AT5G04760
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011264
Physical Location & Seq
Reverse (-)
1373530 .. 1374787
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G04760.1

Sequence Viewer

Length: 648 bp
ATGGCGTCAAGTCAGTGGACGAGGTCGGAGGATAAGATGTTTGAGCAAGCTTTGGTTCTTTTTCCTGAAGGATCTCCTAATCGGTGGGAGAGAATCGCTGATCAGCTTCATAAATCTGCTGGTGAAGTTAGGGAGCATTACGAGGTCTTGGTTCATGATGTTTTCGAGATTGATTCTGGTCGAGTTGATGTCCCTGATTACATGGATGACTCGGCGGCTGCGGCGGCGGGTTGGGATTCCGCTGGTCAGATCTCTTTTGGGTCTAAACATGGCGAGAGTGAACGCAAAAGAGGAACTCCTTGGACAGAGAACGAACACAAATTGTTTCTGATCGGATTAAAGAGATATGGTAAGGGAGATTGGAGGAGTATCTCGAGAAACGTTGTGGTGACGAGGACACCGACGCAAGTCGCGAGTCACGCTCAGAAGTATTTTCTGAGACAGAACTCGGTGAAGAAGGAGAGGAAAAGGTCGAGCATCCATGATATAACTACGGTTGATGCTACTTTGGCTATGCCTGGGTCTAACATGGACTGGACTGGCCAACACGGGAGTCCTGTTCAGGCGCCGCAGCAGCAACAGATTATGTCTGAGTTCGGTCAGCAATTGAATCCTGGTCATTTCGAGGATTTTGGGTTTCGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

215

Amino Acids

24.41

Weight (kDa)

6.31

Isoelectric Point (pI)

53.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding_2 PF23082 5 - 40 9e-08 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 100 - 145 7.1e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04760
fragaria_vesca FvH4_7g06630 FvH4_7g06630 FvH4_7g06630
malus_domestica MD02G1259300.v1.1 MD07G1061400.v1.1
prunus_persica Prupe.2G070600_v2.0.a1
pyrus_communis pycom02g22070 pycom07g04700
rosa_chinensis RchiOBHm_Chr1g0335311 RchiOBHm_Chr1g0338881
rosa_laevigata RLG00000029381
rosa_multiflora Rmu_sc0003404.1_g000004
rosa_roxburghii Rroxscaffold_4G00316000
rosa_rugosa Rorug01G0122400
rosa_samantha Rh1AG143500 Rh1BG112500 Rh1CG135100 Rh1DG149200
rosa_wichuraiana Rw0G009230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 565
AccII CGCG 1 cut(s) 413
AciI CCGC 6 cut(s) 215, 221, 224, 227, 240, 569
AclI AACGTT 1 cut(s) 381
AclWI GGATC 1 cut(s) 79
AcoI YGGCCR 1 cut(s) 541
AcuI CTGAAG 1 cut(s) 87
AcyI GRCGYC 2 cut(s) 5, 566
AgsI TTSAA 1 cut(s) 610
AjnI CCWGG 2 cut(s) 517, 613
AluBI AGCT 2 cut(s) 50, 106
AluI AGCT 2 cut(s) 50, 106
Alw26I GTCTC 1 cut(s) 433
AlwI GGATC 1 cut(s) 79
Ama87I CYCGRG 1 cut(s) 373
AoxI GGCC 1 cut(s) 541
ApeKI GCWGC 3 cut(s) 218, 571, 574
AspLEI GCGC 1 cut(s) 568
AsuHPI GGTGA 3 cut(s) 134, 400, 463
AvaI CYCGRG 1 cut(s) 373
BalI TGGCCA 1 cut(s) 543
BanI GGYRCC 1 cut(s) 565
BbvI GCAGC 3 cut(s) 205, 583, 586
BciT130I CCWGG 2 cut(s) 519, 615
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 433
BfoI RGCGCY 1 cut(s) 569
BglII AGATCT 1 cut(s) 249
BisI GCNGC 7 cut(s) 216, 219, 222, 225, 569, 572, 575
BlsI GCNGC 7 cut(s) 217, 220, 223, 226, 570, 573, 576
Bme1390I CCNGG 2 cut(s) 519, 615
BmeT110I CYCGRG 1 cut(s) 373
BmiI GGNNCC 1 cut(s) 567
BmrFI CCNGG 2 cut(s) 519, 615
BmsI GCATC 2 cut(s) 486, 490
BoxI GACNNNNGTC 1 cut(s) 407
BplI GAGNNNNNCTC 2 cut(s) 406, 438
BsaHI GRCGYC 2 cut(s) 5, 566
BsaJI CCNNGG 2 cut(s) 299, 518
Bse1I ACTGG 2 cut(s) 539, 544
BseBI CCWGG 2 cut(s) 519, 615
BseDI CCNNGG 2 cut(s) 299, 518
BseGI GGATG 3 cut(s) 211, 477, 648
BseMII CTCAG 3 cut(s) 428, 437, 582
BseNI ACTGG 2 cut(s) 539, 544
BseRI GAGGAG 1 cut(s) 379
BseXI GCAGC 3 cut(s) 205, 583, 586
Bsh1236I CGCG 1 cut(s) 413
BshFI GGCC 1 cut(s) 543
BshNI GGYRCC 1 cut(s) 565
BsiHKCI CYCGRG 1 cut(s) 373
BslFI GGGAC 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 433
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 1 cut(s) 543
BsoBI CYCGRG 1 cut(s) 373
Bsp143I GATC 4 cut(s) 71, 100, 249, 330
Bsp68I TCGCGA 1 cut(s) 413
BspACI CCGC 6 cut(s) 215, 221, 224, 227, 240, 569
BspANI GGCC 1 cut(s) 543
BspCNI CTCAG 3 cut(s) 429, 436, 583
BspFNI CGCG 1 cut(s) 413
BspHI TCATGA 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 567
BspPI GGATC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 565
BsrI ACTGG 2 cut(s) 539, 544
BssECI CCNNGG 2 cut(s) 299, 518
BssMI GATC 4 cut(s) 71, 100, 249, 330
BssNI GRCGYC 2 cut(s) 5, 566
BssT1I CCWWGG 1 cut(s) 299
Bst2UI CCWGG 2 cut(s) 519, 615
Bst4CI ACNGT 1 cut(s) 496
BstACI GRCGYC 2 cut(s) 5, 566
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 3 cut(s) 423, 437, 591
BstF5I GGATG 3 cut(s) 211, 477, 648
BstFNI CGCG 1 cut(s) 413
BstH2I RGCGCY 1 cut(s) 569
BstHHI GCGC 1 cut(s) 568
BstKTI GATC 4 cut(s) 74, 103, 252, 333
BstMAI GTCTC 1 cut(s) 433
BstMBI GATC 4 cut(s) 71, 100, 249, 330
BstMWI GCNNNNNNNGC 5 cut(s) 221, 224, 419, 509, 574
BstNI CCWGG 2 cut(s) 519, 615
BstPAI GACNNNNGTC 1 cut(s) 407
BstSCI CCNGG 2 cut(s) 517, 613
BstUI CGCG 1 cut(s) 413
BstV1I GCAGC 3 cut(s) 205, 583, 586
BstX2I RGATCY 2 cut(s) 71, 249
BstYI RGATCY 2 cut(s) 71, 249
BsuRI GGCC 1 cut(s) 543
BtsCI GGATG 3 cut(s) 211, 477, 648
BtsIMutI CAGTG 1 cut(s) 20
BtuMI TCGCGA 1 cut(s) 413
Cac8I GCNNGC 1 cut(s) 48
CciI TCATGA 1 cut(s) 154
CfoI GCGC 1 cut(s) 568
CseI GACGC 1 cut(s) 412
CviAII CATG 5 cut(s) 155, 202, 269, 482, 529
CviJI RGCY 5 cut(s) 50, 106, 218, 512, 543
CviKI_1 RGCY 5 cut(s) 50, 106, 218, 512, 543
DdeI CTNAG 3 cut(s) 423, 437, 591
DinI GGCGCC 1 cut(s) 567
DpnI GATC 4 cut(s) 73, 102, 251, 332
DpnII GATC 4 cut(s) 71, 100, 249, 330
EaeI YGGCCR 1 cut(s) 541
Eco130I CCWWGG 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 87
Eco88I CYCGRG 1 cut(s) 373
EcoRII CCWGG 2 cut(s) 517, 613
EcoT14I CCWWGG 1 cut(s) 299
EgeI GGCGCC 1 cut(s) 567
EheI GGCGCC 1 cut(s) 567
ErhI CCWWGG 1 cut(s) 299
FaeI CATG 5 cut(s) 158, 205, 272, 485, 532
FaqI GGGAC 1 cut(s) 176
FatI CATG 5 cut(s) 154, 201, 268, 481, 528
FauI CCCGC 1 cut(s) 220
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 7 cut(s) 216, 219, 222, 225, 569, 572, 575
FokI GGATG 2 cut(s) 218, 464
Fsp4HI GCNGC 7 cut(s) 216, 219, 222, 225, 569, 572, 575
GlaI GCGC 1 cut(s) 567
GluI GCNGC 7 cut(s) 216, 219, 222, 225, 569, 572, 575
HaeII RGCGCY 1 cut(s) 569
HaeIII GGCC 1 cut(s) 543
HgaI GACGC 1 cut(s) 412
HhaI GCGC 1 cut(s) 568
Hin1I GRCGYC 2 cut(s) 5, 566
Hin1II CATG 5 cut(s) 158, 205, 272, 485, 532
Hin6I GCGC 1 cut(s) 566
HinP1I GCGC 1 cut(s) 566
HindIII AAGCTT 1 cut(s) 48
HinfI GANTC 7 cut(s) 93, 173, 209, 236, 415, 553, 610
HphI GGTGA 3 cut(s) 134, 400, 463
Hpy166II GTNNAC 2 cut(s) 18, 281
Hpy188I TCNGA 8 cut(s) 28, 249, 330, 335, 426, 438, 592, 642
Hpy188III TCNNGA 6 cut(s) 65, 155, 166, 373, 375, 412
Hpy8I GTNNAC 2 cut(s) 18, 281
Hpy99I CGWCG 1 cut(s) 406
HpyAV CCTTC 2 cut(s) 62, 451
HpyCH4III ACNGT 1 cut(s) 496
HpyCH4IV ACGT 1 cut(s) 381
HpyF10VI GCNNNNNNNGC 5 cut(s) 221, 224, 419, 509, 574
HpyF3I CTNAG 3 cut(s) 423, 437, 591
HpySE526I ACGT 1 cut(s) 381
Hsp92I GRCGYC 2 cut(s) 5, 566
Hsp92II CATG 5 cut(s) 158, 205, 272, 485, 532
HspAI GCGC 1 cut(s) 566
KasI GGCGCC 1 cut(s) 565
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 4 cut(s) 71, 100, 249, 330
LmnI GCTCC 1 cut(s) 133
Lsp1109I GCAGC 3 cut(s) 205, 583, 586
LweI GCATC 2 cut(s) 486, 490
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 2 cut(s) 388, 416
MalI GATC 4 cut(s) 73, 102, 251, 332
MboI GATC 4 cut(s) 71, 100, 249, 330
MboII GAAGA 1 cut(s) 466
MfeI CAATTG 1 cut(s) 605
MflI RGATCY 2 cut(s) 71, 249
MlsI TGGCCA 1 cut(s) 543
MluCI AATT 2 cut(s) 320, 605
MluNI TGGCCA 1 cut(s) 543
Mly113I GGCGCC 1 cut(s) 566
MlyI GAGTC 3 cut(s) 203, 424, 562
MmeI TCCRAC 1 cut(s) 6
MnlI CCTC 8 cut(s) 15, 22, 136, 284, 357, 387, 456, 619
Mox20I TGGCCA 1 cut(s) 543
MscI TGGCCA 1 cut(s) 543
MseI TTAA 1 cut(s) 338
Msp20I TGGCCA 1 cut(s) 543
MspA1I CMGCKG 1 cut(s) 242
MspR9I CCNGG 2 cut(s) 519, 615
MunI CAATTG 1 cut(s) 605
MvaI CCWGG 2 cut(s) 519, 615
MvnI CGCG 1 cut(s) 413
MwoI GCNNNNNNNGC 5 cut(s) 221, 224, 419, 509, 574
NarI GGCGCC 1 cut(s) 566
NdeII GATC 4 cut(s) 71, 100, 249, 330
NlaIII CATG 5 cut(s) 158, 205, 272, 485, 532
NlaIV GGNNCC 1 cut(s) 567
NmeAIII GCCGAG 1 cut(s) 191
NmuCI GTSAC 2 cut(s) 388, 416
NruI TCGCGA 1 cut(s) 413
PaeR7I CTCGAG 1 cut(s) 373
PagI TCATGA 1 cut(s) 154
PcsI WCGNNNNNNNCGW 2 cut(s) 398, 410
PfeI GAWTC 4 cut(s) 93, 173, 236, 610
PflFI GACNNNGTC 1 cut(s) 22
PkrI GCNGC 7 cut(s) 217, 220, 223, 226, 570, 573, 576
PleI GAGTC 3 cut(s) 203, 423, 561
PluTI GGCGCC 1 cut(s) 569
PpsI GAGTC 3 cut(s) 203, 423, 561
PshAI GACNNNNGTC 1 cut(s) 407
Psp1406I AACGTT 1 cut(s) 381
Psp6I CCWGG 2 cut(s) 517, 613
PspGI CCWGG 2 cut(s) 517, 613
PspN4I GGNNCC 1 cut(s) 567
PsuI RGATCY 2 cut(s) 71, 249
PsyI GACNNNGTC 1 cut(s) 22
RruI TCGCGA 1 cut(s) 413
SaqAI TTAA 1 cut(s) 338
SatI GCNGC 7 cut(s) 216, 219, 222, 225, 569, 572, 575
Sau3AI GATC 4 cut(s) 71, 100, 249, 330
SchI GAGTC 3 cut(s) 203, 424, 562
ScrFI CCNGG 2 cut(s) 519, 615
SetI ASST 6 cut(s) 26, 52, 108, 147, 384, 473
SfaNI GCATC 2 cut(s) 486, 490
SfoI GGCGCC 1 cut(s) 567
Sfr274I CTCGAG 1 cut(s) 373
SlaI CTCGAG 1 cut(s) 373
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
Sse9I AATT 2 cut(s) 320, 605
SsiI CCGC 6 cut(s) 215, 221, 224, 227, 240, 569
SspDI GGCGCC 1 cut(s) 565
StyD4I CCNGG 2 cut(s) 517, 613
StyI CCWWGG 1 cut(s) 299
TaaI ACNGT 1 cut(s) 496
TaiI ACGT 1 cut(s) 384
TaqI TCGA 5 cut(s) 165, 181, 374, 473, 624
TaqII GACCGA 1 cut(s) 587
TasI AATT 2 cut(s) 320, 605
TauI GCSGC 4 cut(s) 218, 224, 227, 571
TfiI GAWTC 4 cut(s) 93, 173, 236, 610
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TscAI CASTG 1 cut(s) 20
TseFI GTSAC 2 cut(s) 388, 416
TseI GCWGC 3 cut(s) 218, 571, 574
Tsp45I GTSAC 2 cut(s) 388, 416
TspDTI ATGAA 2 cut(s) 98, 143
TspRI CASTG 1 cut(s) 20
Tth111I GACNNNGTC 1 cut(s) 22
XhoI CTCGAG 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.