Rh1BG094900

protein DS12 from 2D-PAGE of leaf

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0014353
Physical Location & Seq
Forward (+)
16564960 .. 16572184
7225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG094900.1

Sequence Viewer

Length: 660 bp
ATGCGAGGCCCCCAAGCTCCTTCACTTTCCTCCCAGCGCCATTCATGCCAGCACTTTCTCCAGAAATTTGAACGTTGTGTGTGCGTCTACCGATGGTGTCAATGCAGTTGGTTCATCGTCGCCGCAGTTGTCATGATTGATCAAGATTCAGATTCTGATGCAACTATTGTGCAACTCAGCTTTGGTGATCGCCTCGGAGCTCTTATTGACACGATAAAGGCATTAAAAGATTTGGGATTGGATGTAGCAAAGGGTACTGTTACCACTGAGGGACCAGTTAAACAGACGAAGTTTCATATAACGCGGTTAGACACCGGGCGCAAAGTTGAAGATCCTGATATGTTAGAGAGAATTCGACTTACAATCATCAACAATCTTTTGAAGTATCATCCAGAATCTAGTCAGCTACTTGCAATGGGTGAAGCTTTTGGAATAAAAGCTCCGGAAAAGAAGCTTGATGTTGATATCGCAACTCATATGCAAGTGAAGCAAGATGGACCTAAGAGGAGCTTGCTTTATATAGAGACAGCAGATCGACCAGGATTGCTTGTAGAAATTATCAAAATCATTGCTGACATTAATATCGATGTGGAATCAGCTGAGATTGATACAGAAGTATGTCTTCTCTCTCTCTCTCTCTCTCTCTGCATTTTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

24.44

Weight (kDa)

5.56

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04740 AT5G04740
fragaria_vesca FvH4_7g05550 FvH4_7g05550
malus_domestica MD07G1063700.v1.1
prunus_persica Prupe.2G077000_v2.0.a1
pyrus_communis pycom07g04910
rosa_chinensis RchiOBHm_Chr1g0332391
rosa_laevigata RLG00000029675
rosa_multiflora Rmu_ssc0000161.1_g000018
rosa_roxburghii Rroxscaffold_4G00318220
rosa_rugosa Rorug01G0100400
rosa_samantha Rh1AG124300 Rh1BG094900 Rh1CG118400 Rh1DG129400
rosa_wichuraiana Rw1G010110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 87
AccII CGCG 1 cut(s) 304
AccIII TCCGGA 1 cut(s) 442
AciI CCGC 2 cut(s) 123, 304
AclI AACGTT 1 cut(s) 73
AclWI GGATC 1 cut(s) 326
AcsI RAATTY 2 cut(s) 65, 351
AfaI GTAC 1 cut(s) 256
AgsI TTSAA 3 cut(s) 71, 329, 382
AjnI CCWGG 1 cut(s) 538
AluBI AGCT 9 cut(s) 17, 180, 200, 406, 425, 440, 454, 510, 599
AluI AGCT 9 cut(s) 17, 180, 200, 406, 425, 440, 454, 510, 599
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 518
AlwI GGATC 1 cut(s) 326
AlwNI CAGNNNCTG 1 cut(s) 155
Aor13HI TCCGGA 1 cut(s) 442
AoxI GGCC 1 cut(s) 7
ApoI RAATTY 2 cut(s) 65, 351
AseI ATTAAT 1 cut(s) 579
AspLEI GCGC 2 cut(s) 39, 321
AspS9I GGNCC 3 cut(s) 8, 272, 497
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 2 cut(s) 197, 431
AvaII GGWCC 2 cut(s) 272, 497
BaeI ACNNNNGTAYC 2 cut(s) 600, 633
BanII GRGCYC 1 cut(s) 202
BbsI GAAGAC 1 cut(s) 614
Bbv12I GWGCWC 1 cut(s) 202
BccI CCATC 2 cut(s) 87, 488
BciT130I CCWGG 1 cut(s) 540
BclI TGATCA 1 cut(s) 139
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 518
BfaI CTAG 1 cut(s) 399
BfoI RGCGCY 1 cut(s) 40
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 2 cut(s) 316, 540
Bme18I GGWCC 2 cut(s) 272, 497
BmgT120I GGNCC 3 cut(s) 8, 272, 497
BmiI GGNNCC 2 cut(s) 10, 273
BmrFI CCNGG 2 cut(s) 316, 540
BmsI GCATC 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 614
BpmI CTGGAG 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 316
Bsa29I ATCGAT 1 cut(s) 585
BsaJI CCNNGG 1 cut(s) 193
BsaWI WCCGGW 1 cut(s) 442
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 2 cut(s) 420, 567
BseAI TCCGGA 1 cut(s) 442
BseBI CCWGG 1 cut(s) 540
BseCI ATCGAT 1 cut(s) 585
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 2 cut(s) 247, 388
BseMI GCAATG 2 cut(s) 420, 567
BseMII CTCAG 3 cut(s) 190, 258, 591
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 1 cut(s) 520
BseYI CCCAGC 1 cut(s) 33
Bsh1236I CGCG 1 cut(s) 304
BshFI GGCC 1 cut(s) 9
BshVI ATCGAT 1 cut(s) 585
BsiHKAI GWGCWC 1 cut(s) 202
BsiSI CCGG 2 cut(s) 315, 443
BslFI GGGAC 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 518
BsmFI GGGAC 1 cut(s) 285
BsnI GGCC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 202
Bsp13I TCCGGA 1 cut(s) 442
Bsp143I GATC 4 cut(s) 139, 187, 331, 532
BspACI CCGC 2 cut(s) 123, 304
BspANI GGCC 1 cut(s) 9
BspCNI CTCAG 3 cut(s) 189, 259, 592
BspDI ATCGAT 1 cut(s) 585
BspEI TCCGGA 1 cut(s) 442
BspFNI CGCG 1 cut(s) 304
BspHI TCATGA 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 10, 273
BspPI GGATC 1 cut(s) 326
BsrDI GCAATG 2 cut(s) 420, 567
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 4 cut(s) 139, 187, 331, 532
Bst2UI CCWGG 1 cut(s) 540
Bst4CI ACNGT 1 cut(s) 259
BstC8I GCNNGC 2 cut(s) 50, 512
BstDEI CTNAG 4 cut(s) 176, 267, 501, 600
BstF5I GGATG 2 cut(s) 247, 388
BstFNI CGCG 1 cut(s) 304
BstH2I RGCGCY 1 cut(s) 40
BstHHI GCGC 2 cut(s) 39, 321
BstKTI GATC 4 cut(s) 142, 190, 334, 535
BstMAI GTCTC 1 cut(s) 518
BstMBI GATC 4 cut(s) 139, 187, 331, 532
BstMWI GCNNNNNNNGC 2 cut(s) 45, 487
BstNI CCWGG 1 cut(s) 540
BstSCI CCNGG 2 cut(s) 314, 538
BstUI CGCG 1 cut(s) 304
BstV2I GAAGAC 1 cut(s) 614
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
Bsu15I ATCGAT 1 cut(s) 585
BsuRI GGCC 1 cut(s) 9
BsuTUI ATCGAT 1 cut(s) 585
BtsCI GGATG 2 cut(s) 247, 388
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 2 cut(s) 50, 512
CaiI CAGNNNCTG 1 cut(s) 155
CciI TCATGA 1 cut(s) 132
CfoI GCGC 2 cut(s) 39, 321
Cfr13I GGNCC 3 cut(s) 8, 272, 497
ClaI ATCGAT 1 cut(s) 585
CseI GACGC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 255
CviAII CATG 2 cut(s) 45, 133
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 4 cut(s) 176, 267, 501, 600
DpnI GATC 4 cut(s) 141, 189, 333, 534
DpnII GATC 4 cut(s) 139, 187, 331, 532
Ecl136II GAGCTC 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 202
Eco32I GATATC 1 cut(s) 466
Eco47I GGWCC 2 cut(s) 272, 497
Eco53kI GAGCTC 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 8
EcoRI GAATTC 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 538
EcoRV GATATC 1 cut(s) 466
EcoT38I GRGCYC 1 cut(s) 202
FaeI CATG 2 cut(s) 48, 136
FalI AAGNNNNNCTT 4 cut(s) 494, 526, 606, 638
FaqI GGGAC 1 cut(s) 285
FatI CATG 2 cut(s) 44, 132
FauNDI CATATG 1 cut(s) 477
FbaI TGATCA 1 cut(s) 139
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 2 cut(s) 254, 375
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 1 cut(s) 399
GlaI GCGC 2 cut(s) 38, 320
GluI GCNGC 1 cut(s) 123
GsaI CCCAGC 1 cut(s) 37
GsuI CTGGAG 1 cut(s) 44
HaeII RGCGCY 1 cut(s) 40
HaeIII GGCC 1 cut(s) 9
HapII CCGG 2 cut(s) 315, 443
HgaI GACGC 1 cut(s) 73
HhaI GCGC 2 cut(s) 39, 321
Hin1II CATG 2 cut(s) 48, 136
Hin6I GCGC 2 cut(s) 37, 319
HinP1I GCGC 2 cut(s) 37, 319
HindIII AAGCTT 2 cut(s) 423, 452
HinfI GANTC 4 cut(s) 146, 152, 395, 593
HpaII CCGG 2 cut(s) 315, 443
HphI GGTGA 2 cut(s) 197, 431
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 3 cut(s) 151, 157, 197
Hpy188III TCNNGA 6 cut(s) 61, 133, 143, 335, 392, 443
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 30
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 6 cut(s) 105, 161, 172, 413, 481, 648
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 487
HpyF3I CTNAG 4 cut(s) 176, 267, 501, 600
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 2 cut(s) 48, 136
HspAI GCGC 2 cut(s) 37, 319
Kpn2I TCCGGA 1 cut(s) 442
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 4 cut(s) 139, 187, 331, 532
LmnI GCTCC 4 cut(s) 22, 197, 445, 507
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 399
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 1 cut(s) 259
MalI GATC 4 cut(s) 141, 189, 333, 534
MboI GATC 4 cut(s) 139, 187, 331, 532
MboII GAAGA 2 cut(s) 341, 614
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 3 cut(s) 65, 351, 555
MnlI CCTC 4 cut(s) 40, 203, 262, 498
MroI TCCGGA 1 cut(s) 442
MseI TTAA 3 cut(s) 224, 279, 579
MspA1I CMGCKG 1 cut(s) 599
MspI CCGG 2 cut(s) 315, 443
MspR9I CCNGG 2 cut(s) 316, 540
MvaI CCWGG 1 cut(s) 540
MvnI CGCG 1 cut(s) 304
MwoI GCNNNNNNNGC 2 cut(s) 45, 487
NciI CCSGG 1 cut(s) 316
NdeI CATATG 1 cut(s) 477
NdeII GATC 4 cut(s) 139, 187, 331, 532
NlaIII CATG 2 cut(s) 48, 136
NlaIV GGNNCC 2 cut(s) 10, 273
PagI TCATGA 1 cut(s) 132
PfeI GAWTC 4 cut(s) 146, 152, 395, 593
PkrI GCNGC 1 cut(s) 124
PshBI ATTAAT 1 cut(s) 579
Psp124BI GAGCTC 1 cut(s) 202
Psp1406I AACGTT 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 538
PspFI CCCAGC 1 cut(s) 33
PspGI CCWGG 1 cut(s) 538
PspN4I GGNNCC 2 cut(s) 10, 273
PspPI GGNCC 3 cut(s) 8, 272, 497
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 331
PvuII CAGCTG 1 cut(s) 599
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SacI GAGCTC 1 cut(s) 202
SaqAI TTAA 3 cut(s) 224, 279, 579
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 4 cut(s) 139, 187, 331, 532
Sau96I GGNCC 3 cut(s) 8, 272, 497
ScrFI CCNGG 2 cut(s) 316, 540
SduI GDGCHC 1 cut(s) 202
SfaNI GCATC 1 cut(s) 148
SinI GGWCC 2 cut(s) 272, 497
Sse9I AATT 3 cut(s) 65, 351, 555
SsiI CCGC 2 cut(s) 123, 304
SspMI CTAG 1 cut(s) 399
SstI GAGCTC 1 cut(s) 202
StyD4I CCNGG 2 cut(s) 314, 538
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 1 cut(s) 76
TaqI TCGA 3 cut(s) 355, 535, 585
TasI AATT 3 cut(s) 65, 351, 555
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 4 cut(s) 146, 152, 395, 593
Tru1I TTAA 3 cut(s) 224, 279, 579
Tru9I TTAA 3 cut(s) 224, 279, 579
TscAI CASTG 1 cut(s) 271
TspDTI ATGAA 3 cut(s) 33, 103, 284
TspRI CASTG 1 cut(s) 271
VpaK11BI GGWCC 2 cut(s) 272, 497
VspI ATTAAT 1 cut(s) 579
XapI RAATTY 2 cut(s) 65, 351
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.