Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014353

Physical Location & Seq

Genomic Coordinates Reverse (-)

5827061 .. 5834958

Gene Structure 7898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCCTTCACCAACTCCTCCCTCTTGGCTTCCAATCTCACTCTCCGTCGCTCTGTACTTTCCGATTCCGAATTTGCCCCTCCGGACGAGGCCCCCAAGCTCCTCCTTCCCTCTCTCCATGCCAACACTTTGTCCAGAAAGTTGAACGTTGCGTGTGCCTCTAGCAATGGTGTCAATGCAGTTGGTTCCTCCTCGCCGAAGTCTGATCAAGATGCTGATTATGTTCCAATGCCAGTTGTCATGATTGATCAAGATTCAGATTCTGATGCAACTATTGTGCAACTCAGCTTTGGGGATCGCCTTGGAGCTCTCATTGACACTATAAATGCATTAAAAGATTTGGGATTGGACGTAGCAAAGGGAACAGTTGTCACTAAGGGACCGGTTAAACAGACGAAGTTTCATATAACGCGGTTAGACACTGGGCGCAAAGTTGAAGATCCTGATATGTTAGAGAGAATCCGACTTACCATCATCAACAATCTATTAAAATATCATCCAGAATCTAGTCAGCTACTTGCAATGGGTGAAGCTTTTGGAATAAAAGCTCCGGAGAATAAGCTTGATGTTGATATCACAACTCATATACATGTGAAGCAAGATGGACCTAAGAGGAGCTTGCTTTATATAGAGACTGCAGATCGACCAGGATTGCTTGTAGAAGTTATCAAAATCATTGCTGATGTTAATATCGATGTGGAATCAGCTGAGATTGATACAGAAGGTTTGGTTGCCAAAGATAAATTTCATGTCAGCTACAGAGGGGAAGCCTTAAATAGTTCCTTGTCCCAGGTGTTGGTGAACTGTCTGCGTTACTACATTCGCAGGCCAGAAACAGATATAGATAGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

285

Amino Acids

31.08

Weight (kDa)

5.2

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04740 AT5G04740
fragaria_vesca	FvH4_7g05550 FvH4_7g05550
malus_domestica	MD07G1063700.v1.1
prunus_persica	Prupe.2G077000_v2.0.a1
pyrus_communis	pycom07g04910
rosa_chinensis	RchiOBHm_Chr1g0332391
rosa_laevigata	RLG00000029675
rosa_multiflora	Rmu_ssc0000161.1_g000018
rosa_roxburghii	Rroxscaffold_4G00318220
rosa_rugosa	Rorug01G0100400
rosa_samantha	Rh1AG124300 Rh1BG094900 Rh1CG118400 Rh1DG129400
rosa_wichuraiana	Rw1G010110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	796
AccII	CGCG	1 cut(s)	412
AccIII	TCCGGA	2 cut(s)	82, 550
AciI	CCGC	1 cut(s)	412
AclI	AACGTT	1 cut(s)	147
AclWI	GGATC	2 cut(s)	303, 434
AcsI	RAATTY	2 cut(s)	71, 743
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	796
AflIII	ACRYGT	1 cut(s)	589
AgeI	ACCGGT	1 cut(s)	382
AgsI	TTSAA	2 cut(s)	145, 437
AjnI	CCWGG	2 cut(s)	646, 789
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	626
AlwI	GGATC	2 cut(s)	303, 434
AlwNI	CAGNNNCTG	1 cut(s)	263
Aor13HI	TCCGGA	2 cut(s)	82, 550
AoxI	GGCC	3 cut(s)	3, 90, 827
ApoI	RAATTY	2 cut(s)	71, 743
AsiGI	ACCGGT	1 cut(s)	382
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	3 cut(s)	91, 380, 605
AsuHPI	GGTGA	2 cut(s)	539, 811
AvaII	GGWCC	2 cut(s)	380, 605
BanII	GRGCYC	1 cut(s)	310
Bbv12I	GWGCWC	1 cut(s)	310
BccI	CCATC	2 cut(s)	479, 596
BciT130I	CCWGG	2 cut(s)	648, 791
BclI	TGATCA	2 cut(s)	205, 247
BcoDI	GTCTC	1 cut(s)	626
BfaI	CTAG	2 cut(s)	162, 507
BfmI	CTRYAG	2 cut(s)	636, 757
Bme1390I	CCNGG	2 cut(s)	648, 791
Bme18I	GGWCC	2 cut(s)	380, 605
BmgT120I	GGNCC	3 cut(s)	91, 380, 605
BmiI	GGNNCC	3 cut(s)	93, 187, 381
BmrFI	CCNGG	2 cut(s)	648, 791
BmrI	ACTGGG	1 cut(s)	432
BmsI	GCATC	2 cut(s)	202, 256
BmuI	ACTGGG	1 cut(s)	432
Bsa29I	ATCGAT	1 cut(s)	693
BsaJI	CCNNGG	2 cut(s)	301, 789
BsaWI	WCCGGW	3 cut(s)	82, 382, 550
Bsc4I	CCNNNNNNNGG	1 cut(s)	796
Bse118I	RCCGGY	1 cut(s)	382
Bse1I	ACTGG	2 cut(s)	233, 427
Bse3DI	GCAATG	3 cut(s)	172, 528, 675
BseAI	TCCGGA	2 cut(s)	82, 550
BseBI	CCWGG	2 cut(s)	648, 791
BseCI	ATCGAT	1 cut(s)	693
BseDI	CCNNGG	2 cut(s)	301, 789
BseGI	GGATG	1 cut(s)	496
BseLI	CCNNNNNNNGG	1 cut(s)	796
BseMI	GCAATG	3 cut(s)	172, 528, 675
BseMII	CTCAG	2 cut(s)	298, 699
BseNI	ACTGG	2 cut(s)	233, 427
BseRI	GAGGAG	4 cut(s)	7, 92, 181, 628
Bsh1236I	CGCG	1 cut(s)	412
BshFI	GGCC	3 cut(s)	5, 92, 829
BshTI	ACCGGT	1 cut(s)	382
BshVI	ATCGAT	1 cut(s)	693
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	3 cut(s)	83, 383, 551
BslFI	GGGAC	2 cut(s)	393, 772
BslI	CCNNNNNNNGG	1 cut(s)	796
BsmAI	GTCTC	1 cut(s)	626
BsmFI	GGGAC	2 cut(s)	393, 772
BsnI	GGCC	3 cut(s)	5, 92, 829
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp13I	TCCGGA	2 cut(s)	82, 550
Bsp143I	GATC	5 cut(s)	205, 247, 295, 439, 640
BspACI	CCGC	1 cut(s)	412
BspANI	GGCC	3 cut(s)	5, 92, 829
BspCNI	CTCAG	2 cut(s)	297, 700
BspDI	ATCGAT	1 cut(s)	693
BspEI	TCCGGA	2 cut(s)	82, 550
BspFNI	CGCG	1 cut(s)	412
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	3 cut(s)	93, 187, 381
BspMAI	CTGCAG	1 cut(s)	640
BspPI	GGATC	2 cut(s)	303, 434
BsrDI	GCAATG	3 cut(s)	172, 528, 675
BsrFI	RCCGGY	1 cut(s)	382
BsrI	ACTGG	2 cut(s)	233, 427
BssAI	RCCGGY	1 cut(s)	382
BssECI	CCNNGG	2 cut(s)	301, 789
BssMI	GATC	5 cut(s)	205, 247, 295, 439, 640
BssT1I	CCWWGG	1 cut(s)	301
Bst2UI	CCWGG	2 cut(s)	648, 791
Bst4CI	ACNGT	2 cut(s)	367, 806
BstC8I	GCNNGC	2 cut(s)	620, 827
BstDEI	CTNAG	4 cut(s)	284, 375, 609, 708
BstF5I	GGATG	1 cut(s)	496
BstFNI	CGCG	1 cut(s)	412
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	5 cut(s)	208, 250, 298, 442, 643
BstMAI	GTCTC	1 cut(s)	626
BstMBI	GATC	5 cut(s)	205, 247, 295, 439, 640
BstNI	CCWGG	2 cut(s)	648, 791
BstNSI	RCATGY	1 cut(s)	593
BstSCI	CCNGG	2 cut(s)	646, 789
BstSFI	CTRYAG	2 cut(s)	636, 757
BstUI	CGCG	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
Bsu15I	ATCGAT	1 cut(s)	693
BsuRI	GGCC	3 cut(s)	5, 92, 829
BsuTUI	ATCGAT	1 cut(s)	693
BtsCI	GGATG	1 cut(s)	496
BtsIMutI	CAGTG	1 cut(s)	420
Cac8I	GCNNGC	2 cut(s)	620, 827
CaiI	CAGNNNCTG	1 cut(s)	263
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	1 cut(s)	429
Cfr10I	RCCGGY	1 cut(s)	382
Cfr13I	GGNCC	3 cut(s)	91, 380, 605
ClaI	ATCGAT	1 cut(s)	693
Csp6I	GTAC	1 cut(s)	56
CspAI	ACCGGT	1 cut(s)	382
CviAII	CATG	4 cut(s)	119, 241, 590, 749
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	4 cut(s)	284, 375, 609, 708
DpnI	GATC	5 cut(s)	207, 249, 297, 441, 642
DpnII	GATC	5 cut(s)	205, 247, 295, 439, 640
Ecl136II	GAGCTC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	310
Eco32I	GATATC	1 cut(s)	574
Eco47I	GGWCC	2 cut(s)	380, 605
Eco53kI	GAGCTC	1 cut(s)	308
EcoICRI	GAGCTC	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	91
EcoRII	CCWGG	2 cut(s)	646, 789
EcoRV	GATATC	1 cut(s)	574
EcoT14I	CCWWGG	1 cut(s)	301
EcoT22I	ATGCAT	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	4 cut(s)	122, 244, 593, 752
FalI	AAGNNNNNCTT	2 cut(s)	602, 634
FaqI	GGGAC	2 cut(s)	393, 772
FatI	CATG	4 cut(s)	118, 240, 589, 748
FbaI	TGATCA	2 cut(s)	205, 247
FokI	GGATG	1 cut(s)	483
FriOI	GRGCYC	1 cut(s)	310
FspBI	CTAG	2 cut(s)	162, 507
GlaI	GCGC	1 cut(s)	428
HaeIII	GGCC	3 cut(s)	5, 92, 829
HapII	CCGG	3 cut(s)	83, 383, 551
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	4 cut(s)	122, 244, 593, 752
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HindIII	AAGCTT	2 cut(s)	531, 560
HinfI	GANTC	6 cut(s)	65, 254, 260, 459, 503, 701
HpaII	CCGG	3 cut(s)	83, 383, 551
HphI	GGTGA	2 cut(s)	539, 811
Hpy166II	GTNNAC	1 cut(s)	802
Hpy188I	TCNGA	6 cut(s)	64, 70, 205, 259, 265, 464
Hpy188III	TCNNGA	8 cut(s)	83, 135, 209, 241, 251, 443, 500, 551
Hpy8I	GTNNAC	1 cut(s)	802
Hpy99I	CGWCG	1 cut(s)	51
HpyAV	CCTTC	3 cut(s)	16, 116, 716
HpyCH4III	ACNGT	2 cut(s)	367, 806
HpyCH4IV	ACGT	2 cut(s)	147, 351
HpyCH4V	TGCA	6 cut(s)	179, 269, 280, 329, 521, 638
HpyF3I	CTNAG	4 cut(s)	284, 375, 609, 708
HpySE526I	ACGT	2 cut(s)	147, 351
Hsp92II	CATG	4 cut(s)	122, 244, 593, 752
HspAI	GCGC	1 cut(s)	427
Kpn2I	TCCGGA	2 cut(s)	82, 550
Ksp22I	TGATCA	2 cut(s)	205, 247
Kzo9I	GATC	5 cut(s)	205, 247, 295, 439, 640
LmnI	GCTCC	4 cut(s)	105, 305, 553, 615
LweI	GCATC	2 cut(s)	202, 256
MaeI	CTAG	2 cut(s)	162, 507
MaeII	ACGT	2 cut(s)	147, 351
MaeIII	GTNAC	3 cut(s)	370, 812, 848
MalI	GATC	5 cut(s)	207, 249, 297, 441, 642
MboI	GATC	5 cut(s)	205, 247, 295, 439, 640
MboII	GAAGA	1 cut(s)	449
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	2 cut(s)	71, 743
MmeI	TCCRAC	1 cut(s)	487
Mph1103I	ATGCAT	1 cut(s)	331
MroI	TCCGGA	2 cut(s)	82, 550
MseI	TTAA	5 cut(s)	332, 387, 488, 687, 773
MslI	CAYNNNNRTG	1 cut(s)	588
MspA1I	CMGCKG	1 cut(s)	707
MspI	CCGG	3 cut(s)	83, 383, 551
MspR9I	CCNGG	2 cut(s)	648, 791
MvaI	CCWGG	2 cut(s)	648, 791
MvnI	CGCG	1 cut(s)	412
NdeII	GATC	5 cut(s)	205, 247, 295, 439, 640
NlaIII	CATG	4 cut(s)	122, 244, 593, 752
NlaIV	GGNNCC	3 cut(s)	93, 187, 381
NmuCI	GTSAC	1 cut(s)	370
NsiI	ATGCAT	1 cut(s)	331
NspI	RCATGY	1 cut(s)	593
PagI	TCATGA	1 cut(s)	240
PciI	ACATGT	1 cut(s)	589
PfeI	GAWTC	6 cut(s)	65, 254, 260, 459, 503, 701
PflMI	CCANNNNNTGG	1 cut(s)	796
PinAI	ACCGGT	1 cut(s)	382
PscI	ACATGT	1 cut(s)	589
Psp124BI	GAGCTC	1 cut(s)	310
Psp1406I	AACGTT	1 cut(s)	147
Psp6I	CCWGG	2 cut(s)	646, 789
PspGI	CCWGG	2 cut(s)	646, 789
PspN4I	GGNNCC	3 cut(s)	93, 187, 381
PspPI	GGNCC	3 cut(s)	91, 380, 605
PstI	CTGCAG	1 cut(s)	640
PstNI	CAGNNNCTG	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	439
PvuII	CAGCTG	1 cut(s)	707
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	588
SacI	GAGCTC	1 cut(s)	310
SaqAI	TTAA	5 cut(s)	332, 387, 488, 687, 773
Sau3AI	GATC	5 cut(s)	205, 247, 295, 439, 640
Sau96I	GGNCC	3 cut(s)	91, 380, 605
ScrFI	CCNGG	2 cut(s)	648, 791
SduI	GDGCHC	1 cut(s)	310
SfaNI	GCATC	2 cut(s)	202, 256
SfcI	CTRYAG	2 cut(s)	636, 757
SinI	GGWCC	2 cut(s)	380, 605
SmiMI	CAYNNNNRTG	1 cut(s)	588
Sse9I	AATT	2 cut(s)	71, 743
SsiI	CCGC	1 cut(s)	412
SspMI	CTAG	2 cut(s)	162, 507
SstI	GAGCTC	1 cut(s)	310
StyD4I	CCNGG	2 cut(s)	646, 789
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	2 cut(s)	367, 806
TaiI	ACGT	2 cut(s)	150, 354
TaqI	TCGA	2 cut(s)	643, 693
TasI	AATT	2 cut(s)	71, 743
TatI	WGTACW	1 cut(s)	55
TfiI	GAWTC	6 cut(s)	65, 254, 260, 459, 503, 701
Tru1I	TTAA	5 cut(s)	332, 387, 488, 687, 773
Tru9I	TTAA	5 cut(s)	332, 387, 488, 687, 773
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	1 cut(s)	370
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	2 cut(s)	392, 737
TspGWI	ACGGA	1 cut(s)	35
TspRI	CASTG	1 cut(s)	427
Van91I	CCANNNNNTGG	1 cut(s)	796
VpaK11BI	GGWCC	2 cut(s)	380, 605
XapI	RAATTY	2 cut(s)	71, 743
XceI	RCATGY	1 cut(s)	593
XspI	CTAG	2 cut(s)	162, 507
Zsp2I	ATGCAT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.