Rh3DG352600

phytochrome kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0014149
Physical Location & Seq
Forward (+)
42376815 .. 42378038
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG352600.1

Sequence Viewer

Length: 1224 bp
ATGGCCGCATCGCCATCGTCTTCGTCTTCTCCGAGAGTGAGATGGTTTAGTTTTCCAAGAAGATGTCCATGCTCTGGCAAGAAATCAGTTCGAGTTGAGGAAAAAATGTCATCACAGCAACCGGCTAAGACCTCATCATCACACTGCACAGCAGCAGCAGCCGCCCCGAGGACTGTATCCTTGGATCTCAGAAATCAAACACCCAAGTCAAAGTCCGTGGTGGCAGCGAGTGGCGACCAGCATTTGATGTGGGATGAAGAACATCGTCGTCGTTGGGAGGGGCAGATGACTGTTAAGATACCATCAGCTGGAAACCCCCATAATCGATTATTCAGACCTCTTCCTGCTGCTGCGGAGATGCAAGCACAACATACTAACGCCTTTAGCTTTCCCATATTGAAACTGAATGGGAGGGGCACATCGTGGTCCTCGTCGTCACCAATGTTGAAGTTGCAGCAGCAGCCTGCTACTGTAAAACAAGAACCAACTCTGGGACGGGAAGGTCTGGAACCCTTGACTACTAGTACTGATGAACAATCATCCACAACTATTTCAATCCACAAGCCTATTACTACTAGTACTGATCACTCGAGTACTGGTTTCACATTCCCTGCAAGCCCCAAATCCCGAGTAATTGTAAGCAATGATGACGATTTGGGAAGCGATGCAAGCTCTGATTTATTCGAGATTGAAAGCTTCTCTACTAGTACTCAAACAACAGCTACTGCCAACAACTACCCATCAGTGTTGTACCAATACAACAACTACCGCAGGGATTCAATGGAAGATGATGCCTCCAGCTTTAATGCTATTAGAGGTTTGTATCGCCGGCGAAGCAGCTTAGATAATGAGCCAATGACGACTTCATCAGCCGAGTACTGCTACGAGCCTAGTGAAGCAAGCATAGACTGGAGTGTAACCACCGCAGAGGGGTTGGACCGGCCCAGCACATCATCGGAAGCAGATTACCATCAAGATGAGCTGGAAAAGATGAGCAGACGACGCTCGTCATCCGCAGGGAGTTATGGGTTGTTGAGCTGTCGATGGGAGAAGGCGGTGAGCGTGGGGCCGAACCCAGTGAGACTAGTGAGTAGTATGCCTGCTGGTGCTAGTGCTGGTGCTGTTGGTGAGGTGATGAAGCATGTGGGGAGTAGGCCACCCTTACCCTATAAACCACGCTGCTCTCACTTGTCTATTCCTTCTGCAACATCATTCCATTCATAG

Protein Analysis

407

Amino Acids

44.44

Weight (kDa)

8.66

Isoelectric Point (pI)

68.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014149)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04190
fragaria_vesca FvH4_4g10470
malus_domestica MD12G1110900.v1.1
prunus_persica Prupe.7G023100_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0495011
rosa_laevigata RLG00000022656
rosa_multiflora Rmu_co8188214.1_g000001 Rmu_ssc0000058.1_g000001
rosa_roxburghii Rroxscaffold_4G00319360 Rroxscaffold_6G00390850
rosa_rugosa Rorug03G0269300
rosa_samantha Rh3BG353200 Rh3CG313700 Rh3CG350100 Rh3CG350300 Rh3DG352600
rosa_wichuraiana Rw3G027740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 501
AccB7I CCANNNNNTGG 2 cut(s) 74, 308
AciI CCGC 7 cut(s) 6, 162, 353, 769, 924, 1014, 1055
AclWI GGATC 1 cut(s) 192
AcoI YGGCCR 1 cut(s) 3
AdeI CACNNNGTG 1 cut(s) 423
AfaI GTAC 6 cut(s) 526, 580, 595, 709, 752, 878
AfiI CCNNNNNNNGG 5 cut(s) 74, 168, 308, 491, 930
AgsI TTSAA 5 cut(s) 400, 448, 555, 692, 780
AhlI ACTAGT 4 cut(s) 521, 575, 704, 1084
AjuI GAANNNNNNNTTGG 2 cut(s) 847, 879
AluBI AGCT 9 cut(s) 308, 387, 672, 696, 722, 801, 840, 982, 1038
AluI AGCT 9 cut(s) 308, 387, 672, 696, 722, 801, 840, 982, 1038
Alw26I GTCTC 1 cut(s) 1075
AlwI GGATC 1 cut(s) 192
AlwNI CAGNNNCTG 1 cut(s) 725
Ama87I CYCGRG 3 cut(s) 166, 589, 627
AoxI GGCC 4 cut(s) 3, 941, 1067, 1154
AspS9I GGNCC 4 cut(s) 426, 937, 942, 1067
AsuHPI GGTGA 4 cut(s) 429, 1069, 1139, 1144
AvaI CYCGRG 3 cut(s) 166, 589, 627
AvaII GGWCC 2 cut(s) 426, 937
BaeGI GKGCMC 1 cut(s) 419
BbsI GAAGAC 2 cut(s) 12, 18
BccI CCATC 6 cut(s) 22, 36, 310, 748, 978, 1038
BcgI CGANNNNNNTGC 1 cut(s) 31
BciVI GTATCC 1 cut(s) 187
BclI TGATCA 1 cut(s) 583
BcoDI GTCTC 1 cut(s) 1075
BcuI ACTAGT 4 cut(s) 521, 575, 704, 1084
BfaI CTAG 6 cut(s) 522, 576, 705, 891, 1085, 1110
BfuI GTATCC 1 cut(s) 187
BmcAI AGTACT 5 cut(s) 526, 580, 595, 709, 878
Bme18I GGWCC 2 cut(s) 426, 937
BmeT110I CYCGRG 3 cut(s) 166, 589, 627
BmgT120I GGNCC 4 cut(s) 426, 937, 942, 1067
BmiI GGNNCC 2 cut(s) 510, 1068
BmrI ACTGGG 1 cut(s) 1070
BmsI GCATC 4 cut(s) 17, 348, 655, 781
BmuI ACTGGG 1 cut(s) 1070
BoxI GACNNNNGTC 1 cut(s) 1006
BpiI GAAGAC 2 cut(s) 12, 18
BpmI CTGGAG 2 cut(s) 781, 931
Bsa29I ATCGAT 1 cut(s) 325
BsaBI GATNNNNATC 1 cut(s) 969
BsaJI CCNNGG 3 cut(s) 167, 180, 216
Bsc4I CCNNNNNNNGG 5 cut(s) 74, 168, 308, 491, 930
Bse118I RCCGGY 3 cut(s) 121, 828, 939
Bse1I ACTGG 3 cut(s) 601, 914, 1076
Bse3DI GCAATG 1 cut(s) 649
Bse8I GATNNNNATC 1 cut(s) 969
BseCI ATCGAT 1 cut(s) 325
BseDI CCNNGG 3 cut(s) 167, 180, 216
BseGI GGATG 3 cut(s) 259, 539, 1010
BseJI GATNNNNATC 1 cut(s) 969
BseLI CCNNNNNNNGG 5 cut(s) 74, 168, 308, 491, 930
BseMI GCAATG 1 cut(s) 649
BseMII CTCAG 1 cut(s) 202
BseNI ACTGG 3 cut(s) 601, 914, 1076
BseSI GKGCMC 1 cut(s) 419
BseYI CCCAGC 1 cut(s) 944
BsgI GTGCAG 1 cut(s) 130
BshFI GGCC 4 cut(s) 5, 943, 1069, 1156
BshVI ATCGAT 1 cut(s) 325
BsiHKCI CYCGRG 3 cut(s) 166, 589, 627
BsiSI CCGG 3 cut(s) 122, 829, 940
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 5 cut(s) 74, 168, 308, 491, 930
BsmAI GTCTC 1 cut(s) 1075
BsmFI GGGAC 1 cut(s) 507
BsnI GGCC 4 cut(s) 5, 943, 1069, 1156
BsoBI CYCGRG 3 cut(s) 166, 589, 627
Bsp1286I GDGCHC 1 cut(s) 419
Bsp143I GATC 2 cut(s) 184, 583
BspACI CCGC 7 cut(s) 6, 162, 353, 769, 924, 1014, 1055
BspANI GGCC 4 cut(s) 5, 943, 1069, 1156
BspCNI CTCAG 1 cut(s) 201
BspDI ATCGAT 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 510, 1068
BspPI GGATC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 649
BsrFI RCCGGY 3 cut(s) 121, 828, 939
BsrI ACTGG 3 cut(s) 601, 914, 1076
BssAI RCCGGY 3 cut(s) 121, 828, 939
BssECI CCNNGG 3 cut(s) 167, 180, 216
BssMI GATC 2 cut(s) 184, 583
BssT1I CCWWGG 1 cut(s) 180
Bst4CI ACNGT 3 cut(s) 175, 292, 472
Bst6I CTCTTC 1 cut(s) 345
BstC8I GCNNGC 7 cut(s) 363, 465, 616, 670, 830, 901, 1101
BstDEI CTNAG 3 cut(s) 126, 188, 841
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 3 cut(s) 259, 539, 1010
BstKTI GATC 2 cut(s) 187, 586
BstMAI GTCTC 1 cut(s) 1075
BstMBI GATC 2 cut(s) 184, 583
BstMWI GCNNNNNNNGC 6 cut(s) 158, 161, 460, 669, 834, 1002
BstNSI RCATGY 1 cut(s) 1145
BstPAI GACNNNNGTC 1 cut(s) 1006
BstSLI GKGCMC 1 cut(s) 419
BstV2I GAAGAC 2 cut(s) 12, 18
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
Bsu15I ATCGAT 1 cut(s) 325
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 4 cut(s) 5, 943, 1069, 1156
BsuTUI ATCGAT 1 cut(s) 325
BtgI CCRYGG 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 678
BtsCI GGATG 3 cut(s) 259, 539, 1010
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 3 cut(s) 142, 750, 1083
Cac8I GCNNGC 7 cut(s) 363, 465, 616, 670, 830, 901, 1101
CaiI CAGNNNCTG 1 cut(s) 725
Cfr10I RCCGGY 3 cut(s) 121, 828, 939
Cfr13I GGNCC 4 cut(s) 426, 937, 942, 1067
ClaI ATCGAT 1 cut(s) 325
CseI GACGC 1 cut(s) 1011
Csp6I GTAC 6 cut(s) 525, 579, 594, 708, 751, 877
CspCI CAANNNNNGTGG 2 cut(s) 198, 233
CviAII CATG 2 cut(s) 69, 1142
CviQI GTAC 6 cut(s) 525, 579, 594, 708, 751, 877
DdeI CTNAG 3 cut(s) 126, 188, 841
DpnI GATC 2 cut(s) 186, 585
DpnII GATC 2 cut(s) 184, 583
DraIII CACNNNGTG 1 cut(s) 423
DrdI GACNNNNNNGTC 1 cut(s) 501
DseDI GACNNNNNNGTC 1 cut(s) 501
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 180
Eco47I GGWCC 2 cut(s) 426, 937
Eco88I CYCGRG 3 cut(s) 166, 589, 627
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 2 cut(s) 72, 1145
FaqI GGGAC 1 cut(s) 507
FatI CATG 2 cut(s) 68, 1141
FbaI TGATCA 1 cut(s) 583
FokI GGATG 3 cut(s) 266, 526, 997
FspBI CTAG 6 cut(s) 522, 576, 705, 891, 1085, 1110
GsaI CCCAGC 1 cut(s) 948
GsuI CTGGAG 2 cut(s) 781, 931
HaeIII GGCC 4 cut(s) 5, 943, 1069, 1156
HapII CCGG 3 cut(s) 122, 829, 940
HgaI GACGC 1 cut(s) 1011
Hin1II CATG 2 cut(s) 72, 1145
HindIII AAGCTT 1 cut(s) 694
HinfI GANTC 1 cut(s) 776
HpaII CCGG 3 cut(s) 122, 829, 940
HphI GGTGA 4 cut(s) 429, 1069, 1139, 1144
Hpy188I TCNGA 5 cut(s) 33, 191, 335, 676, 958
Hpy188III TCNNGA 4 cut(s) 506, 627, 685, 974
Hpy99I CGWCG 4 cut(s) 270, 273, 436, 1005
HpyAV CCTTC 3 cut(s) 494, 1045, 1209
HpyCH4III ACNGT 3 cut(s) 175, 292, 472
HpyCH4V TGCA 6 cut(s) 147, 361, 454, 614, 668, 1205
HpyF10VI GCNNNNNNNGC 6 cut(s) 158, 161, 460, 669, 834, 1002
HpyF3I CTNAG 3 cut(s) 126, 188, 841
Hsp92II CATG 2 cut(s) 72, 1145
KroI GCCGGC 1 cut(s) 828
KroNI GCCGGC 1 cut(s) 830
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 2 cut(s) 184, 583
LweI GCATC 4 cut(s) 17, 348, 655, 781
MaeI CTAG 6 cut(s) 522, 576, 705, 891, 1085, 1110
MaeIII GTNAC 2 cut(s) 435, 916
MalI GATC 2 cut(s) 186, 585
MboI GATC 2 cut(s) 184, 583
MboII GAAGA 6 cut(s) 12, 18, 72, 269, 332, 797
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 419
MluCI AATT 1 cut(s) 633
MmeI TCCRAC 1 cut(s) 915
MreI CGCCGGCG 1 cut(s) 828
MroNI GCCGGC 1 cut(s) 828
MseI TTAA 2 cut(s) 294, 804
MslI CAYNNNNRTG 1 cut(s) 975
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 3 cut(s) 122, 829, 940
MwoI GCNNNNNNNGC 6 cut(s) 158, 161, 460, 669, 834, 1002
NaeI GCCGGC 1 cut(s) 830
NdeII GATC 2 cut(s) 184, 583
NgoMIV GCCGGC 1 cut(s) 828
NlaIII CATG 2 cut(s) 72, 1145
NlaIV GGNNCC 2 cut(s) 510, 1068
NmeAIII GCCGAG 1 cut(s) 898
NmuCI GTSAC 1 cut(s) 435
NspI RCATGY 1 cut(s) 1145
PaeR7I CTCGAG 1 cut(s) 589
PcsI WCGNNNNNNNCGW 2 cut(s) 29, 428
PdiI GCCGGC 1 cut(s) 830
PfeI GAWTC 1 cut(s) 776
PflMI CCANNNNNTGG 2 cut(s) 74, 308
PshAI GACNNNNGTC 1 cut(s) 1006
PspFI CCCAGC 1 cut(s) 944
PspN4I GGNNCC 2 cut(s) 510, 1068
PspPI GGNCC 4 cut(s) 426, 937, 942, 1067
PspXI VCTCGAGB 1 cut(s) 589
PstNI CAGNNNCTG 1 cut(s) 725
PsuI RGATCY 1 cut(s) 184
PvuII CAGCTG 1 cut(s) 308
RsaI GTAC 6 cut(s) 526, 580, 595, 709, 752, 878
RsaNI GTAC 6 cut(s) 525, 579, 594, 708, 751, 877
RseI CAYNNNNRTG 1 cut(s) 975
SaqAI TTAA 2 cut(s) 294, 804
Sau3AI GATC 2 cut(s) 184, 583
Sau96I GGNCC 4 cut(s) 426, 937, 942, 1067
ScaI AGTACT 5 cut(s) 526, 580, 595, 709, 878
SduI GDGCHC 1 cut(s) 419
SfaNI GCATC 4 cut(s) 17, 348, 655, 781
Sfr274I CTCGAG 1 cut(s) 589
SgrAI CRCCGGYG 1 cut(s) 828
SinI GGWCC 2 cut(s) 426, 937
SlaI CTCGAG 1 cut(s) 589
SmiMI CAYNNNNRTG 1 cut(s) 975
SmlI CTYRAG 1 cut(s) 589
SmoI CTYRAG 1 cut(s) 589
SpeI ACTAGT 4 cut(s) 521, 575, 704, 1084
Sse9I AATT 1 cut(s) 633
SsiI CCGC 7 cut(s) 6, 162, 353, 769, 924, 1014, 1055
SspMI CTAG 6 cut(s) 522, 576, 705, 891, 1085, 1110
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 3 cut(s) 175, 292, 472
TaqI TCGA 5 cut(s) 91, 325, 590, 684, 1042
TasI AATT 1 cut(s) 633
TatI WGTACW 5 cut(s) 524, 578, 593, 707, 876
TauI GCSGC 2 cut(s) 8, 164
TfiI GAWTC 1 cut(s) 776
Tru1I TTAA 2 cut(s) 294, 804
Tru9I TTAA 2 cut(s) 294, 804
TscAI CASTG 3 cut(s) 149, 750, 1083
TseFI GTSAC 1 cut(s) 435
Tsp45I GTSAC 1 cut(s) 435
TspDTI ATGAA 5 cut(s) 270, 546, 855, 1151, 1209
TspGWI ACGGA 1 cut(s) 205
TspRI CASTG 3 cut(s) 149, 750, 1083
Van91I CCANNNNNTGG 2 cut(s) 74, 308
VpaK11BI GGWCC 2 cut(s) 426, 937
XceI RCATGY 1 cut(s) 1145
XhoI CTCGAG 1 cut(s) 589
XspI CTAG 6 cut(s) 522, 576, 705, 891, 1085, 1110
ZrmI AGTACT 5 cut(s) 526, 580, 595, 709, 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.