pycom02g22070
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0011264
Physical Location & Seq
Forward (+)
20218386 .. 20220638
2253 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g22070.2

Sequence Viewer

Length: 801 bp
ATGTTATCCATCGTAAAACCCACAAACTCTCCAAATCTCCCACCAAACCCAAATTACGCGAAATATCCAAGAAACCAAGACAAAACAGAACTCAACCCAAACCCGCAAATGTTTCAAGAAACGGCGCCGTGTTGGTCGAGCGTGGTTCAGTCGGCGGCGTCGACTCCGTGGACTCGGCTTGAGGACAAGGTGTTTGAGCAGGCGCTGGTCAGGTTCTCGGAGGACTTGCCCGATCGGTGGGAGAGGATCGCCGGAGAGTTGCCGGGCAAGACTCCCAAGGAGGTGTTGGAGCACTACGAGGACTTGGTGCACGATGTCTTGGAAATTGATTCCGGCCGGGTCAATTTGCCGAGTTATGCTGATGAGTCTATGGTCGGCTGGGAGGACACGGCCAGTCAGATCACTTTTGGGTCCAACCGCGAGACTGAGAGGAAGAAGGGAACGCCTTGGACTGAAGAAGAACACAAGTTATTTCTAATTGGACTAAAAAAGTTTGGTAAGGGCGACTGGAGGAGCATTTCAAGGAATGTGGTTGTGACAAGAACACCAACCCAAGTAGCAAGCCACGCCCAGAAGTATTTCCTTCGTCAAACCTCAATGAAAAAGGAAAGGAAAAGATCAAGCATTCACGACATAACCACTGTAGAGAGCAACTCAGTATCTGTGCCTGCTGATCGCAACTGGATTCCTCCACCTGCAGTTCCGGCTCATCAGTCTCCATTGCAACATTTGACCCAACAGAGTCATTTGCCTGATCAGGGGGATTTGTCGGGGTACCAAGATTTTGGCTATCCGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

267

Amino Acids

30.29

Weight (kDa)

6.08

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04760
fragaria_vesca FvH4_7g06630 FvH4_7g06630 FvH4_7g06630
malus_domestica MD02G1259300.v1.1 MD07G1061400.v1.1
prunus_persica Prupe.2G070600_v2.0.a1
pyrus_communis pycom02g22070 pycom07g04700
rosa_chinensis RchiOBHm_Chr1g0335311 RchiOBHm_Chr1g0338881
rosa_laevigata RLG00000029381
rosa_multiflora Rmu_sc0003404.1_g000004
rosa_roxburghii Rroxscaffold_4G00316000
rosa_rugosa Rorug01G0122400
rosa_samantha Rh1AG143500 Rh1BG112500 Rh1CG135100 Rh1DG149200
rosa_wichuraiana Rw0G009230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 703
Acc36I ACCTGC 1 cut(s) 703
Acc65I GGTACC 1 cut(s) 774
AccB1I GGYRCC 2 cut(s) 124, 774
AccI GTMKAC 1 cut(s) 161
AccII CGCG 2 cut(s) 59, 420
AciI CCGC 3 cut(s) 104, 155, 418
AclWI GGATC 1 cut(s) 254
AcoI YGGCCR 2 cut(s) 334, 390
AcuI CTGAAG 1 cut(s) 474
AcyI GRCGYC 2 cut(s) 125, 158
AfaI GTAC 1 cut(s) 776
AfiI CCNNNNNNNGG 2 cut(s) 237, 758
AgsI TTSAA 2 cut(s) 116, 522
Alw21I GWGCWC 2 cut(s) 294, 312
Alw26I GTCTC 2 cut(s) 416, 720
Alw44I GTGCAC 1 cut(s) 308
AlwI GGATC 1 cut(s) 254
AlwNI CAGNNNCTG 2 cut(s) 205, 662
AoxI GGCC 2 cut(s) 334, 390
ApaLI GTGCAC 1 cut(s) 308
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
Asp700I GAANNNNTTC 1 cut(s) 578
Asp718I GGTACC 1 cut(s) 774
AspLEI GCGC 2 cut(s) 127, 205
AspS9I GGNCC 1 cut(s) 411
AsuC2I CCSGG 2 cut(s) 264, 338
AvaII GGWCC 1 cut(s) 411
BaeGI GKGCMC 1 cut(s) 312
BanI GGYRCC 2 cut(s) 124, 774
Bbv12I GWGCWC 2 cut(s) 294, 312
BccI CCATC 1 cut(s) 17
BceAI ACGGC 3 cut(s) 112, 138, 405
BclI TGATCA 1 cut(s) 754
BcnI CCSGG 2 cut(s) 264, 338
BcoDI GTCTC 2 cut(s) 416, 720
BfmI CTRYAG 2 cut(s) 642, 696
BfoI RGCGCY 2 cut(s) 128, 206
BfuAI ACCTGC 1 cut(s) 703
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 2 cut(s) 264, 338
Bme18I GGWCC 1 cut(s) 411
BmgT120I GGNCC 1 cut(s) 411
BmiI GGNNCC 3 cut(s) 126, 412, 776
BmrFI CCNGG 2 cut(s) 264, 338
BplI GAGNNNNNCTC 2 cut(s) 638, 670
BpmI CTGGAG 1 cut(s) 529
BpuEI CTTGAG 1 cut(s) 200
BpuMI CCSGG 2 cut(s) 264, 338
BsaHI GRCGYC 2 cut(s) 125, 158
BsaJI CCNNGG 3 cut(s) 167, 276, 446
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 2 cut(s) 237, 758
Bse1I ACTGG 3 cut(s) 393, 512, 686
Bse3DI GCAATG 1 cut(s) 719
BseDI CCNNGG 3 cut(s) 167, 276, 446
BseLI CCNNNNNNNGG 2 cut(s) 237, 758
BseMI GCAATG 1 cut(s) 719
BseMII CTCAG 2 cut(s) 417, 669
BseNI ACTGG 3 cut(s) 393, 512, 686
BseRI GAGGAG 1 cut(s) 526
BseSI GKGCMC 1 cut(s) 312
BseX3I CGGCCG 1 cut(s) 334
BseYI CCCAGC 1 cut(s) 378
Bsh1236I CGCG 2 cut(s) 59, 420
Bsh1285I CGRYCG 2 cut(s) 235, 337
BshFI GGCC 2 cut(s) 336, 392
BshNI GGYRCC 2 cut(s) 124, 774
BsiEI CGRYCG 2 cut(s) 235, 337
BsiHKAI GWGCWC 2 cut(s) 294, 312
BsiSI CCGG 5 cut(s) 252, 263, 333, 337, 704
BslI CCNNNNNNNGG 2 cut(s) 237, 758
BsmAI GTCTC 2 cut(s) 416, 720
BsmI GAATGC 1 cut(s) 624
BsnI GGCC 2 cut(s) 336, 392
Bsp1286I GDGCHC 2 cut(s) 294, 312
Bsp143I GATC 6 cut(s) 232, 246, 399, 617, 673, 754
BspACI CCGC 3 cut(s) 104, 155, 418
BspANI GGCC 2 cut(s) 336, 392
BspCNI CTCAG 2 cut(s) 418, 668
BspFNI CGCG 2 cut(s) 59, 420
BspLI GGNNCC 3 cut(s) 126, 412, 776
BspMAI CTGCAG 1 cut(s) 700
BspMI ACCTGC 1 cut(s) 703
BspPI GGATC 1 cut(s) 254
BspT107I GGYRCC 2 cut(s) 124, 774
BsrDI GCAATG 1 cut(s) 719
BsrI ACTGG 3 cut(s) 393, 512, 686
BssECI CCNNGG 3 cut(s) 167, 276, 446
BssMI GATC 6 cut(s) 232, 246, 399, 617, 673, 754
BssNI GRCGYC 2 cut(s) 125, 158
BssT1I CCWWGG 2 cut(s) 276, 446
Bst4CI ACNGT 1 cut(s) 643
BstACI GRCGYC 2 cut(s) 125, 158
BstC8I GCNNGC 3 cut(s) 201, 562, 669
BstDEI CTNAG 2 cut(s) 426, 655
BstDSI CCRYGG 1 cut(s) 167
BstFNI CGCG 2 cut(s) 59, 420
BstH2I RGCGCY 2 cut(s) 128, 206
BstHHI GCGC 2 cut(s) 127, 205
BstKTI GATC 6 cut(s) 235, 249, 402, 620, 676, 757
BstMAI GTCTC 2 cut(s) 416, 720
BstMBI GATC 6 cut(s) 232, 246, 399, 617, 673, 754
BstMCI CGRYCG 2 cut(s) 235, 337
BstMWI GCNNNNNNNGC 2 cut(s) 566, 704
BstSCI CCNGG 2 cut(s) 262, 336
BstSFI CTRYAG 2 cut(s) 642, 696
BstSLI GKGCMC 1 cut(s) 312
BstUI CGCG 2 cut(s) 59, 420
BstXI CCANNNNNNTGG 1 cut(s) 785
BstZI CGGCCG 1 cut(s) 334
BsuRI GGCC 2 cut(s) 336, 392
BtgI CCRYGG 1 cut(s) 167
BtsIMutI CAGTG 1 cut(s) 639
BveI ACCTGC 1 cut(s) 703
Cac8I GCNNGC 3 cut(s) 201, 562, 669
CaiI CAGNNNCTG 2 cut(s) 205, 662
CfoI GCGC 2 cut(s) 127, 205
Cfr13I GGNCC 1 cut(s) 411
CseI GACGC 1 cut(s) 147
Csp6I GTAC 1 cut(s) 775
CspCI CAANNNNNGTGG 2 cut(s) 510, 545
CviJI RGCY 7 cut(s) 178, 336, 378, 392, 564, 707, 789
CviKI_1 RGCY 7 cut(s) 178, 336, 378, 392, 564, 707, 789
CviQI GTAC 1 cut(s) 775
DdeI CTNAG 2 cut(s) 426, 655
DinI GGCGCC 1 cut(s) 126
DpnI GATC 6 cut(s) 234, 248, 401, 619, 675, 756
DpnII GATC 6 cut(s) 232, 246, 399, 617, 673, 754
EaeI YGGCCR 2 cut(s) 334, 390
EagI CGGCCG 1 cut(s) 334
EclXI CGGCCG 1 cut(s) 334
Eco130I CCWWGG 2 cut(s) 276, 446
Eco47I GGWCC 1 cut(s) 411
Eco52I CGGCCG 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 474
EcoT14I CCWWGG 2 cut(s) 276, 446
EgeI GGCGCC 1 cut(s) 126
EheI GGCGCC 1 cut(s) 126
ErhI CCWWGG 2 cut(s) 276, 446
FaiI YATR 3 cut(s) 357, 371, 635
FauI CCCGC 1 cut(s) 111
FbaI TGATCA 1 cut(s) 754
FblI GTMKAC 1 cut(s) 161
Fnu4HI GCNGC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 156
GlaI GCGC 2 cut(s) 126, 204
GluI GCNGC 1 cut(s) 156
GsaI CCCAGC 1 cut(s) 382
GsuI CTGGAG 1 cut(s) 529
HaeII RGCGCY 2 cut(s) 128, 206
HaeIII GGCC 2 cut(s) 336, 392
HapII CCGG 5 cut(s) 252, 263, 333, 337, 704
HgaI GACGC 1 cut(s) 147
HhaI GCGC 2 cut(s) 127, 205
Hin1I GRCGYC 2 cut(s) 125, 158
Hin6I GCGC 2 cut(s) 125, 203
HinP1I GCGC 2 cut(s) 125, 203
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HinfI GANTC 7 cut(s) 163, 172, 271, 329, 365, 685, 742
HpaII CCGG 5 cut(s) 252, 263, 333, 337, 704
Hpy166II GTNNAC 3 cut(s) 162, 171, 310
Hpy188I TCNGA 3 cut(s) 220, 399, 795
Hpy188III TCNNGA 2 cut(s) 116, 629
Hpy8I GTNNAC 3 cut(s) 162, 171, 310
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 2 cut(s) 430, 593
HpyCH4III ACNGT 1 cut(s) 643
HpyCH4V TGCA 3 cut(s) 310, 698, 724
HpyF10VI GCNNNNNNNGC 2 cut(s) 566, 704
HpyF3I CTNAG 2 cut(s) 426, 655
Hsp92I GRCGYC 2 cut(s) 125, 158
HspAI GCGC 2 cut(s) 125, 203
KasI GGCGCC 1 cut(s) 124
KpnI GGTACC 1 cut(s) 778
Ksp22I TGATCA 1 cut(s) 754
Kzo9I GATC 6 cut(s) 232, 246, 399, 617, 673, 754
LmnI GCTCC 2 cut(s) 289, 513
MaeIII GTNAC 1 cut(s) 535
MalI GATC 6 cut(s) 234, 248, 401, 619, 675, 756
MboI GATC 6 cut(s) 232, 246, 399, 617, 673, 754
MboII GAAGA 3 cut(s) 445, 467, 470
MhlI GDGCHC 2 cut(s) 294, 312
MluCI AATT 4 cut(s) 52, 324, 343, 477
Mly113I GGCGCC 1 cut(s) 125
MlyI GAGTC 5 cut(s) 157, 166, 265, 374, 751
MmeI TCCRAC 2 cut(s) 267, 438
MroXI GAANNNNTTC 1 cut(s) 578
MspI CCGG 5 cut(s) 252, 263, 333, 337, 704
MspR9I CCNGG 2 cut(s) 264, 338
Mva1269I GAATGC 1 cut(s) 624
MvnI CGCG 2 cut(s) 59, 420
MwoI GCNNNNNNNGC 2 cut(s) 566, 704
NarI GGCGCC 1 cut(s) 125
NciI CCSGG 2 cut(s) 264, 338
NdeII GATC 6 cut(s) 232, 246, 399, 617, 673, 754
NlaIV GGNNCC 3 cut(s) 126, 412, 776
NmeAIII GCCGAG 2 cut(s) 154, 375
NmuCI GTSAC 1 cut(s) 535
PaqCI CACCTGC 1 cut(s) 703
PcsI WCGNNNNNNNCGW 1 cut(s) 158
PctI GAATGC 1 cut(s) 624
PdmI GAANNNNTTC 1 cut(s) 578
PfeI GAWTC 2 cut(s) 329, 685
PkrI GCNGC 1 cut(s) 157
Ple19I CGATCG 1 cut(s) 235
PleI GAGTC 5 cut(s) 157, 166, 265, 373, 750
PluTI GGCGCC 1 cut(s) 128
PpsI GAGTC 5 cut(s) 157, 166, 265, 373, 750
PspFI CCCAGC 1 cut(s) 378
PspN4I GGNNCC 3 cut(s) 126, 412, 776
PspPI GGNCC 1 cut(s) 411
PstI CTGCAG 1 cut(s) 700
PstNI CAGNNNCTG 2 cut(s) 205, 662
PvuI CGATCG 1 cut(s) 235
RsaI GTAC 1 cut(s) 776
RsaNI GTAC 1 cut(s) 775
SalI GTCGAC 1 cut(s) 160
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 6 cut(s) 232, 246, 399, 617, 673, 754
Sau96I GGNCC 1 cut(s) 411
SchI GAGTC 5 cut(s) 157, 166, 265, 374, 751
ScrFI CCNGG 2 cut(s) 264, 338
SduI GDGCHC 2 cut(s) 294, 312
SetI ASST 5 cut(s) 192, 215, 285, 596, 697
SfcI CTRYAG 2 cut(s) 642, 696
SfoI GGCGCC 1 cut(s) 126
SinI GGWCC 1 cut(s) 411
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 4 cut(s) 52, 324, 343, 477
SsiI CCGC 3 cut(s) 104, 155, 418
SspDI GGCGCC 1 cut(s) 124
StyD4I CCNGG 2 cut(s) 262, 336
StyI CCWWGG 2 cut(s) 276, 446
TaaI ACNGT 1 cut(s) 643
TaqI TCGA 2 cut(s) 137, 161
TasI AATT 4 cut(s) 52, 324, 343, 477
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 2 cut(s) 329, 685
TscAI CASTG 1 cut(s) 646
TseFI GTSAC 1 cut(s) 535
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 1 cut(s) 614
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 1 cut(s) 646
VneI GTGCAC 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 411
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 161
XmnI GAANNNNTTC 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.