Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014353

Physical Location & Seq

Genomic Coordinates Reverse (-)

1367911 .. 1371550

Gene Structure 3640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G04740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCGTTCTCGAGTTCCATCTTCTCTGTTACTCAGTTTTCTTCTTCGTTAGCTTCGCGTCCTTCTTCTGCAATCAGTAGGCAGACTCGTTTTCCCGCTCAAATTGCTTCTCCAGATCTATCGCCTGCTTTGTTCGATGATCGCCGGAAGTTCGTCGGAGGTGTAATGTCTCTCTTGACGAAGAGTATTAAAAACCGTGTATATGCTTCGATTAACAGCATTGATTCGGCCGCTACTCCATCGTATCCGAAATCGGAAGACGATGACGACGTTGTTCCAATGCCAATGGTTATGATAGACCAGGATGCTGACCCTGAAGCTACTATTGTACAACTCAGTTTTGGAAATCGTCTTGGGGCTCTTATTGACACAATGCGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAAGGAACTGTCTCAACTGAAGGATCCATTAAGCAGACCAAATTTTCTATAACGAAACGAGACACTGGCCGGAAAGTGGAAGATCCTGACTTGTTGGAACAAATCCGATTAACAATCATCAACAATCTCTTGAAATACCATCCGGAATGCAGTGAGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCCGAAAAGAAGATTGATGTCGATATCGCAACTCATATACATGTGAAAGAAGATGGACCAAAGAGGAGCCTGCTTGTCATAGAGACAGCGGACAGGCCAGGTCTTGTCGTAGAGATGATCAAAGTGATGGCTGATGTCAACATAGACGTGGAATCCGCAGAGATAGATACAGAGGGACTGGTTGCGAAAGACAAGTTTCACGTAAGCTACCAAGGGCAAGCTCTAAACAGATCTTTGTCACAGGTTTTGGTGAACTGTCTGCGTTACTTCCTGAGAAGGCCTGAAACTGACATTGACAGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

301

Amino Acids

33.24

Weight (kDa)

5.27

Isoelectric Point (pI)

48.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04740 AT5G04740
fragaria_vesca	FvH4_7g05550 FvH4_7g05550
malus_domestica	MD07G1063700.v1.1
prunus_persica	Prupe.2G077000_v2.0.a1
pyrus_communis	pycom07g04910
rosa_chinensis	RchiOBHm_Chr1g0332391
rosa_laevigata	RLG00000029675
rosa_multiflora	Rmu_ssc0000161.1_g000018
rosa_roxburghii	Rroxscaffold_4G00318220
rosa_rugosa	Rorug01G0100400
rosa_samantha	Rh1AG124300 Rh1BG094900 Rh1CG118400 Rh1DG129400
rosa_wichuraiana	Rw1G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	98
AccII	CGCG	1 cut(s)	58
AccIII	TCCGGA	1 cut(s)	550
AciI	CCGC	5 cut(s)	96, 231, 376, 689, 756
AclWI	GGATC	3 cut(s)	426, 439, 485
AcoI	YGGCCR	2 cut(s)	228, 475
AcsI	RAATTY	1 cut(s)	449
AcuI	CTGAAG	2 cut(s)	336, 447
AfaI	GTAC	1 cut(s)	330
AfiI	CCNNNNNNNGG	1 cut(s)	484
AflIII	ACRYGT	1 cut(s)	640
AgsI	TTSAA	1 cut(s)	541
AjiI	CACGTC	1 cut(s)	748
AjnI	CCWGG	2 cut(s)	300, 697
AluBI	AGCT	5 cut(s)	53, 320, 807, 821, 900
AluI	AGCT	5 cut(s)	53, 320, 807, 821, 900
Alw26I	GTCTC	5 cut(s)	174, 424, 462, 575, 677
AlwI	GGATC	3 cut(s)	426, 439, 485
Ama87I	CYCGRG	1 cut(s)	10
Aor13HI	TCCGGA	1 cut(s)	550
AoxI	GGCC	4 cut(s)	228, 475, 695, 878
ApoI	RAATTY	1 cut(s)	449
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	1 cut(s)	656
AsuHPI	GGTGA	2 cut(s)	590, 862
AvaI	CYCGRG	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	656
BamHI	GGATCC	1 cut(s)	431
BanII	GRGCYC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	264
BccI	CCATC	5 cut(s)	26, 247, 555, 647, 721
BciT130I	CCWGG	2 cut(s)	302, 699
BciVI	GTATCC	1 cut(s)	255
BclI	TGATCA	1 cut(s)	717
BcoDI	GTCTC	5 cut(s)	174, 424, 462, 575, 677
BfoI	RGCGCY	1 cut(s)	383
BfuI	GTATCC	1 cut(s)	255
BglII	AGATCT	2 cut(s)	115, 830
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	2 cut(s)	302, 699
Bme18I	GGWCC	1 cut(s)	656
BmeT110I	CYCGRG	1 cut(s)	10
BmgBI	CACGTC	1 cut(s)	748
BmgT120I	GGNCC	1 cut(s)	656
BmiI	GGNNCC	3 cut(s)	433, 600, 668
BmrFI	CCNGG	2 cut(s)	302, 699
BmsI	GCATC	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	96
BsaAI	YACGTR	1 cut(s)	802
BsaJI	CCNNGG	1 cut(s)	811
BsaWI	WCCGGW	1 cut(s)	550
Bsc4I	CCNNNNNNNGG	1 cut(s)	484
Bse1I	ACTGG	2 cut(s)	478, 783
Bse3DI	GCAATG	1 cut(s)	579
BseAI	TCCGGA	1 cut(s)	550
BseBI	CCWGG	2 cut(s)	302, 699
BseDI	CCNNGG	1 cut(s)	811
BseGI	GGATG	3 cut(s)	310, 406, 547
BseLI	CCNNNNNNNGG	1 cut(s)	484
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	3 cut(s)	47, 349, 863
BseNI	ACTGG	2 cut(s)	478, 783
BseRI	GAGGAG	1 cut(s)	679
BseX3I	CGGCCG	1 cut(s)	228
Bsh1236I	CGCG	1 cut(s)	58
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	4 cut(s)	230, 477, 697, 880
BsiEI	CGRYCG	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	10
BsiSI	CCGG	3 cut(s)	145, 478, 551
BslFI	GGGAC	1 cut(s)	789
BslI	CCNNNNNNNGG	1 cut(s)	484
BsmAI	GTCTC	5 cut(s)	174, 424, 462, 575, 677
BsmFI	GGGAC	1 cut(s)	789
BsmI	GAATGC	1 cut(s)	560
BsnI	GGCC	4 cut(s)	230, 477, 697, 880
BsoBI	CYCGRG	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp13I	TCCGGA	1 cut(s)	550
Bsp1407I	TGTACA	1 cut(s)	328
Bsp143I	GATC	6 cut(s)	115, 139, 431, 490, 717, 830
BspACI	CCGC	5 cut(s)	96, 231, 376, 689, 756
BspANI	GGCC	4 cut(s)	230, 477, 697, 880
BspCNI	CTCAG	3 cut(s)	46, 348, 864
BspEI	TCCGGA	1 cut(s)	550
BspFNI	CGCG	1 cut(s)	58
BspLI	GGNNCC	3 cut(s)	433, 600, 668
BspPI	GGATC	3 cut(s)	426, 439, 485
BsrBI	CCGCTC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	579
BsrGI	TGTACA	1 cut(s)	328
BsrI	ACTGG	2 cut(s)	478, 783
BssECI	CCNNGG	1 cut(s)	811
BssMI	GATC	6 cut(s)	115, 139, 431, 490, 717, 830
BssT1I	CCWWGG	1 cut(s)	811
Bst2UI	CCWGG	2 cut(s)	302, 699
Bst4CI	ACNGT	3 cut(s)	197, 418, 857
Bst6I	CTCTTC	1 cut(s)	176
BstAUI	TGTACA	1 cut(s)	328
BstBAI	YACGTR	1 cut(s)	802
BstC8I	GCNNGC	4 cut(s)	126, 378, 671, 819
BstDEI	CTNAG	3 cut(s)	33, 335, 872
BstF5I	GGATG	3 cut(s)	310, 406, 547
BstFNI	CGCG	1 cut(s)	58
BstH2I	RGCGCY	1 cut(s)	383
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	6 cut(s)	118, 142, 434, 493, 720, 833
BstMAI	GTCTC	5 cut(s)	174, 424, 462, 575, 677
BstMBI	GATC	6 cut(s)	115, 139, 431, 490, 717, 830
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	2 cut(s)	302, 699
BstNSI	RCATGY	1 cut(s)	644
BstSCI	CCNGG	2 cut(s)	300, 697
BstUI	CGCG	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	264
BstX2I	RGATCY	4 cut(s)	115, 431, 490, 830
BstYI	RGATCY	4 cut(s)	115, 431, 490, 830
BstZI	CGGCCG	1 cut(s)	228
BsuI	GTATCC	1 cut(s)	255
BsuRI	GGCC	4 cut(s)	230, 477, 697, 880
BtrI	CACGTC	1 cut(s)	748
BtsCI	GGATG	3 cut(s)	310, 406, 547
BtsI	GCAGTG	1 cut(s)	565
BtsIMutI	CAGTG	2 cut(s)	471, 565
Cac8I	GCNNGC	4 cut(s)	126, 378, 671, 819
CfoI	GCGC	1 cut(s)	382
Cfr13I	GGNCC	1 cut(s)	656
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	329
CviAII	CATG	1 cut(s)	641
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	3 cut(s)	33, 335, 872
DpnI	GATC	6 cut(s)	117, 141, 433, 492, 719, 832
DpnII	GATC	6 cut(s)	115, 139, 431, 490, 717, 830
EaeI	YGGCCR	2 cut(s)	228, 475
EagI	CGGCCG	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
EclXI	CGGCCG	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	811
Eco147I	AGGCCT	1 cut(s)	880
Eco24I	GRGCYC	1 cut(s)	361
Eco32I	GATATC	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	656
Eco52I	CGGCCG	1 cut(s)	228
Eco57I	CTGAAG	2 cut(s)	336, 447
Eco88I	CYCGRG	1 cut(s)	10
EcoRII	CCWGG	2 cut(s)	300, 697
EcoRV	GATATC	1 cut(s)	625
EcoT14I	CCWWGG	1 cut(s)	811
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	811
FaeI	CATG	1 cut(s)	644
FaiI	YATR	9 cut(s)	202, 204, 293, 458, 636, 638, 642, 680, 743
FaqI	GGGAC	1 cut(s)	789
FatI	CATG	1 cut(s)	640
FauI	CCCGC	2 cut(s)	103, 369
FbaI	TGATCA	1 cut(s)	717
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	3 cut(s)	317, 413, 534
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	1 cut(s)	231
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	1 cut(s)	231
GsuI	CTGGAG	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	383
HaeIII	GGCC	4 cut(s)	230, 477, 697, 880
HapII	CCGG	3 cut(s)	145, 478, 551
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	382
Hin1II	CATG	1 cut(s)	644
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HinfI	GANTC	3 cut(s)	85, 224, 752
HpaII	CCGG	3 cut(s)	145, 478, 551
HphI	GGTGA	2 cut(s)	590, 862
Hpy166II	GTNNAC	2 cut(s)	739, 853
Hpy188I	TCNGA	4 cut(s)	158, 249, 256, 515
Hpy188III	TCNNGA	8 cut(s)	10, 113, 175, 494, 538, 551, 602, 871
Hpy8I	GTNNAC	2 cut(s)	739, 853
Hpy99I	CGWCG	2 cut(s)	158, 272
HpyAV	CCTTC	3 cut(s)	72, 422, 870
HpyCH4III	ACNGT	3 cut(s)	197, 418, 857
HpyCH4IV	ACGT	3 cut(s)	270, 747, 801
HpyCH4V	TGCA	3 cut(s)	71, 558, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	3 cut(s)	33, 335, 872
HpySE526I	ACGT	3 cut(s)	270, 747, 801
Hsp92II	CATG	1 cut(s)	644
HspAI	GCGC	1 cut(s)	380
Kpn2I	TCCGGA	1 cut(s)	550
Ksp22I	TGATCA	1 cut(s)	717
Kzo9I	GATC	6 cut(s)	115, 139, 431, 490, 717, 830
LmnI	GCTCC	2 cut(s)	604, 666
LweI	GCATC	1 cut(s)	295
MaeII	ACGT	3 cut(s)	270, 747, 801
MaeIII	GTNAC	3 cut(s)	28, 837, 863
MalI	GATC	6 cut(s)	117, 141, 433, 492, 719, 832
MbiI	CCGCTC	1 cut(s)	98
MboI	GATC	6 cut(s)	115, 139, 431, 490, 717, 830
MboII	GAAGA	9 cut(s)	13, 33, 36, 57, 193, 269, 500, 622, 662
MflI	RGATCY	4 cut(s)	115, 431, 490, 830
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	2 cut(s)	102, 449
MlyI	GAGTC	1 cut(s)	79
MmeI	TCCRAC	2 cut(s)	136, 483
MnlI	CCTC	3 cut(s)	152, 657, 766
MroI	TCCGGA	1 cut(s)	550
MseI	TTAA	4 cut(s)	189, 213, 438, 518
MslI	CAYNNNNRTG	2 cut(s)	639, 746
MspA1I	CMGCKG	1 cut(s)	689
MspI	CCGG	3 cut(s)	145, 478, 551
MspR9I	CCNGG	2 cut(s)	302, 699
Mva1269I	GAATGC	1 cut(s)	560
MvaI	CCWGG	2 cut(s)	302, 699
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	6 cut(s)	115, 139, 431, 490, 717, 830
NlaIII	CATG	1 cut(s)	644
NlaIV	GGNNCC	3 cut(s)	433, 600, 668
NmuCI	GTSAC	1 cut(s)	837
NspI	RCATGY	1 cut(s)	644
PaeR7I	CTCGAG	1 cut(s)	10
PceI	AGGCCT	1 cut(s)	880
PciI	ACATGT	1 cut(s)	640
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PctI	GAATGC	1 cut(s)	560
PfeI	GAWTC	2 cut(s)	224, 752
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
Ppu21I	YACGTR	1 cut(s)	802
PscI	ACATGT	1 cut(s)	640
Psp6I	CCWGG	2 cut(s)	300, 697
PspGI	CCWGG	2 cut(s)	300, 697
PspN4I	GGNNCC	3 cut(s)	433, 600, 668
PspPI	GGNCC	1 cut(s)	656
PsuI	RGATCY	4 cut(s)	115, 431, 490, 830
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
RseI	CAYNNNNRTG	2 cut(s)	639, 746
SaqAI	TTAA	4 cut(s)	189, 213, 438, 518
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	6 cut(s)	115, 139, 431, 490, 717, 830
Sau96I	GGNCC	1 cut(s)	656
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	2 cut(s)	302, 699
SduI	GDGCHC	1 cut(s)	361
SfaNI	GCATC	1 cut(s)	295
Sfr274I	CTCGAG	1 cut(s)	10
SinI	GGWCC	1 cut(s)	656
SlaI	CTCGAG	1 cut(s)	10
SmiMI	CAYNNNNRTG	2 cut(s)	639, 746
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	2 cut(s)	102, 449
SseBI	AGGCCT	1 cut(s)	880
SsiI	CCGC	5 cut(s)	96, 231, 376, 689, 756
StuI	AGGCCT	1 cut(s)	880
StyD4I	CCNGG	2 cut(s)	300, 697
StyI	CCWWGG	1 cut(s)	811
TaaI	ACNGT	3 cut(s)	197, 418, 857
TaiI	ACGT	3 cut(s)	273, 750, 804
TaqI	TCGA	4 cut(s)	11, 135, 209, 621
TasI	AATT	2 cut(s)	102, 449
TatI	WGTACW	1 cut(s)	328
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	224, 752
Tru1I	TTAA	4 cut(s)	189, 213, 438, 518
Tru9I	TTAA	4 cut(s)	189, 213, 438, 518
TscAI	CASTG	2 cut(s)	478, 565
TseFI	GTSAC	1 cut(s)	837
Tsp45I	GTSAC	1 cut(s)	837
TspRI	CASTG	2 cut(s)	478, 565
VpaK11BI	GGWCC	1 cut(s)	656
XapI	RAATTY	1 cut(s)	449
XceI	RCATGY	1 cut(s)	644
XhoI	CTCGAG	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.