FvH4_7g06630
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011264
Physical Location & Seq
Forward (+)
6626530 .. 6629209
2680 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g06630.t3

Sequence Viewer

Length: 672 bp
ATGTTCCAGGAAGCGCCGCCGTGTTGGTCGTCGTCGGCTCGGTGGACTCGAGCCGAGGACAAGCTGTTCGAGCAGGCGCTGGTGAGCTTCTCCGAGGACTTGCCGGATCGCTGGGAGCGGATCGCCGAGATGGTTCCGGGCAAGACTGCCGAGGAGGTTTTGGAGCACTACGAGACTCTCGTGCATGATGTCGTCGAAATTGACTCGGGCCGAGTCGAGTTACCGAGTTACGCTGATGACTCGGCGGCGGCTGGGGTCGGGTGGGACTCGGCGAGTCAGATCTCTTTTGATGGTTGCAAGGCTAATAATACTAATAACAACGCCGCCAGTGAGGCGGCGGAGAGGAAGAAGGGAAAGCCATGGACTGAAATTGAACACAAATTGTTTCTGGTAGGACTAAAGCAATTTGGTAAGGGTGATTGGAGAAGCATTTCAAGAAATGTAGTTGTGACGAGAACACCCACACAAGTGGCTAGTCATGCACAAAAATATTTTCTTCGCCAAAGCTCAGGTAAAAAGGAAAGGAAAAGATCGAGCATTCACGACATAACCTCAGTAGATACAAACTCGGTGCCTGCGCCCGCTGAACGCAAGTGGATTCCTTCACCTCCACCTCCACCTGGTGATCAAGGTGGTTCATTTGGGTTTCAAGATTTTGGTTTCCCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

224

Amino Acids

24.79

Weight (kDa)

5.79

Isoelectric Point (pI)

55.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 60 4.6e-08 Myb-like DNA-binding domain
Myb_DNA-binding_2 PF23082 14 - 60 1.7e-06 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 119 - 165 1.3e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04760
fragaria_vesca FvH4_7g06630 FvH4_7g06630 FvH4_7g06630
malus_domestica MD02G1259300.v1.1 MD07G1061400.v1.1
prunus_persica Prupe.2G070600_v2.0.a1
pyrus_communis pycom02g22070 pycom07g04700
rosa_chinensis RchiOBHm_Chr1g0335311 RchiOBHm_Chr1g0338881
rosa_laevigata RLG00000029381
rosa_multiflora Rmu_sc0003404.1_g000004
rosa_roxburghii Rroxscaffold_4G00316000
rosa_rugosa Rorug01G0122400
rosa_samantha Rh1AG143500 Rh1BG112500 Rh1CG135100 Rh1DG149200
rosa_wichuraiana Rw0G009230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 571
AccBSI CCGCTC 1 cut(s) 118
AciI CCGC 8 cut(s) 17, 118, 245, 248, 324, 335, 338, 582
AclWI GGATC 2 cut(s) 114, 128
AdeI CACNNNGTG 1 cut(s) 623
AfiI CCNNNNNNNGG 1 cut(s) 620
AgsI TTSAA 3 cut(s) 374, 435, 650
AjnI CCWGG 2 cut(s) 6, 619
AleI CACNNNNGTG 1 cut(s) 467
AloI GAACNNNNNNTCC 2 cut(s) 50, 82
AluBI AGCT 3 cut(s) 64, 87, 507
AluI AGCT 3 cut(s) 64, 87, 507
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 2 cut(s) 114, 128
AlwNI CAGNNNCTG 1 cut(s) 79
Ama87I CYCGRG 2 cut(s) 48, 205
AoxI GGCC 1 cut(s) 208
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
Asp700I GAANNNNTTC 1 cut(s) 430
AspLEI GCGC 3 cut(s) 16, 79, 580
AspS9I GGNCC 1 cut(s) 208
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 4 cut(s) 94, 428, 597, 635
AvaI CYCGRG 2 cut(s) 48, 205
BanI GGYRCC 1 cut(s) 571
BauI CACGAG 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 168
BccI CCATC 2 cut(s) 124, 284
BceAI ACGGC 1 cut(s) 4
BciT130I CCWGG 2 cut(s) 8, 621
BclI TGATCA 1 cut(s) 625
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 1 cut(s) 474
BfoI RGCGCY 2 cut(s) 17, 80
BglI GCCNNNNNGGC 1 cut(s) 332
BglII AGATCT 1 cut(s) 279
BisI GCNGC 5 cut(s) 17, 246, 249, 324, 336
BlsI GCNGC 5 cut(s) 18, 247, 250, 325, 337
Bme1390I CCNGG 3 cut(s) 8, 138, 621
BmeT110I CYCGRG 2 cut(s) 48, 205
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 2 cut(s) 135, 573
BmrFI CCNGG 3 cut(s) 8, 138, 621
Bpu10I CCTNAGC 1 cut(s) 508
BpuMI CCSGG 1 cut(s) 138
BsaJI CCNNGG 4 cut(s) 54, 93, 150, 359
Bsc4I CCNNNNNNNGG 1 cut(s) 620
Bse1I ACTGG 1 cut(s) 327
BseBI CCWGG 2 cut(s) 8, 621
BseDI CCNNGG 4 cut(s) 54, 93, 150, 359
BseLI CCNNNNNNNGG 1 cut(s) 620
BseMII CTCAG 2 cut(s) 522, 567
BseNI ACTGG 1 cut(s) 327
BseRI GAGGAG 1 cut(s) 167
BseYI CCCAGC 2 cut(s) 111, 251
BshFI GGCC 1 cut(s) 210
BshNI GGYRCC 1 cut(s) 571
BsiHKAI GWGCWC 1 cut(s) 168
BsiHKCI CYCGRG 2 cut(s) 48, 205
BsiSI CCGG 2 cut(s) 104, 137
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 620
BsmAI GTCTC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 278
BsmI GAATGC 1 cut(s) 537
BsnI GGCC 1 cut(s) 210
BsoBI CYCGRG 2 cut(s) 48, 205
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 5 cut(s) 106, 120, 279, 530, 625
Bsp19I CCATGG 1 cut(s) 359
BspACI CCGC 8 cut(s) 17, 118, 245, 248, 324, 335, 338, 582
BspANI GGCC 1 cut(s) 210
BspCNI CTCAG 2 cut(s) 521, 566
BspLI GGNNCC 2 cut(s) 135, 573
BspPI GGATC 2 cut(s) 114, 128
BspT107I GGYRCC 1 cut(s) 571
BsrBI CCGCTC 1 cut(s) 118
BsrI ACTGG 1 cut(s) 327
BssECI CCNNGG 4 cut(s) 54, 93, 150, 359
BssMI GATC 5 cut(s) 106, 120, 279, 530, 625
BssSI CACGAG 1 cut(s) 179
BssT1I CCWWGG 1 cut(s) 359
Bst2BI CACGAG 1 cut(s) 179
Bst2UI CCWGG 2 cut(s) 8, 621
BstC8I GCNNGC 3 cut(s) 75, 576, 582
BstDEI CTNAG 2 cut(s) 508, 553
BstDSI CCRYGG 1 cut(s) 359
BstH2I RGCGCY 2 cut(s) 17, 80
BstHHI GCGC 3 cut(s) 16, 79, 580
BstKTI GATC 5 cut(s) 109, 123, 282, 533, 628
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 5 cut(s) 106, 120, 279, 530, 625
BstMWI GCNNNNNNNGC 3 cut(s) 70, 332, 479
BstNI CCWGG 2 cut(s) 8, 621
BstSCI CCNGG 3 cut(s) 6, 136, 619
BstX2I RGATCY 1 cut(s) 279
BstXI CCANNNNNNTGG 1 cut(s) 469
BstYI RGATCY 1 cut(s) 279
BsuRI GGCC 1 cut(s) 210
BtgI CCRYGG 1 cut(s) 359
BtsIMutI CAGTG 1 cut(s) 334
Cac8I GCNNGC 3 cut(s) 75, 576, 582
CaiI CAGNNNCTG 1 cut(s) 79
CfoI GCGC 3 cut(s) 16, 79, 580
Cfr13I GGNCC 1 cut(s) 208
CsiI ACCWGGT 1 cut(s) 619
CviAII CATG 3 cut(s) 185, 360, 479
DdeI CTNAG 2 cut(s) 508, 553
DpnI GATC 5 cut(s) 108, 122, 281, 532, 627
DpnII GATC 5 cut(s) 106, 120, 279, 530, 625
DraIII CACNNNGTG 1 cut(s) 623
EciI GGCGGA 1 cut(s) 353
Eco130I CCWWGG 1 cut(s) 359
Eco88I CYCGRG 2 cut(s) 48, 205
EcoRII CCWGG 2 cut(s) 6, 619
EcoT14I CCWWGG 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 3 cut(s) 188, 363, 482
FaiI YATR 4 cut(s) 186, 361, 480, 548
FaqI GGGAC 1 cut(s) 278
FatI CATG 3 cut(s) 184, 359, 478
FauI CCCGC 1 cut(s) 589
FbaI TGATCA 1 cut(s) 625
Fnu4HI GCNGC 5 cut(s) 17, 246, 249, 324, 336
Fsp4HI GCNGC 5 cut(s) 17, 246, 249, 324, 336
FspBI CTAG 1 cut(s) 474
GlaI GCGC 3 cut(s) 15, 78, 579
GluI GCNGC 5 cut(s) 17, 246, 249, 324, 336
GsaI CCCAGC 2 cut(s) 115, 255
HaeII RGCGCY 2 cut(s) 17, 80
HaeIII GGCC 1 cut(s) 210
HapII CCGG 2 cut(s) 104, 137
HhaI GCGC 3 cut(s) 16, 79, 580
Hin1II CATG 3 cut(s) 188, 363, 482
Hin6I GCGC 3 cut(s) 14, 77, 578
HinP1I GCGC 3 cut(s) 14, 77, 578
HinfI GANTC 8 cut(s) 46, 175, 203, 213, 239, 266, 274, 598
HpaII CCGG 2 cut(s) 104, 137
HphI GGTGA 4 cut(s) 94, 428, 597, 635
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 2 cut(s) 94, 279
Hpy188III TCNNGA 3 cut(s) 435, 542, 650
Hpy8I GTNNAC 1 cut(s) 45
Hpy99I CGWCG 3 cut(s) 34, 37, 197
HpyAV CCTTC 2 cut(s) 343, 612
HpyCH4V TGCA 3 cut(s) 184, 297, 482
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 332, 479
HpyF3I CTNAG 2 cut(s) 508, 553
Hsp92II CATG 3 cut(s) 188, 363, 482
HspAI GCGC 3 cut(s) 14, 77, 578
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 5 cut(s) 106, 120, 279, 530, 625
LmnI GCTCC 2 cut(s) 115, 163
MabI ACCWGGT 1 cut(s) 619
MaeI CTAG 1 cut(s) 474
MaeIII GTNAC 3 cut(s) 219, 227, 448
MalI GATC 5 cut(s) 108, 122, 281, 532, 627
MbiI CCGCTC 1 cut(s) 118
MboI GATC 5 cut(s) 106, 120, 279, 530, 625
MboII GAAGA 2 cut(s) 358, 488
MflI RGATCY 1 cut(s) 279
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 4 cut(s) 198, 369, 380, 404
MlyI GAGTC 7 cut(s) 40, 169, 197, 222, 233, 260, 283
MnlI CCTC 9 cut(s) 49, 88, 145, 148, 325, 336, 562, 618, 624
MroXI GAANNNNTTC 1 cut(s) 430
MslI CAYNNNNRTG 1 cut(s) 467
MspA1I CMGCKG 1 cut(s) 584
MspI CCGG 2 cut(s) 104, 137
MspR9I CCNGG 3 cut(s) 8, 138, 621
Mva1269I GAATGC 1 cut(s) 537
MvaI CCWGG 2 cut(s) 8, 621
MwoI GCNNNNNNNGC 3 cut(s) 70, 332, 479
NciI CCSGG 1 cut(s) 138
NcoI CCATGG 1 cut(s) 359
NdeII GATC 5 cut(s) 106, 120, 279, 530, 625
NlaIII CATG 3 cut(s) 188, 363, 482
NlaIV GGNNCC 2 cut(s) 135, 573
NmeAIII GCCGAG 6 cut(s) 79, 151, 175, 221, 236, 248
NmuCI GTSAC 1 cut(s) 448
OliI CACNNNNGTG 1 cut(s) 467
PaeR7I CTCGAG 1 cut(s) 48
PcsI WCGNNNNNNNCGW 2 cut(s) 46, 177
PctI GAATGC 1 cut(s) 537
PdmI GAANNNNTTC 1 cut(s) 430
PfeI GAWTC 1 cut(s) 598
PfoI TCCNGGA 1 cut(s) 6
PkrI GCNGC 5 cut(s) 18, 247, 250, 325, 337
PleI GAGTC 7 cut(s) 40, 169, 197, 221, 233, 260, 282
PpsI GAGTC 7 cut(s) 40, 169, 197, 221, 233, 260, 282
Psp6I CCWGG 2 cut(s) 6, 619
PspFI CCCAGC 2 cut(s) 111, 251
PspGI CCWGG 2 cut(s) 6, 619
PspN4I GGNNCC 2 cut(s) 135, 573
PspPI GGNCC 1 cut(s) 208
PspXI VCTCGAGB 1 cut(s) 48
PstNI CAGNNNCTG 1 cut(s) 79
PsuI RGATCY 1 cut(s) 279
RseI CAYNNNNRTG 1 cut(s) 467
SatI GCNGC 5 cut(s) 17, 246, 249, 324, 336
Sau3AI GATC 5 cut(s) 106, 120, 279, 530, 625
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 7 cut(s) 40, 169, 197, 222, 233, 260, 283
ScrFI CCNGG 3 cut(s) 8, 138, 621
SduI GDGCHC 1 cut(s) 168
SexAI ACCWGGT 1 cut(s) 619
Sfr274I CTCGAG 1 cut(s) 48
SlaI CTCGAG 1 cut(s) 48
SmiMI CAYNNNNRTG 1 cut(s) 467
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
Sse9I AATT 4 cut(s) 198, 369, 380, 404
SsiI CCGC 8 cut(s) 17, 118, 245, 248, 324, 335, 338, 582
SspI AATATT 1 cut(s) 491
SspMI CTAG 1 cut(s) 474
StyD4I CCNGG 3 cut(s) 6, 136, 619
StyI CCWWGG 1 cut(s) 359
TaqI TCGA 5 cut(s) 49, 69, 195, 216, 533
TasI AATT 4 cut(s) 198, 369, 380, 404
TauI GCSGC 5 cut(s) 19, 248, 251, 326, 338
TfiI GAWTC 1 cut(s) 598
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 1 cut(s) 448
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 1 cut(s) 627
TspRI CASTG 1 cut(s) 334
XhoI CTCGAG 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 430
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.