(s) 190, 288, 741, 894, 984, 1435, 1635
BstDEI CTNAG 4 cut(s) 639, 646, 704, 1375
BstF5I GGATG 6 cut(s) 103, 311, 442, 821, 1061, 1763
BstFNI CGCG 1 cut(s) 748
BstH2I RGCGCY 1 cut(s) 683
BstHHI GCGC 2 cut(s) 682, 748
BstKTI GATC 6 cut(s) 11, 88, 496, 703, 1117, 1501
BstMAI GTCTC 3 cut(s) 42, 523, 1609
BstMBI GATC 6 cut(s) 8, 85, 493, 700, 1114, 1498
BstMCI CGRYCG 1 cut(s) 1541
BstMWI GCNNNNNNNGC 8 cut(s) 36, 671, 674, 677, 745, 889, 1368, 1661
BstNI CCWGG 1 cut(s) 450
BstNSI RCATGY 4 cut(s) 290, 764, 896, 1697
BstPAI GACNNNNGTC 2 cut(s) 1537, 1540
BstSCI CCNGG 1 cut(s) 448
BstSFI CTRYAG 5 cut(s) 358, 663, 1013, 1458, 1662
BstUI CGCG 1 cut(s) 748
BstV2I GAAGAC 1 cut(s) 531
BstX2I RGATCY 1 cut(s) 700
BstYI RGATCY 1 cut(s) 700
BsuRI GGCC 5 cut(s) 146, 254, 856, 1477, 1708
BtgZI GCGATG 3 cut(s) 507, 513, 1209
BtsCI GGATG 6 cut(s) 103, 311, 442, 821, 1061, 1763
BtsI GCAGTG 2 cut(s) 660, 1455
BtsIMutI CAGTG 7 cut(s) 123, 171, 660, 738, 1281, 1455, 1617
BveI ACCTGC 1 cut(s) 1006
Cac8I GCNNGC 7 cut(s) 190, 288, 741, 894, 984, 1435, 1635
CciI TCATGA 2 cut(s) 319, 490
CfoI GCGC 2 cut(s) 682, 748
Cfr10I RCCGGY 2 cut(s) 1473, 1655
Cfr13I GGNCC 4 cut(s) 145, 948, 1476, 1601
DdeI CTNAG 4 cut(s) 639, 646, 704, 1375
DpnI GATC 6 cut(s) 10, 87, 495, 702, 1116, 1500
DpnII GATC 6 cut(s) 8, 85, 493, 700, 1114, 1498
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 768
EarI CTCTTC 1 cut(s) 768
Eco31I GGTCTC 1 cut(s) 523
Eco47I GGWCC 2 cut(s) 948, 1601
Eco57I CTGAAG 2 cut(s) 426, 889
Eco88I CYCGRG 2 cut(s) 1120, 1158
EcoRII CCWGG 1 cut(s) 448
EcoT22I ATGCAT 1 cut(s) 61
FaqI GGGAC 3 cut(s) 943, 1134, 1614
FauI CCCGC 1 cut(s) 103
FbaI TGATCA 3 cut(s) 493, 1114, 1498
FblI GTMKAC 1 cut(s) 1088
FokI GGATG 6 cut(s) 110, 298, 429, 808, 1048, 1750
FspBI CTAG 9 cut(s) 291, 333, 411, 1022, 1044, 1332, 1425, 1619, 1644
GlaI GCGC 2 cut(s) 681, 747
GsaI CCCAGC 1 cut(s) 1482
GsuI CTGGAG 1 cut(s) 1465
HaeII RGCGCY 1 cut(s) 683
HaeIII GGCC 5 cut(s) 146, 254, 856, 1477, 1708
HapII CCGG 2 cut(s) 1474, 1656
HhaI GCGC 2 cut(s) 682, 748
Hin6I GCGC 2 cut(s) 680, 746
HinP1I GCGC 2 cut(s) 680, 746
HindIII AAGCTT 1 cut(s) 1225
HinfI GANTC 3 cut(s) 294, 1123, 1310
HpaII CCGG 2 cut(s) 1474, 1656
HphI GGTGA 5 cut(s) 125, 562, 1493, 1603, 1696
Hpy166II GTNNAC 1 cut(s) 1089
Hpy188I TCNGA 5 cut(s) 406, 546, 707, 1207, 1492
Hpy188III TCNNGA 5 cut(s) 89, 320, 491, 1158, 1699
Hpy8I GTNNAC 1 cut(s) 1089
Hpy99I CGWCG 6 cut(s) 786, 789, 792, 1492, 1539, 1546
HpyAV CCTTC 3 cut(s) 913, 1407, 1579
HpyCH4III ACNGT 3 cut(s) 457, 811, 1539
HpyCH4IV ACGT 1 cut(s) 781
HpyF10VI GCNNNNNNNGC 8 cut(s) 36, 671, 674, 677, 745, 889, 1368, 1661
HpyF3I CTNAG 4 cut(s) 639, 646, 704, 1375
HpySE526I ACGT 1 cut(s) 781
HspAI GCGC 2 cut(s) 680, 746
Ksp22I TGATCA 3 cut(s) 493, 1114, 1498
Kzo9I GATC 6 cut(s) 8, 85, 493, 700, 1114, 1498
LmnI GCTCC 2 cut(s) 280, 799
LweI GCATC 5 cut(s) 68, 659, 1186, 1315, 1642
MaeI CTAG 9 cut(s) 291, 333, 411, 1022, 1044, 1332, 1425, 1619, 1644
MaeII ACGT 1 cut(s) 781
MaeIII GTNAC 3 cut(s) 988, 1450, 1556
MalI GATC 6 cut(s) 10, 87, 495, 702, 1116, 1500
MboI GATC 6 cut(s) 8, 85, 493, 700, 1114, 1498
MboII GAAGA 4 cut(s) 531, 585, 785, 1331
MflI RGATCY 1 cut(s) 700
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 3 cut(s) 42, 480, 1605
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 1 cut(s) 1132
MmeI TCCRAC 2 cut(s) 395, 1470
Mox20I TGGCCA 1 cut(s) 254
Mph1103I ATGCAT 1 cut(s) 61
MscI TGGCCA 1 cut(s) 254
MseI TTAA 6 cut(s) 219, 225, 813, 1040, 1338, 1689
MslI CAYNNNNRTG 2 cut(s) 489, 1509
Msp20I TGGCCA 1 cut(s) 254
MspA1I CMGCKG 3 cut(s) 383, 827, 1406
MspI CCGG 2 cut(s) 1474, 1656
MspR9I CCNGG 1 cut(s) 450
Mva1269I GAATGC 1 cut(s) 1261
MvaI CCWGG 1 cut(s) 450
MvnI CGCG 1 cut(s) 748
MwoI GCNNNNNNNGC 8 cut(s) 36, 671, 674, 677, 745, 889, 1368, 1661
NdeII GATC 6 cut(s) 8, 85, 493, 700, 1114, 1498
NlaIV GGNNCC 2 cut(s) 1035, 1602
NmeAIII GCCGAG 1 cut(s) 708
NmuCI GTSAC 2 cut(s) 988, 1450
NsiI ATGCAT 1 cut(s) 61
NspI RCATGY 4 cut(s) 290, 764, 896, 1697
PaeI GCATGC 2 cut(s) 290, 896
PaeR7I CTCGAG 1 cut(s) 1120
PagI TCATGA 2 cut(s) 319, 490
PcsI WCGNNNNNNNCGW 2 cut(s) 542, 787
PctI GAATGC 1 cut(s) 1261
PfeI GAWTC 2 cut(s) 294, 1310
PflMI CCANNNNNTGG 2 cut(s) 587, 827
PleI GAGTC 1 cut(s) 1131
PpsI GAGTC 1 cut(s) 1131
PshAI GACNNNNGTC 2 cut(s) 1537, 1540
Psp6I CCWGG 1 cut(s) 448
PspFI CCCAGC 1 cut(s) 1478
PspGI CCWGG 1 cut(s) 448
PspN4I GGNNCC 2 cut(s) 1035, 1602
PspPI GGNCC 4 cut(s) 145, 948, 1476, 1601
PspXI VCTCGAGB 1 cut(s) 1120
PstI CTGCAG 4 cut(s) 667, 1017, 1462, 1666
PsuI RGATCY 1 cut(s) 700
PvuII CAGCTG 1 cut(s) 383
RseI CAYNNNNRTG 2 cut(s) 489, 1509
SaqAI TTAA 6 cut(s) 219, 225, 813, 1040, 1338, 1689
Sau3AI GATC 6 cut(s) 8, 85, 493, 700, 1114, 1498
Sau96I GGNCC 4 cut(s) 145, 948, 1476, 1601
ScaI AGTACT 7 cut(s) 155, 329, 1048, 1111, 1240, 1412, 1648
SchI GAGTC 1 cut(s) 1132
ScrFI CCNGG 1 cut(s) 450
SfaNI GCATC 5 cut(s) 68, 659, 1186, 1315, 1642
SfcI CTRYAG 5 cut(s) 358, 663, 1013, 1458, 1662
Sfr274I CTCGAG 1 cut(s) 1120
SinI GGWCC 2 cut(s) 948, 1601
SlaI CTCGAG 1 cut(s) 1120
SmiMI CAYNNNNRTG 2 cut(s) 489, 1509
SmlI CTYRAG 1 cut(s) 1120
SmoI CTYRAG 1 cut(s) 1120
SpeI ACTAGT 2 cut(s) 1043, 1618
SphI GCATGC 2 cut(s) 290, 896
Sse9I AATT 3 cut(s) 42, 480, 1605
SsiI CCGC 6 cut(s) 110, 461, 825, 1303, 1406, 1589
SspMI CTAG 9 cut(s) 291, 333, 411, 1022, 1044, 1332, 1425, 1619, 1644
StyD4I CCNGG 1 cut(s) 448
TaaI ACNGT 3 cut(s) 457, 811, 1539
TaiI ACGT 1 cut(s) 784
TaqI TCGA 6 cut(s) 270, 604, 626, 725, 1121, 1576
TaqII GACCGA 1 cut(s) 357
TasI AATT 3 cut(s) 42, 480, 1605
TatI WGTACW 8 cut(s) 153, 327, 886, 1046, 1109, 1238, 1410, 1646
TfiI GAWTC 2 cut(s) 294, 1310
Tru1I TTAA 6 cut(s) 219, 225, 813, 1040, 1338, 1689
Tru9I TTAA 6 cut(s) 219, 225, 813, 1040, 1338, 1689
TscAI CASTG 7 cut(s) 130, 178, 667, 738, 1281, 1462, 1617
TseFI GTSAC 2 cut(s) 988, 1450
Tsp45I GTSAC 2 cut(s) 988, 1450
TspDTI ATGAA 6 cut(s) 308, 473, 684, 1068, 1389, 1761
TspGWI ACGGA 2 cut(s) 304, 890
TspRI CASTG 7 cut(s) 130, 178, 667, 738, 1281, 1462, 1617
Van91I CCANNNNNTGG 2 cut(s) 587, 827
VpaK11BI GGWCC 2 cut(s) 948, 1601
XceI RCATGY 4 cut(s) 290, 764, 896, 1697
XhoI CTCGAG 1 cut(s) 1120
XmiI GTMKAC 1 cut(s) 1088
XspI CTAG 9 cut(s) 291, 333, 411, 1022, 1044, 1332, 1425, 1619, 1644
ZrmI AGTACT 7 cut(s) 155, 329, 1048, 1111, 1240, 1412, 1648
Zsp2I ATGCAT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.