Rh3CG350100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0014149
Physical Location & Seq
Forward (+)
41958300 .. 42020053
61754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG350100.1

Sequence Viewer

Length: 438 bp
ATGAGTCGTCCCGACCCACCTCCTCCAATACCTCTGCCCTCCCGTCTACTTCAGACGCTTTCACCGAGAGCCCAAGAGGCTTCTGGTAGAATATCTAAGCAATGCACGACCTTAAGAGAGGAGCGTGGCATGGCTTGTGGAATGATTTTGCCTGATTTGAATATTTTTGCTTTCAGATGGATCAGCTTGATGCATGAATATGAGGCTCAAAAGTTCAGGATGGATGAGCTGCTGTTAAGACCAGATCACGAAAAGGATGGCCTTGCGGCAGGTGATGACTCCACTGAAATAAGCATTTTTGAGGCCCAGAAGTACTTCAACGAAAGCATCATTGATGCCCACAAGAGCAATATCTTCTCCTTTGGCCAACAATGTCAGCATCGACAACATGGAACAGCCTTCGAGATTCTCGTGGGCGGCTTCCTCATCCGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.49

Weight (kDa)

5.94

Isoelectric Point (pI)

69.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014149)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04190
fragaria_vesca FvH4_4g10470
malus_domestica MD12G1110900.v1.1
prunus_persica Prupe.7G023100_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0495011
rosa_laevigata RLG00000022656
rosa_multiflora Rmu_co8188214.1_g000001 Rmu_ssc0000058.1_g000001
rosa_roxburghii Rroxscaffold_4G00319360 Rroxscaffold_6G00390850
rosa_rugosa Rorug03G0269300
rosa_samantha Rh3BG353200 Rh3CG313700 Rh3CG350100 Rh3CG350300 Rh3DG352600
rosa_wichuraiana Rw3G027740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 260
Acc36I ACCTGC 1 cut(s) 260
AccI GTMKAC 1 cut(s) 46
AciI CCGC 2 cut(s) 266, 417
AclWI GGATC 1 cut(s) 188
AcoI YGGCCR 1 cut(s) 364
AcuI CTGAAG 1 cut(s) 35
AfaI GTAC 1 cut(s) 314
AflII CTTAAG 1 cut(s) 112
AgsI TTSAA 2 cut(s) 160, 319
AluBI AGCT 2 cut(s) 186, 229
AluI AGCT 2 cut(s) 186, 229
AlwI GGATC 1 cut(s) 188
AoxI GGCC 3 cut(s) 259, 303, 364
ApeKI GCWGC 1 cut(s) 229
Asp700I GAANNNNTTC 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 304
AsuHPI GGTGA 2 cut(s) 54, 284
BalI TGGCCA 1 cut(s) 366
BanII GRGCYC 1 cut(s) 73
BauI CACGAG 1 cut(s) 410
BbvI GCAGC 1 cut(s) 216
BccI CCATC 3 cut(s) 171, 214, 251
BfrI CTTAAG 1 cut(s) 112
BfuAI ACCTGC 1 cut(s) 260
BglI GCCNNNNNGGC 1 cut(s) 77
BisI GCNGC 3 cut(s) 230, 267, 418
BlsI GCNGC 3 cut(s) 231, 268, 419
BmcAI AGTACT 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 304
BmsI GCATC 4 cut(s) 180, 325, 336, 388
Bse3DI GCAATG 1 cut(s) 107
BseGI GGATG 4 cut(s) 225, 229, 262, 426
BseMI GCAATG 1 cut(s) 107
BseRI GAGGAG 2 cut(s) 12, 134
BseXI GCAGC 1 cut(s) 216
BshFI GGCC 3 cut(s) 261, 305, 366
BsnI GGCC 3 cut(s) 261, 305, 366
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 2 cut(s) 180, 244
BspACI CCGC 2 cut(s) 266, 417
BspANI GGCC 3 cut(s) 261, 305, 366
BspHI TCATGA 1 cut(s) 434
BspMI ACCTGC 1 cut(s) 260
BspPI GGATC 1 cut(s) 188
BspTI CTTAAG 1 cut(s) 112
BsrDI GCAATG 1 cut(s) 107
BssMI GATC 2 cut(s) 180, 244
BssSI CACGAG 1 cut(s) 410
Bst2BI CACGAG 1 cut(s) 410
BstAFI CTTAAG 1 cut(s) 112
BstDEI CTNAG 1 cut(s) 96
BstF5I GGATG 4 cut(s) 225, 229, 262, 426
BstKTI GATC 2 cut(s) 183, 247
BstMBI GATC 2 cut(s) 180, 244
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 216
BsuRI GGCC 3 cut(s) 261, 305, 366
BtsCI GGATG 4 cut(s) 225, 229, 262, 426
BtsIMutI CAGTG 1 cut(s) 282
BveI ACCTGC 1 cut(s) 260
CciI TCATGA 1 cut(s) 434
Cfr13I GGNCC 1 cut(s) 304
CseI GACGC 1 cut(s) 64
Csp6I GTAC 1 cut(s) 313
CviAII CATG 4 cut(s) 130, 194, 389, 435
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 1 cut(s) 96
DpnI GATC 2 cut(s) 182, 246
DpnII GATC 2 cut(s) 180, 244
EaeI YGGCCR 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 35
EcoT22I ATGCAT 1 cut(s) 195
EcoT38I GRGCYC 1 cut(s) 73
FaeI CATG 4 cut(s) 133, 197, 392, 438
FaiI YATR 5 cut(s) 131, 195, 201, 390, 436
FatI CATG 4 cut(s) 129, 193, 388, 434
FblI GTMKAC 1 cut(s) 46
Fnu4HI GCNGC 3 cut(s) 230, 267, 418
FokI GGATG 4 cut(s) 232, 236, 269, 413
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 3 cut(s) 230, 267, 418
GluI GCNGC 3 cut(s) 230, 267, 418
HaeIII GGCC 3 cut(s) 261, 305, 366
HgaI GACGC 1 cut(s) 64
Hin1II CATG 4 cut(s) 133, 197, 392, 438
HinfI GANTC 3 cut(s) 4, 278, 406
HphI GGTGA 2 cut(s) 54, 284
Hpy166II GTNNAC 1 cut(s) 47
Hpy188I TCNGA 2 cut(s) 54, 176
Hpy188III TCNNGA 5 cut(s) 11, 217, 248, 403, 435
Hpy8I GTNNAC 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 409
HpyCH4V TGCA 2 cut(s) 105, 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 4 cut(s) 133, 197, 392, 438
Kzo9I GATC 2 cut(s) 180, 244
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 6 cut(s) 69, 165, 202, 255, 255, 320
Lsp1109I GCAGC 1 cut(s) 216
LweI GCATC 4 cut(s) 180, 325, 336, 388
MalI GATC 2 cut(s) 182, 246
MboI GATC 2 cut(s) 180, 244
MboII GAAGA 1 cut(s) 346
MhlI GDGCHC 1 cut(s) 73
MlsI TGGCCA 1 cut(s) 366
MluNI TGGCCA 1 cut(s) 366
MlyI GAGTC 2 cut(s) 13, 272
MnlI CCTC 9 cut(s) 30, 33, 42, 49, 70, 112, 196, 295, 434
Mox20I TGGCCA 1 cut(s) 366
Mph1103I ATGCAT 1 cut(s) 195
MroXI GAANNNNTTC 1 cut(s) 314
MscI TGGCCA 1 cut(s) 366
MseI TTAA 2 cut(s) 113, 236
MslI CAYNNNNRTG 1 cut(s) 198
Msp20I TGGCCA 1 cut(s) 366
MspCI CTTAAG 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 2 cut(s) 180, 244
NlaIII CATG 4 cut(s) 133, 197, 392, 438
NsiI ATGCAT 1 cut(s) 195
PagI TCATGA 1 cut(s) 434
PaqCI CACCTGC 1 cut(s) 260
PcsI WCGNNNNNNNCGW 2 cut(s) 62, 408
PdmI GAANNNNTTC 1 cut(s) 314
PfeI GAWTC 1 cut(s) 406
PkrI GCNGC 3 cut(s) 231, 268, 419
PleI GAGTC 2 cut(s) 12, 272
PpsI GAGTC 2 cut(s) 12, 272
PspPI GGNCC 1 cut(s) 304
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
RseI CAYNNNNRTG 1 cut(s) 198
SaqAI TTAA 2 cut(s) 113, 236
SatI GCNGC 3 cut(s) 230, 267, 418
Sau3AI GATC 2 cut(s) 180, 244
Sau96I GGNCC 1 cut(s) 304
ScaI AGTACT 1 cut(s) 314
SchI GAGTC 2 cut(s) 13, 272
SduI GDGCHC 1 cut(s) 73
SetI ASST 6 cut(s) 22, 34, 113, 188, 231, 274
SfaNI GCATC 4 cut(s) 180, 325, 336, 388
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
SsiI CCGC 2 cut(s) 266, 417
SspI AATATT 1 cut(s) 163
TaqI TCGA 2 cut(s) 382, 402
TatI WGTACW 1 cut(s) 312
TauI GCSGC 2 cut(s) 269, 420
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 2 cut(s) 113, 236
Tru9I TTAA 2 cut(s) 113, 236
TscAI CASTG 1 cut(s) 289
TseI GCWGC 1 cut(s) 229
TspDTI ATGAA 2 cut(s) 210, 423
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 1 cut(s) 289
Vha464I CTTAAG 1 cut(s) 112
XcmI CCANNNNNNNNNTGG 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 314
ZrmI AGTACT 1 cut(s) 314
Zsp2I ATGCAT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.