RLG00000029675

protein DS12 from 2D-PAGE of leaf

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0014353
Physical Location & Seq
Reverse (-)
42765898 .. 42771531
5634 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029675

Sequence Viewer

Length: 723 bp
ATGGCCTTCACCAACTCCTCTCTCTTTGCTTCCCATCTCACTCTCCTCCGCTCTAAACTTTCCGATTCCGAATTTGCCCCTCAGCCGTGCGAGGCCCTCAAGCTCCTTCACTTTCCTCCCAACGCCATTCATGCCTGCACTTTCTCCAGAAATTTGAACGTTGTGTGTGCGTCTACCAATGGTGTCAATGCAGTTGGTTCATCGTCGCCGCGGAAGTCTGATCAAGATGCTGATTACATTCCAATGCCAGTTGTCATGATTGATCAAGATTCAGATTCTGATGCAACTATTGTGCAACTCAGCTTTGGTGATCGCCTCGGAGCTCTTATTGACACGATAAATGCATTAAAAGATTTGGGATTGGATGTAGCCAAGGGAACTGTTACCACTGAGGGACCAGTTAAACAGACGAAGTTTCATATAACGCGGTTAGACACCGGGCGCAAAGTTGAAGATCCTGATATGTTAGAGAGAATTCGACTTACCATCATCAACAATCTTTTGAAGTATCATCCAGAATCTAGTCAGCTACTTGCAATGGGTGAAGCTTTTGGAATAAAAGCTCCGGAAAAGAAGCTTGATGTTGATATCGCAACTCATATACACGTGAAGCAAGATGGACCGAAGAGGAGGTTTGCTACATATGATTGGATATGGCACTTTGTGTTACTATTTTATTTTTTTCTATTTCAATTAAAGTATTCTACTTTCACATCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

26.82

Weight (kDa)

6.23

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04740 AT5G04740
fragaria_vesca FvH4_7g05550 FvH4_7g05550
malus_domestica MD07G1063700.v1.1
prunus_persica Prupe.2G077000_v2.0.a1
pyrus_communis pycom07g04910
rosa_chinensis RchiOBHm_Chr1g0332391
rosa_laevigata RLG00000029675
rosa_multiflora Rmu_ssc0000161.1_g000018
rosa_roxburghii Rroxscaffold_4G00318220
rosa_rugosa Rorug01G0100400
rosa_samantha Rh1AG124300 Rh1BG094900 Rh1CG118400 Rh1DG129400
rosa_wichuraiana Rw1G010110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 51
AccI GTMKAC 1 cut(s) 173
AccII CGCG 2 cut(s) 211, 427
AccIII TCCGGA 1 cut(s) 565
AciI CCGC 4 cut(s) 49, 209, 211, 427
AclI AACGTT 1 cut(s) 159
AclWI GGATC 1 cut(s) 449
AcsI RAATTY 3 cut(s) 71, 151, 474
AcvI CACGTG 1 cut(s) 607
AdeI CACNNNGTG 1 cut(s) 664
AflIII ACRYGT 1 cut(s) 604
AgsI TTSAA 4 cut(s) 157, 452, 505, 692
AluBI AGCT 7 cut(s) 103, 303, 323, 529, 548, 563, 577
AluI AGCT 7 cut(s) 103, 303, 323, 529, 548, 563, 577
Alw21I GWGCWC 1 cut(s) 325
AlwI GGATC 1 cut(s) 449
AlwNI CAGNNNCTG 1 cut(s) 278
Aor13HI TCCGGA 1 cut(s) 565
AoxI GGCC 2 cut(s) 3, 93
ApoI RAATTY 3 cut(s) 71, 151, 474
AspLEI GCGC 1 cut(s) 444
AspS9I GGNCC 3 cut(s) 94, 395, 620
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 2 cut(s) 320, 554
AvaII GGWCC 2 cut(s) 395, 620
BanII GRGCYC 1 cut(s) 325
BbrPI CACGTG 1 cut(s) 607
Bbv12I GWGCWC 1 cut(s) 325
BbvCI CCTCAGC 1 cut(s) 81
BccI CCATC 3 cut(s) 42, 494, 611
BceAI ACGGC 1 cut(s) 70
BclI TGATCA 2 cut(s) 220, 262
BcnI CCSGG 1 cut(s) 439
BfaI CTAG 1 cut(s) 522
BisI GCNGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 439
Bme18I GGWCC 2 cut(s) 395, 620
BmgT120I GGNCC 3 cut(s) 94, 395, 620
BmiI GGNNCC 1 cut(s) 396
BmrFI CCNGG 1 cut(s) 439
BmsI GCATC 2 cut(s) 217, 271
BpmI CTGGAG 1 cut(s) 130
Bpu10I CCTNAGC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 439
BsaAI YACGTR 1 cut(s) 607
BsaJI CCNNGG 3 cut(s) 209, 316, 372
BsaWI WCCGGW 1 cut(s) 565
Bse1I ACTGG 2 cut(s) 248, 398
Bse3DI GCAATG 1 cut(s) 543
BseAI TCCGGA 1 cut(s) 565
BseDI CCNNGG 3 cut(s) 209, 316, 372
BseGI GGATG 2 cut(s) 370, 511
BseMI GCAATG 1 cut(s) 543
BseMII CTCAG 3 cut(s) 95, 313, 381
BseNI ACTGG 2 cut(s) 248, 398
BseRI GAGGAG 3 cut(s) 7, 35, 643
BsgI GTGCAG 1 cut(s) 121
Bsh1236I CGCG 2 cut(s) 211, 427
BshFI GGCC 2 cut(s) 5, 95
BsiHKAI GWGCWC 1 cut(s) 325
BsiSI CCGG 2 cut(s) 438, 566
BslFI GGGAC 1 cut(s) 408
BsmFI GGGAC 1 cut(s) 408
BsnI GGCC 2 cut(s) 5, 95
Bsp1286I GDGCHC 1 cut(s) 325
Bsp13I TCCGGA 1 cut(s) 565
Bsp143I GATC 4 cut(s) 220, 262, 310, 454
BspACI CCGC 4 cut(s) 49, 209, 211, 427
BspANI GGCC 2 cut(s) 5, 95
BspCNI CTCAG 3 cut(s) 94, 312, 382
BspEI TCCGGA 1 cut(s) 565
BspFNI CGCG 2 cut(s) 211, 427
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 396
BspPI GGATC 1 cut(s) 449
BsrBI CCGCTC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 543
BsrI ACTGG 2 cut(s) 248, 398
BssECI CCNNGG 3 cut(s) 209, 316, 372
BssMI GATC 4 cut(s) 220, 262, 310, 454
BssT1I CCWWGG 1 cut(s) 372
Bst4CI ACNGT 1 cut(s) 382
Bst6I CTCTTC 1 cut(s) 620
BstBAI YACGTR 1 cut(s) 607
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 3 cut(s) 81, 299, 390
BstDSI CCRYGG 1 cut(s) 209
BstF5I GGATG 2 cut(s) 370, 511
BstFNI CGCG 2 cut(s) 211, 427
BstHHI GCGC 1 cut(s) 444
BstKTI GATC 4 cut(s) 223, 265, 313, 457
BstMBI GATC 4 cut(s) 220, 262, 310, 454
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 437
BstUI CGCG 2 cut(s) 211, 427
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
BsuRI GGCC 2 cut(s) 5, 95
BtgI CCRYGG 1 cut(s) 209
BtsCI GGATG 2 cut(s) 370, 511
BtsIMutI CAGTG 1 cut(s) 387
Cac8I GCNNGC 1 cut(s) 136
CaiI CAGNNNCTG 1 cut(s) 278
CciI TCATGA 1 cut(s) 255
CfoI GCGC 1 cut(s) 444
Cfr13I GGNCC 3 cut(s) 94, 395, 620
Cfr42I CCGCGG 1 cut(s) 212
CseI GACGC 1 cut(s) 159
CviAII CATG 2 cut(s) 131, 256
DdeI CTNAG 3 cut(s) 81, 299, 390
DpnI GATC 4 cut(s) 222, 264, 312, 456
DpnII GATC 4 cut(s) 220, 262, 310, 454
DraIII CACNNNGTG 1 cut(s) 664
Eam1104I CTCTTC 1 cut(s) 620
EarI CTCTTC 1 cut(s) 620
Ecl136II GAGCTC 1 cut(s) 323
Eco130I CCWWGG 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 325
Eco32I GATATC 1 cut(s) 589
Eco47I GGWCC 2 cut(s) 395, 620
Eco53kI GAGCTC 1 cut(s) 323
Eco72I CACGTG 1 cut(s) 607
EcoICRI GAGCTC 1 cut(s) 323
EcoO109I RGGNCCY 1 cut(s) 94
EcoRI GAATTC 1 cut(s) 474
EcoRV GATATC 1 cut(s) 589
EcoT14I CCWWGG 1 cut(s) 372
EcoT22I ATGCAT 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 2 cut(s) 134, 259
FaqI GGGAC 1 cut(s) 408
FatI CATG 2 cut(s) 130, 255
FauNDI CATATG 1 cut(s) 643
FbaI TGATCA 2 cut(s) 220, 262
FblI GTMKAC 1 cut(s) 173
Fnu4HI GCNGC 1 cut(s) 209
FokI GGATG 2 cut(s) 377, 498
FriOI GRGCYC 1 cut(s) 325
Fsp4HI GCNGC 1 cut(s) 209
FspBI CTAG 1 cut(s) 522
GlaI GCGC 1 cut(s) 443
GluI GCNGC 1 cut(s) 209
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 2 cut(s) 5, 95
HapII CCGG 2 cut(s) 438, 566
HgaI GACGC 1 cut(s) 159
HhaI GCGC 1 cut(s) 444
Hin1II CATG 2 cut(s) 134, 259
Hin6I GCGC 1 cut(s) 442
HinP1I GCGC 1 cut(s) 442
HindIII AAGCTT 2 cut(s) 546, 575
HinfI GANTC 4 cut(s) 65, 269, 275, 518
HpaII CCGG 2 cut(s) 438, 566
HphI GGTGA 2 cut(s) 320, 554
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 7 cut(s) 64, 70, 220, 274, 280, 320, 718
Hpy188III TCNNGA 7 cut(s) 147, 224, 256, 266, 458, 515, 566
Hpy8I GTNNAC 1 cut(s) 174
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 2 cut(s) 16, 116
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 2 cut(s) 159, 606
HpyCH4V TGCA 6 cut(s) 138, 191, 284, 295, 344, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 3 cut(s) 81, 299, 390
HpySE526I ACGT 2 cut(s) 159, 606
Hsp92II CATG 2 cut(s) 134, 259
HspAI GCGC 1 cut(s) 442
Kpn2I TCCGGA 1 cut(s) 565
Ksp22I TGATCA 2 cut(s) 220, 262
KspI CCGCGG 1 cut(s) 212
Kzo9I GATC 4 cut(s) 220, 262, 310, 454
LmnI GCTCC 3 cut(s) 108, 320, 568
LpnPI CCDG 8 cut(s) 148, 160, 261, 411, 451, 471, 528, 579
LweI GCATC 2 cut(s) 217, 271
MaeI CTAG 1 cut(s) 522
MaeII ACGT 2 cut(s) 159, 606
MaeIII GTNAC 2 cut(s) 382, 666
MalI GATC 4 cut(s) 222, 264, 312, 456
MbiI CCGCTC 1 cut(s) 51
MboI GATC 4 cut(s) 220, 262, 310, 454
MboII GAAGA 2 cut(s) 464, 637
MflI RGATCY 1 cut(s) 454
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 4 cut(s) 71, 151, 474, 692
Mph1103I ATGCAT 1 cut(s) 346
MroI TCCGGA 1 cut(s) 565
MseI TTAA 4 cut(s) 347, 402, 695, 721
MslI CAYNNNNRTG 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 211
MspI CCGG 2 cut(s) 438, 566
MspR9I CCNGG 1 cut(s) 439
MvnI CGCG 2 cut(s) 211, 427
MwoI GCNNNNNNNGC 1 cut(s) 131
NciI CCSGG 1 cut(s) 439
NdeI CATATG 1 cut(s) 643
NdeII GATC 4 cut(s) 220, 262, 310, 454
NlaIII CATG 2 cut(s) 134, 259
NlaIV GGNNCC 1 cut(s) 396
NsiI ATGCAT 1 cut(s) 346
PagI TCATGA 1 cut(s) 255
PfeI GAWTC 4 cut(s) 65, 269, 275, 518
PkrI GCNGC 1 cut(s) 210
PmaCI CACGTG 1 cut(s) 607
PmlI CACGTG 1 cut(s) 607
Ppu21I YACGTR 1 cut(s) 607
Psp124BI GAGCTC 1 cut(s) 325
Psp1406I AACGTT 1 cut(s) 159
PspCI CACGTG 1 cut(s) 607
PspN4I GGNNCC 1 cut(s) 396
PspPI GGNCC 3 cut(s) 94, 395, 620
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 1 cut(s) 454
RseI CAYNNNNRTG 1 cut(s) 242
SacI GAGCTC 1 cut(s) 325
SacII CCGCGG 1 cut(s) 212
SaqAI TTAA 4 cut(s) 347, 402, 695, 721
SatI GCNGC 1 cut(s) 209
Sau3AI GATC 4 cut(s) 220, 262, 310, 454
Sau96I GGNCC 3 cut(s) 94, 395, 620
ScrFI CCNGG 1 cut(s) 439
SduI GDGCHC 1 cut(s) 325
SfaNI GCATC 2 cut(s) 217, 271
Sfr303I CCGCGG 1 cut(s) 212
SgrBI CCGCGG 1 cut(s) 212
SinI GGWCC 2 cut(s) 395, 620
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 4 cut(s) 71, 151, 474, 692
SsiI CCGC 4 cut(s) 49, 209, 211, 427
SspMI CTAG 1 cut(s) 522
SstI GAGCTC 1 cut(s) 325
StyD4I CCNGG 1 cut(s) 437
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 2 cut(s) 162, 609
TaqI TCGA 1 cut(s) 478
TaqII GACCGA 1 cut(s) 637
TasI AATT 4 cut(s) 71, 151, 474, 692
TauI GCSGC 1 cut(s) 211
TfiI GAWTC 4 cut(s) 65, 269, 275, 518
Tru1I TTAA 4 cut(s) 347, 402, 695, 721
Tru9I TTAA 4 cut(s) 347, 402, 695, 721
TscAI CASTG 1 cut(s) 394
TspDTI ATGAA 3 cut(s) 119, 189, 407
TspRI CASTG 1 cut(s) 394
VpaK11BI GGWCC 2 cut(s) 395, 620
XapI RAATTY 3 cut(s) 71, 151, 474
XmiI GTMKAC 1 cut(s) 173
XspI CTAG 1 cut(s) 522
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.