Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000058.1

Orthogroup ID

OG0014149

Physical Location & Seq

Genomic Coordinates Forward (+)

28 .. 471

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000058.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atggaagatgatgcctccagctttaatgctattagaggtttgtatcgccggcgaagcagcttagataatgagccaatgacgacttcatcagccgagtactgctacgagcctagtgaagcaagcatagactggagtgtaaccaccgcagaggggttggaccggcccagcacatcatcggaagcagattaccatcaagatgagctggaaaagatgagcagacgacgctcgtcatccgcagggagttatgggttgttgagctgtcgatgggagaaggcggtgagcgtggggccgaacccagtgagactagtgagtagtatgcctgctggtgctagtgctggtgctgttggtgaggtgatgaagcatgtggggagtaggccacccttaccctataaaccacgctgctctcacttgtctattccttctgcaacatcattccattcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009639 GO:0009987 GO:0010017 GO:0023052 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

15.96

Weight (kDa)

6.07

Isoelectric Point (pI)

68.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04190
fragaria_vesca	FvH4_4g10470
malus_domestica	MD12G1110900.v1.1
prunus_persica	Prupe.7G023100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0495011
rosa_laevigata	RLG00000022656
rosa_multiflora	Rmu_co8188214.1_g000001 Rmu_ssc0000058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319360 Rroxscaffold_6G00390850
rosa_rugosa	Rorug03G0269300
rosa_samantha	Rh3BG353200 Rh3CG313700 Rh3CG350100 Rh3CG350300 Rh3DG352600
rosa_wichuraiana	Rw3G027740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	144, 234, 275
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	150
AhlI	ACTAGT	1 cut(s)	304
AjuI	GAANNNNNNNTTGG	2 cut(s)	67, 99
AluBI	AGCT	4 cut(s)	21, 60, 202, 258
AluI	AGCT	4 cut(s)	21, 60, 202, 258
Alw26I	GTCTC	1 cut(s)	295
AoxI	GGCC	3 cut(s)	161, 287, 374
ApeKI	GCWGC	2 cut(s)	57, 399
AspS9I	GGNCC	3 cut(s)	157, 162, 287
AsuHPI	GGTGA	3 cut(s)	289, 359, 364
AvaII	GGWCC	1 cut(s)	157
BbvI	GCAGC	2 cut(s)	69, 386
BccI	CCATC	2 cut(s)	198, 258
BcoDI	GTCTC	1 cut(s)	295
BcuI	ACTAGT	1 cut(s)	304
BfaI	CTAG	3 cut(s)	111, 305, 330
BisI	GCNGC	2 cut(s)	58, 400
BlsI	GCNGC	2 cut(s)	59, 401
BmcAI	AGTACT	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	3 cut(s)	157, 162, 287
BmiI	GGNNCC	1 cut(s)	288
BmrI	ACTGGG	1 cut(s)	290
BmuI	ACTGGG	1 cut(s)	290
BoxI	GACNNNNGTC	1 cut(s)	226
BpmI	CTGGAG	1 cut(s)	151
BsaBI	GATNNNNATC	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse118I	RCCGGY	2 cut(s)	48, 159
Bse1I	ACTGG	2 cut(s)	134, 296
Bse8I	GATNNNNATC	1 cut(s)	189
BseGI	GGATG	1 cut(s)	230
BseJI	GATNNNNATC	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseNI	ACTGG	2 cut(s)	134, 296
BseXI	GCAGC	2 cut(s)	69, 386
BseYI	CCCAGC	1 cut(s)	164
BshFI	GGCC	3 cut(s)	163, 289, 376
BsiSI	CCGG	2 cut(s)	49, 160
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	1 cut(s)	295
BsnI	GGCC	3 cut(s)	163, 289, 376
BspACI	CCGC	3 cut(s)	144, 234, 275
BspANI	GGCC	3 cut(s)	163, 289, 376
BspLI	GGNNCC	1 cut(s)	288
BsrFI	RCCGGY	2 cut(s)	48, 159
BsrI	ACTGG	2 cut(s)	134, 296
BssAI	RCCGGY	2 cut(s)	48, 159
BstC8I	GCNNGC	3 cut(s)	50, 121, 321
BstDEI	CTNAG	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	230
BstMAI	GTCTC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 222
BstNSI	RCATGY	1 cut(s)	365
BstPAI	GACNNNNGTC	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	69, 386
BsuRI	GGCC	3 cut(s)	163, 289, 376
BtsCI	GGATG	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	3 cut(s)	50, 121, 321
Cfr10I	RCCGGY	2 cut(s)	48, 159
Cfr13I	GGNCC	3 cut(s)	157, 162, 287
CseI	GACGC	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	1 cut(s)	362
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	157
FaeI	CATG	1 cut(s)	365
FaiI	YATR	6 cut(s)	125, 246, 317, 363, 390, 442
FatI	CATG	1 cut(s)	361
Fnu4HI	GCNGC	2 cut(s)	58, 400
FokI	GGATG	1 cut(s)	217
Fsp4HI	GCNGC	2 cut(s)	58, 400
FspBI	CTAG	3 cut(s)	111, 305, 330
GluI	GCNGC	2 cut(s)	58, 400
GsaI	CCCAGC	1 cut(s)	168
GsuI	CTGGAG	1 cut(s)	151
HaeIII	GGCC	3 cut(s)	163, 289, 376
HapII	CCGG	2 cut(s)	49, 160
HgaI	GACGC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	365
HpaII	CCGG	2 cut(s)	49, 160
HphI	GGTGA	3 cut(s)	289, 359, 364
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	194
Hpy99I	CGWCG	1 cut(s)	225
HpyAV	CCTTC	2 cut(s)	265, 429
HpyCH4V	TGCA	1 cut(s)	425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 222
HpyF3I	CTNAG	1 cut(s)	61
Hsp92II	CATG	1 cut(s)	365
KroI	GCCGGC	1 cut(s)	48
KroNI	GCCGGC	1 cut(s)	50
Lsp1109I	GCAGC	2 cut(s)	69, 386
MaeI	CTAG	3 cut(s)	111, 305, 330
MaeIII	GTNAC	1 cut(s)	136
MboII	GAAGA	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	4 cut(s)	25, 29, 142, 343
MreI	CGCCGGCG	1 cut(s)	48
MroNI	GCCGGC	1 cut(s)	48
MseI	TTAA	1 cut(s)	24
MslI	CAYNNNNRTG	1 cut(s)	195
MspI	CCGG	2 cut(s)	49, 160
MwoI	GCNNNNNNNGC	2 cut(s)	54, 222
NaeI	GCCGGC	1 cut(s)	50
NgoMIV	GCCGGC	1 cut(s)	48
NlaIII	CATG	1 cut(s)	365
NlaIV	GGNNCC	1 cut(s)	288
NmeAIII	GCCGAG	1 cut(s)	118
NspI	RCATGY	1 cut(s)	365
PdiI	GCCGGC	1 cut(s)	50
PkrI	GCNGC	2 cut(s)	59, 401
PshAI	GACNNNNGTC	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	3 cut(s)	157, 162, 287
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	2 cut(s)	58, 400
Sau96I	GGNCC	3 cut(s)	157, 162, 287
ScaI	AGTACT	1 cut(s)	98
SetI	ASST	6 cut(s)	23, 40, 62, 204, 260, 354
SgrAI	CRCCGGYG	1 cut(s)	48
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	195
SpeI	ACTAGT	1 cut(s)	304
SsiI	CCGC	3 cut(s)	144, 234, 275
SspMI	CTAG	3 cut(s)	111, 305, 330
TaqI	TCGA	1 cut(s)	262
TatI	WGTACW	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	303
TseI	GCWGC	2 cut(s)	57, 399
TspDTI	ATGAA	3 cut(s)	75, 371, 429
TspRI	CASTG	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	157
XceI	RCATGY	1 cut(s)	365
XspI	CTAG	3 cut(s)	111, 305, 330
ZrmI	AGTACT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.