Rorug01G0122400
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0011264
Physical Location & Seq
Forward (+)
21178230 .. 21178646
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0122400.1

Sequence Viewer

Length: 363 bp
ATGTCCGGTAACACCCAGGCATACCTCACTCTTAACAGCTTTGAGGCAGGTGGTGACGGAGGAGGCCCATCCAAATGTGACGGCAAGTATCACAATAACAACACTCCAGTTGTTGCATTATCCACCGGATGGTACAGCGGTGGATCAAGGTGCCTTAACAACATCAGAATTAATGGTAATGGGCGTAGCGTGGTGGCCATGGTGGTGGATGAGTGTGACTCTACTGAGGGATGTGATGCAGACCATGATTATCAGCCTCCTTGTCCCAACAACATTGTTGATGCCTCCAAGGCTGTCTGGAAAGCCTTAGGTGTATCTGAGGACAACTGGGGTGGCTTGGATATCACATGGTCTGACGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

120

Amino Acids

12.63

Weight (kDa)

4.35

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 2 - 120 1.9e-45 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04760
fragaria_vesca FvH4_7g06630 FvH4_7g06630 FvH4_7g06630
malus_domestica MD02G1259300.v1.1 MD07G1061400.v1.1
prunus_persica Prupe.2G070600_v2.0.a1
pyrus_communis pycom02g22070 pycom07g04700
rosa_chinensis RchiOBHm_Chr1g0335311 RchiOBHm_Chr1g0338881
rosa_laevigata RLG00000029381
rosa_multiflora Rmu_sc0003404.1_g000004
rosa_roxburghii Rroxscaffold_4G00316000
rosa_rugosa Rorug01G0122400
rosa_samantha Rh1AG143500 Rh1BG112500 Rh1CG135100 Rh1DG149200
rosa_wichuraiana Rw0G009230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 38
Acc36I ACCTGC 1 cut(s) 38
AccB1I GGYRCC 1 cut(s) 150
AccB7I CCANNNNNTGG 1 cut(s) 129
AciI CCGC 1 cut(s) 138
AclWI GGATC 1 cut(s) 151
AcoI YGGCCR 1 cut(s) 195
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 129
AjnI CCWGG 1 cut(s) 15
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
AlwI GGATC 1 cut(s) 151
AoxI GGCC 2 cut(s) 64, 195
AseI ATTAAT 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 65
AxyI CCTNAGG 1 cut(s) 307
BaeI ACNNNNGTAYC 2 cut(s) 124, 157
BalI TGGCCA 1 cut(s) 197
BanI GGYRCC 1 cut(s) 150
BccI CCATC 2 cut(s) 76, 123
BceAI ACGGC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 17
BfuAI ACCTGC 1 cut(s) 38
BglI GCCNNNNNGGC 1 cut(s) 290
Bme1390I CCNGG 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 152
BmrFI CCNGG 1 cut(s) 17
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 2 cut(s) 226, 271
BmuI ACTGGG 1 cut(s) 337
BplI GAGNNNNNCTC 2 cut(s) 203, 235
BpmI CTGGAG 1 cut(s) 90
BsaJI CCNNGG 3 cut(s) 15, 198, 288
BsaWI WCCGGW 2 cut(s) 5, 125
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse1I ACTGG 2 cut(s) 107, 332
Bse21I CCTNAGG 1 cut(s) 307
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 3 cut(s) 15, 198, 288
BseGI GGATG 4 cut(s) 68, 134, 214, 236
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMII CTCAG 2 cut(s) 216, 309
BseNI ACTGG 2 cut(s) 107, 332
BseRI GAGGAG 1 cut(s) 75
BshFI GGCC 2 cut(s) 66, 197
BshNI GGYRCC 1 cut(s) 150
BsiSI CCGG 2 cut(s) 6, 126
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 249
BsnI GGCC 2 cut(s) 66, 197
Bsp143I GATC 1 cut(s) 143
Bsp19I CCATGG 1 cut(s) 198
BspACI CCGC 1 cut(s) 138
BspANI GGCC 2 cut(s) 66, 197
BspCNI CTCAG 2 cut(s) 217, 310
BspLI GGNNCC 1 cut(s) 152
BspMI ACCTGC 1 cut(s) 38
BspPI GGATC 1 cut(s) 151
BspT107I GGYRCC 1 cut(s) 150
BsrI ACTGG 2 cut(s) 107, 332
BssECI CCNNGG 3 cut(s) 15, 198, 288
BssMI GATC 1 cut(s) 143
BssT1I CCWWGG 2 cut(s) 198, 288
Bst2UI CCWGG 1 cut(s) 17
BstDEI CTNAG 4 cut(s) 225, 307, 318, 360
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 4 cut(s) 68, 134, 214, 236
BstKTI GATC 1 cut(s) 146
BstMBI GATC 1 cut(s) 143
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNI CCWGG 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 15
BstXI CCANNNNNNTGG 1 cut(s) 205
Bsu36I CCTNAGG 1 cut(s) 307
BsuRI GGCC 2 cut(s) 66, 197
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 4 cut(s) 68, 134, 214, 236
BveI ACCTGC 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 133
CspCI CAANNNNNGTGG 2 cut(s) 313, 348
CviAII CATG 3 cut(s) 199, 245, 348
CviJI RGCY 7 cut(s) 39, 66, 197, 256, 293, 305, 336
CviKI_1 RGCY 7 cut(s) 39, 66, 197, 256, 293, 305, 336
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 4 cut(s) 225, 307, 318, 360
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 195
Eco130I CCWWGG 2 cut(s) 198, 288
Eco32I GATATC 1 cut(s) 343
Eco81I CCTNAGG 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 15
EcoRV GATATC 1 cut(s) 343
EcoT14I CCWWGG 2 cut(s) 198, 288
ErhI CCWWGG 2 cut(s) 198, 288
FaeI CATG 3 cut(s) 202, 248, 351
FaiI YATR 4 cut(s) 22, 200, 246, 349
FaqI GGGAC 1 cut(s) 249
FatI CATG 3 cut(s) 198, 244, 347
FokI GGATG 4 cut(s) 55, 141, 221, 243
GsuI CTGGAG 1 cut(s) 90
HaeIII GGCC 2 cut(s) 66, 197
HapII CCGG 2 cut(s) 6, 126
Hin1II CATG 3 cut(s) 202, 248, 351
HinfI GANTC 1 cut(s) 218
HpaII CCGG 2 cut(s) 6, 126
HphI GGTGA 1 cut(s) 65
Hpy188I TCNGA 3 cut(s) 167, 319, 355
Hpy188III TCNNGA 1 cut(s) 298
HpyCH4V TGCA 2 cut(s) 116, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 4 cut(s) 225, 307, 318, 360
Hsp92II CATG 3 cut(s) 202, 248, 351
Kzo9I GATC 1 cut(s) 143
LpnPI CCDG 8 cut(s) 2, 19, 29, 33, 120, 139, 283, 313
LweI GCATC 2 cut(s) 226, 271
MaeIII GTNAC 4 cut(s) 8, 53, 77, 215
MalI GATC 1 cut(s) 145
MboI GATC 1 cut(s) 143
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 1 cut(s) 168
MluNI TGGCCA 1 cut(s) 197
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 8 cut(s) 35, 37, 53, 56, 220, 267, 295, 313
Mox20I TGGCCA 1 cut(s) 197
MscI TGGCCA 1 cut(s) 197
MseI TTAA 3 cut(s) 33, 156, 171
MslI CAYNNNNRTG 2 cut(s) 73, 203
Msp20I TGGCCA 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 138
MspI CCGG 2 cut(s) 6, 126
MspR9I CCNGG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 290
NcoI CCATGG 1 cut(s) 198
NdeII GATC 1 cut(s) 143
NlaIII CATG 3 cut(s) 202, 248, 351
NlaIV GGNNCC 1 cut(s) 152
NmuCI GTSAC 3 cut(s) 53, 77, 215
PaqCI CACCTGC 1 cut(s) 38
PflMI CCANNNNNTGG 1 cut(s) 129
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PshBI ATTAAT 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 152
PspPI GGNCC 1 cut(s) 65
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 2 cut(s) 73, 203
SaqAI TTAA 3 cut(s) 33, 156, 171
Sau3AI GATC 1 cut(s) 143
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 17
SetI ASST 5 cut(s) 27, 41, 52, 152, 313
SfaNI GCATC 2 cut(s) 226, 271
SmiMI CAYNNNNRTG 2 cut(s) 73, 203
Sse9I AATT 1 cut(s) 168
SsiI CCGC 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 15
StyI CCWWGG 2 cut(s) 198, 288
TasI AATT 1 cut(s) 168
Tru1I TTAA 3 cut(s) 33, 156, 171
Tru9I TTAA 3 cut(s) 33, 156, 171
TseFI GTSAC 3 cut(s) 53, 77, 215
Tsp45I GTSAC 3 cut(s) 53, 77, 215
TspGWI ACGGA 1 cut(s) 72
Van91I CCANNNNNTGG 1 cut(s) 129
VspI ATTAAT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.