Rh1BG112500
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011264
Physical Location & Seq
Forward (+)
19188169 .. 19189538
1370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG112500.1

Sequence Viewer

Length: 693 bp
ATGTTCCAAGAGGCGGCGCCGCCGTGTTGGCCGGCGGGGGTGAGTCAGTCGACGTCGTCGTCGGCGCGGTGGACTCGACCGGAGGACAAGCTGTTCGAGCAGGCGCTGGTGAGGTTCTCCGAGGACTTGCCGGATCGGTGGGAGCGGATCGCCGAGATGGTGCCGGGGAAGAGCGCCGAGGAGGTTCTGGAGCACTATGAGACTCTGGTGCATGATGTTGTGGAGATTGACTCCGGCCGGGTCGAGTTGCCGAGTTACGCTGATGACTCGGTGGTCGGGTGGGACACGTCTAGTCAGATCTCTTTTGATGGTTGCAAGAATAACAATAATAACGGCGGCGGCGGTGAGGCGGCCGAGAGGAAGAAGGGAAAGCCGTGGACTGAAATTGAACACAAATTGTTTCTGGTAGGACTAAAGCAATTTGGCAAGGGTGATTGGAGAAGCATTTCAAGAAATGTAGTTGTGACGAGAACACCCACACAAGTGGCTAGTCATGCTCAAAAATATTTCCTTCGCCAAAGCTCTGGGAAAAAGGAAAGGAAAAGATCAAGCATTCATGACATAACCTCAGTAGAGACAAACTCGGTGCCTACGCCTGCTGAACGCAAGTGGATTCCTCCACCTCCACCTCCACCTCCACCTGGTGATCAAGGTGGTTCATTTGGGTTTCCAGATTTTGGTTTTCCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

230

Amino Acids

25.58

Weight (kDa)

6.0

Isoelectric Point (pI)

58.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 23 - 69 3.3e-07 Myb-like DNA-binding domain
Myb_DNA-binding_2 PF23082 23 - 69 9.1e-07 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 124 - 170 1.4e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04760
fragaria_vesca FvH4_7g06630 FvH4_7g06630 FvH4_7g06630
malus_domestica MD02G1259300.v1.1 MD07G1061400.v1.1
prunus_persica Prupe.2G070600_v2.0.a1
pyrus_communis pycom02g22070 pycom07g04700
rosa_chinensis RchiOBHm_Chr1g0335311 RchiOBHm_Chr1g0338881
rosa_laevigata RLG00000029381
rosa_multiflora Rmu_sc0003404.1_g000004
rosa_roxburghii Rroxscaffold_4G00316000
rosa_rugosa Rorug01G0122400
rosa_samantha Rh1AG143500 Rh1BG112500 Rh1CG135100 Rh1DG149200
rosa_wichuraiana Rw0G009230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 58, 272
AatII GACGTC 1 cut(s) 56
AccB1I GGYRCC 3 cut(s) 16, 160, 586
AccB7I CCANNNNNTGG 1 cut(s) 677
AccBSI CCGCTC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 50
AccII CGCG 1 cut(s) 67
AciI CCGC 9 cut(s) 14, 20, 35, 67, 145, 336, 339, 342, 350
AclWI GGATC 2 cut(s) 141, 155
AcoI YGGCCR 3 cut(s) 29, 235, 351
AcyI GRCGYC 2 cut(s) 17, 53
AdeI CACNNNGTG 1 cut(s) 644
AfiI CCNNNNNNNGG 3 cut(s) 13, 641, 677
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 2 cut(s) 389, 450
AjiI CACGTC 1 cut(s) 288
AjnI CCWGG 1 cut(s) 640
AleI CACNNNNGTG 1 cut(s) 482
AloI GAACNNNNNNTCC 2 cut(s) 77, 109
AluBI AGCT 2 cut(s) 91, 522
AluI AGCT 2 cut(s) 91, 522
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 2 cut(s) 194, 569
AlwI GGATC 2 cut(s) 141, 155
AlwNI CAGNNNCTG 1 cut(s) 106
AoxI GGCC 3 cut(s) 29, 235, 351
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
Asp700I GAANNNNTTC 1 cut(s) 445
AspLEI GCGC 4 cut(s) 19, 67, 106, 176
AsuC2I CCSGG 2 cut(s) 165, 239
AsuHPI GGTGA 5 cut(s) 52, 121, 356, 443, 656
BanI GGYRCC 3 cut(s) 16, 160, 586
Bbv12I GWGCWC 1 cut(s) 195
BccI CCATC 2 cut(s) 151, 302
BceAI ACGGC 3 cut(s) 7, 349, 358
BciT130I CCWGG 1 cut(s) 642
BclI TGATCA 1 cut(s) 646
BcnI CCSGG 2 cut(s) 165, 239
BcoDI GTCTC 2 cut(s) 194, 569
BfaI CTAG 2 cut(s) 291, 489
BfoI RGCGCY 3 cut(s) 20, 107, 177
BglI GCCNNNNNGGC 1 cut(s) 28
BglII AGATCT 1 cut(s) 297
BisI GCNGC 5 cut(s) 15, 20, 337, 340, 351
BlsI GCNGC 5 cut(s) 16, 21, 338, 341, 352
Bme1390I CCNGG 3 cut(s) 165, 239, 642
BmgBI CACGTC 1 cut(s) 288
BmiI GGNNCC 3 cut(s) 18, 162, 588
BmrFI CCNGG 3 cut(s) 165, 239, 642
BplI GAGNNNNNCTC 4 cut(s) 215, 247, 566, 598
BpmI CTGGAG 1 cut(s) 209
BpuMI CCSGG 2 cut(s) 165, 239
BsaHI GRCGYC 2 cut(s) 17, 53
BsaJI CCNNGG 4 cut(s) 120, 164, 177, 374
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 641, 677
Bse118I RCCGGY 1 cut(s) 31
BseBI CCWGG 1 cut(s) 642
BseDI CCNNGG 4 cut(s) 120, 164, 177, 374
BseLI CCNNNNNNNGG 3 cut(s) 13, 641, 677
BseMII CTCAG 1 cut(s) 582
BseRI GAGGAG 1 cut(s) 194
BseX3I CGGCCG 2 cut(s) 235, 351
Bsh1236I CGCG 1 cut(s) 67
Bsh1285I CGRYCG 3 cut(s) 80, 238, 354
BshFI GGCC 3 cut(s) 31, 237, 353
BshNI GGYRCC 3 cut(s) 16, 160, 586
BsiEI CGRYCG 3 cut(s) 80, 238, 354
BsiHKAI GWGCWC 1 cut(s) 195
BsiSI CCGG 6 cut(s) 32, 80, 131, 164, 234, 238
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 3 cut(s) 13, 641, 677
BsmAI GTCTC 2 cut(s) 194, 569
BsmFI GGGAC 1 cut(s) 296
BsmI GAATGC 1 cut(s) 552
BsnI GGCC 3 cut(s) 31, 237, 353
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 5 cut(s) 133, 147, 297, 545, 646
BspACI CCGC 9 cut(s) 14, 20, 35, 67, 145, 336, 339, 342, 350
BspANI GGCC 3 cut(s) 31, 237, 353
BspCNI CTCAG 1 cut(s) 581
BspFNI CGCG 1 cut(s) 67
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 3 cut(s) 18, 162, 588
BspPI GGATC 2 cut(s) 141, 155
BspQI GCTCTTC 1 cut(s) 164
BspT107I GGYRCC 3 cut(s) 16, 160, 586
BsrBI CCGCTC 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 31
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 4 cut(s) 120, 164, 177, 374
BssMI GATC 5 cut(s) 133, 147, 297, 545, 646
BssNI GRCGYC 2 cut(s) 17, 53
Bst2UI CCWGG 1 cut(s) 642
Bst6I CTCTTC 1 cut(s) 164
BstACI GRCGYC 2 cut(s) 17, 53
BstC8I GCNNGC 3 cut(s) 33, 102, 597
BstDEI CTNAG 1 cut(s) 568
BstDSI CCRYGG 1 cut(s) 374
BstFNI CGCG 1 cut(s) 67
BstH2I RGCGCY 3 cut(s) 20, 107, 177
BstHHI GCGC 4 cut(s) 19, 67, 106, 176
BstKTI GATC 5 cut(s) 136, 150, 300, 548, 649
BstMAI GTCTC 2 cut(s) 194, 569
BstMBI GATC 5 cut(s) 133, 147, 297, 545, 646
BstMCI CGRYCG 3 cut(s) 80, 238, 354
BstMWI GCNNNNNNNGC 3 cut(s) 28, 97, 494
BstNI CCWGG 1 cut(s) 642
BstSCI CCNGG 3 cut(s) 163, 237, 640
BstUI CGCG 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 297
BstXI CCANNNNNNTGG 2 cut(s) 484, 524
BstYI RGATCY 1 cut(s) 297
BstZI CGGCCG 2 cut(s) 235, 351
BsuRI GGCC 3 cut(s) 31, 237, 353
BtgI CCRYGG 1 cut(s) 374
BtrI CACGTC 1 cut(s) 288
Cac8I GCNNGC 3 cut(s) 33, 102, 597
CaiI CAGNNNCTG 1 cut(s) 106
CciI TCATGA 1 cut(s) 556
CfoI GCGC 4 cut(s) 19, 67, 106, 176
Cfr10I RCCGGY 1 cut(s) 31
CsiI ACCWGGT 1 cut(s) 640
CviAII CATG 3 cut(s) 212, 494, 557
CviJI RGCY 7 cut(s) 31, 91, 237, 353, 373, 488, 522
CviKI_1 RGCY 7 cut(s) 31, 91, 237, 353, 373, 488, 522
DdeI CTNAG 1 cut(s) 568
DinI GGCGCC 1 cut(s) 18
DpnI GATC 5 cut(s) 135, 149, 299, 547, 648
DpnII GATC 5 cut(s) 133, 147, 297, 545, 646
DraIII CACNNNGTG 1 cut(s) 644
DrdI GACNNNNNNGTC 2 cut(s) 58, 272
DseDI GACNNNNNNGTC 2 cut(s) 58, 272
EaeI YGGCCR 3 cut(s) 29, 235, 351
EagI CGGCCG 2 cut(s) 235, 351
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
EclXI CGGCCG 2 cut(s) 235, 351
Eco52I CGGCCG 2 cut(s) 235, 351
EcoRII CCWGG 1 cut(s) 640
EgeI GGCGCC 1 cut(s) 18
EheI GGCGCC 1 cut(s) 18
FaeI CATG 3 cut(s) 215, 497, 560
FaiI YATR 5 cut(s) 198, 213, 495, 558, 563
FaqI GGGAC 1 cut(s) 296
FatI CATG 3 cut(s) 211, 493, 556
FauI CCCGC 1 cut(s) 28
FbaI TGATCA 1 cut(s) 646
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 5 cut(s) 15, 20, 337, 340, 351
Fsp4HI GCNGC 5 cut(s) 15, 20, 337, 340, 351
FspBI CTAG 2 cut(s) 291, 489
GlaI GCGC 4 cut(s) 18, 66, 105, 175
GluI GCNGC 5 cut(s) 15, 20, 337, 340, 351
GsuI CTGGAG 1 cut(s) 209
HaeII RGCGCY 3 cut(s) 20, 107, 177
HaeIII GGCC 3 cut(s) 31, 237, 353
HapII CCGG 6 cut(s) 32, 80, 131, 164, 234, 238
HhaI GCGC 4 cut(s) 19, 67, 106, 176
Hin1I GRCGYC 2 cut(s) 17, 53
Hin1II CATG 3 cut(s) 215, 497, 560
Hin6I GCGC 4 cut(s) 17, 65, 104, 174
HinP1I GCGC 4 cut(s) 17, 65, 104, 174
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 6 cut(s) 43, 73, 202, 230, 266, 613
HpaII CCGG 6 cut(s) 32, 80, 131, 164, 234, 238
HphI GGTGA 5 cut(s) 52, 121, 356, 443, 656
Hpy166II GTNNAC 3 cut(s) 51, 72, 378
Hpy188I TCNGA 2 cut(s) 121, 297
Hpy188III TCNNGA 4 cut(s) 188, 450, 557, 671
Hpy8I GTNNAC 3 cut(s) 51, 72, 378
Hpy99I CGWCG 4 cut(s) 55, 58, 61, 64
HpyAV CCTTC 2 cut(s) 358, 521
HpyCH4IV ACGT 2 cut(s) 53, 287
HpyCH4V TGCA 2 cut(s) 211, 315
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 97, 494
HpyF3I CTNAG 1 cut(s) 568
HpySE526I ACGT 2 cut(s) 53, 287
Hsp92I GRCGYC 2 cut(s) 17, 53
Hsp92II CATG 3 cut(s) 215, 497, 560
HspAI GCGC 4 cut(s) 17, 65, 104, 174
KasI GGCGCC 1 cut(s) 16
KroI GCCGGC 1 cut(s) 31
KroNI GCCGGC 1 cut(s) 33
Ksp22I TGATCA 1 cut(s) 646
Kzo9I GATC 5 cut(s) 133, 147, 297, 545, 646
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 2 cut(s) 142, 190
MabI ACCWGGT 1 cut(s) 640
MaeI CTAG 2 cut(s) 291, 489
MaeII ACGT 2 cut(s) 53, 287
MaeIII GTNAC 2 cut(s) 254, 463
MalI GATC 5 cut(s) 135, 149, 299, 547, 648
MbiI CCGCTC 1 cut(s) 145
MboI GATC 5 cut(s) 133, 147, 297, 545, 646
MboII GAAGA 2 cut(s) 181, 373
MflI RGATCY 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 3 cut(s) 384, 395, 419
Mly113I GGCGCC 1 cut(s) 17
MlyI GAGTC 5 cut(s) 52, 67, 196, 224, 260
MroNI GCCGGC 1 cut(s) 31
MroXI GAANNNNTTC 1 cut(s) 445
MslI CAYNNNNRTG 1 cut(s) 482
MspI CCGG 6 cut(s) 32, 80, 131, 164, 234, 238
MspR9I CCNGG 3 cut(s) 165, 239, 642
Mva1269I GAATGC 1 cut(s) 552
MvaI CCWGG 1 cut(s) 642
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 3 cut(s) 28, 97, 494
NaeI GCCGGC 1 cut(s) 33
NarI GGCGCC 1 cut(s) 17
NciI CCSGG 2 cut(s) 165, 239
NdeII GATC 5 cut(s) 133, 147, 297, 545, 646
NgoMIV GCCGGC 1 cut(s) 31
NlaIII CATG 3 cut(s) 215, 497, 560
NlaIV GGNNCC 3 cut(s) 18, 162, 588
NmeAIII GCCGAG 4 cut(s) 178, 202, 276, 379
NmuCI GTSAC 1 cut(s) 463
OliI CACNNNNGTG 1 cut(s) 482
PagI TCATGA 1 cut(s) 556
PciSI GCTCTTC 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PctI GAATGC 1 cut(s) 552
PdiI GCCGGC 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 445
PfeI GAWTC 1 cut(s) 613
PflFI GACNNNGTC 1 cut(s) 55
PflMI CCANNNNNTGG 1 cut(s) 677
PkrI GCNGC 5 cut(s) 16, 21, 338, 341, 352
PleI GAGTC 5 cut(s) 51, 67, 196, 224, 260
PluTI GGCGCC 1 cut(s) 20
PpsI GAGTC 5 cut(s) 51, 67, 196, 224, 260
Psp6I CCWGG 1 cut(s) 640
PspGI CCWGG 1 cut(s) 640
PspN4I GGNNCC 3 cut(s) 18, 162, 588
PstNI CAGNNNCTG 1 cut(s) 106
PsuI RGATCY 1 cut(s) 297
PsyI GACNNNGTC 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 482
SalI GTCGAC 1 cut(s) 49
SapI GCTCTTC 1 cut(s) 164
SatI GCNGC 5 cut(s) 15, 20, 337, 340, 351
Sau3AI GATC 5 cut(s) 133, 147, 297, 545, 646
SchI GAGTC 5 cut(s) 52, 67, 196, 224, 260
ScrFI CCNGG 3 cut(s) 165, 239, 642
SduI GDGCHC 1 cut(s) 195
SexAI ACCWGGT 1 cut(s) 640
SfoI GGCGCC 1 cut(s) 18
SmiMI CAYNNNNRTG 1 cut(s) 482
Sse9I AATT 3 cut(s) 384, 395, 419
SsiI CCGC 9 cut(s) 14, 20, 35, 67, 145, 336, 339, 342, 350
SspDI GGCGCC 1 cut(s) 16
SspI AATATT 1 cut(s) 506
SspMI CTAG 2 cut(s) 291, 489
StyD4I CCNGG 3 cut(s) 163, 237, 640
TaiI ACGT 2 cut(s) 56, 290
TaqI TCGA 4 cut(s) 50, 76, 96, 243
TasI AATT 3 cut(s) 384, 395, 419
TauI GCSGC 5 cut(s) 17, 22, 339, 342, 353
TfiI GAWTC 1 cut(s) 613
TseFI GTSAC 1 cut(s) 463
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 2 cut(s) 545, 648
Tth111I GACNNNGTC 1 cut(s) 55
Van91I CCANNNNNTGG 1 cut(s) 677
XmiI GTMKAC 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 445
XspI CTAG 2 cut(s) 291, 489
ZraI GACGTC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.