MD02G1259300.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0011264
Physical Location & Seq
Forward (+)
31278313 .. 31280546
2234 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1259300.v1.1.491

Sequence Viewer

Length: 693 bp
ATGTTTCAAGAAACGGCGCCGTGTTGGTCGAGCGTGGTTCAGTCGGCGGCGTCGACTCCGTGGACTCGGCTCGAGGACAAGGTGTTTGAGCAGGCGCTGGTCAGGTTCTCCGAGGACTTGCCCAATCGGTGGGAGAGGATCGCCGAAGAGTTGCCGGGCAAGACTCCCAAGGAGGTGTTGGAGCACTACGAGGACTTGGTGCACGATGTCTTGGAAATCGATTCCGGCCGGGTCAATTTGCCCAGTTATGCTGATGAGTCGATGGTCGGCTGGGAGGACACGGCCAGTCAGATCACTTTTGGGTCCAACCGCGAGCCTGAGAGGAAGAAGGGAACGCCTTGGACTGAAGAAGAACACAAGTTATTTCTAATTGGACTAAAAAAGTTTGGTAAGGGCGACTGGAGGAGCATTTCAAGGAATGTGGTTGTGACAAGAACACCAACCCAAGTAGCAAGCCACGCCCAGAAGTATTTCCTTCGTCAAACCTCAATGAAAAAGGAAAGGAAAAGATCAAGCATTCACGACATAACCACTGTAGAGAGCAACTCAGTATCTGTGCCTGCTGATCGCAACTGGATTCCTCCACCTGCAGTTCCGGTTCATCAGTCTCCATTGCAACATTTGACCCAACAGAGTCATTTGCCTGATCAGGGGGATTTGTCGGGGTACCAAGATTTTGGCTATCCGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

231

Amino Acids

26.31

Weight (kDa)

5.78

Isoelectric Point (pI)

56.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 20 - 64 9.4e-08 Myb-like DNA-binding domain
Myb_DNA-binding_2 PF23082 20 - 65 9.1e-06 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 113 - 158 4e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04760
fragaria_vesca FvH4_7g06630 FvH4_7g06630 FvH4_7g06630
malus_domestica MD02G1259300.v1.1 MD07G1061400.v1.1
prunus_persica Prupe.2G070600_v2.0.a1
pyrus_communis pycom02g22070 pycom07g04700
rosa_chinensis RchiOBHm_Chr1g0335311 RchiOBHm_Chr1g0338881
rosa_laevigata RLG00000029381
rosa_multiflora Rmu_sc0003404.1_g000004
rosa_roxburghii Rroxscaffold_4G00316000
rosa_rugosa Rorug01G0122400
rosa_samantha Rh1AG143500 Rh1BG112500 Rh1CG135100 Rh1DG149200
rosa_wichuraiana Rw0G009230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 595
Acc36I ACCTGC 1 cut(s) 595
Acc65I GGTACC 1 cut(s) 666
AccB1I GGYRCC 2 cut(s) 16, 666
AccB7I CCANNNNNTGG 1 cut(s) 129
AccI GTMKAC 1 cut(s) 53
AccII CGCG 1 cut(s) 312
AciI CCGC 2 cut(s) 47, 310
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 2 cut(s) 226, 282
AcuI CTGAAG 1 cut(s) 366
AcyI GRCGYC 2 cut(s) 17, 50
AfaI GTAC 1 cut(s) 668
AfiI CCNNNNNNNGG 2 cut(s) 129, 650
AgsI TTSAA 2 cut(s) 8, 414
Alw21I GWGCWC 2 cut(s) 186, 204
Alw26I GTCTC 1 cut(s) 612
Alw44I GTGCAC 1 cut(s) 200
AlwI GGATC 1 cut(s) 146
AlwNI CAGNNNCTG 2 cut(s) 97, 554
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 2 cut(s) 226, 282
ApaLI GTGCAC 1 cut(s) 200
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
Asp700I GAANNNNTTC 1 cut(s) 470
Asp718I GGTACC 1 cut(s) 666
AspLEI GCGC 2 cut(s) 19, 97
AspS9I GGNCC 1 cut(s) 303
AsuC2I CCSGG 2 cut(s) 156, 230
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 1 cut(s) 303
BaeGI GKGCMC 1 cut(s) 204
BanI GGYRCC 2 cut(s) 16, 666
Bbv12I GWGCWC 2 cut(s) 186, 204
BccI CCATC 1 cut(s) 256
BceAI ACGGC 3 cut(s) 4, 30, 297
BclI TGATCA 1 cut(s) 646
BcnI CCSGG 2 cut(s) 156, 230
BcoDI GTCTC 1 cut(s) 612
BfmI CTRYAG 2 cut(s) 534, 588
BfoI RGCGCY 2 cut(s) 20, 98
BfuAI ACCTGC 1 cut(s) 595
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 2 cut(s) 156, 230
Bme18I GGWCC 1 cut(s) 303
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 303
BmiI GGNNCC 3 cut(s) 18, 304, 668
BmrFI CCNGG 2 cut(s) 156, 230
BmrI ACTGGG 1 cut(s) 237
BmuI ACTGGG 1 cut(s) 237
BplI GAGNNNNNCTC 2 cut(s) 530, 562
BpmI CTGGAG 1 cut(s) 421
BpuMI CCSGG 2 cut(s) 156, 230
Bsa29I ATCGAT 1 cut(s) 219
BsaHI GRCGYC 2 cut(s) 17, 50
BsaJI CCNNGG 4 cut(s) 59, 111, 168, 338
BsaWI WCCGGW 1 cut(s) 595
Bsc4I CCNNNNNNNGG 2 cut(s) 129, 650
Bse1I ACTGG 4 cut(s) 243, 285, 404, 578
Bse3DI GCAATG 1 cut(s) 611
BseCI ATCGAT 1 cut(s) 219
BseDI CCNNGG 4 cut(s) 59, 111, 168, 338
BseLI CCNNNNNNNGG 2 cut(s) 129, 650
BseMI GCAATG 1 cut(s) 611
BseMII CTCAG 2 cut(s) 309, 561
BseNI ACTGG 4 cut(s) 243, 285, 404, 578
BseRI GAGGAG 1 cut(s) 418
BseSI GKGCMC 1 cut(s) 204
BseX3I CGGCCG 1 cut(s) 226
BseYI CCCAGC 1 cut(s) 270
Bsh1236I CGCG 1 cut(s) 312
Bsh1285I CGRYCG 1 cut(s) 229
BshFI GGCC 2 cut(s) 228, 284
BshNI GGYRCC 2 cut(s) 16, 666
BshVI ATCGAT 1 cut(s) 219
BsiEI CGRYCG 1 cut(s) 229
BsiHKAI GWGCWC 2 cut(s) 186, 204
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 4 cut(s) 155, 225, 229, 596
BslI CCNNNNNNNGG 2 cut(s) 129, 650
BsmAI GTCTC 1 cut(s) 612
BsmI GAATGC 1 cut(s) 516
BsnI GGCC 2 cut(s) 228, 284
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 2 cut(s) 186, 204
Bsp143I GATC 5 cut(s) 138, 291, 509, 565, 646
BspACI CCGC 2 cut(s) 47, 310
BspANI GGCC 2 cut(s) 228, 284
BspCNI CTCAG 2 cut(s) 310, 560
BspDI ATCGAT 1 cut(s) 219
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 3 cut(s) 18, 304, 668
BspMAI CTGCAG 1 cut(s) 592
BspMI ACCTGC 1 cut(s) 595
BspPI GGATC 1 cut(s) 146
BspT107I GGYRCC 2 cut(s) 16, 666
BsrDI GCAATG 1 cut(s) 611
BsrI ACTGG 4 cut(s) 243, 285, 404, 578
BssECI CCNNGG 4 cut(s) 59, 111, 168, 338
BssMI GATC 5 cut(s) 138, 291, 509, 565, 646
BssNI GRCGYC 2 cut(s) 17, 50
BssT1I CCWWGG 2 cut(s) 168, 338
Bst4CI ACNGT 1 cut(s) 535
Bst6I CTCTTC 1 cut(s) 141
BstACI GRCGYC 2 cut(s) 17, 50
BstC8I GCNNGC 4 cut(s) 93, 314, 454, 561
BstDEI CTNAG 2 cut(s) 318, 547
BstDSI CCRYGG 1 cut(s) 59
BstFNI CGCG 1 cut(s) 312
BstH2I RGCGCY 2 cut(s) 20, 98
BstHHI GCGC 2 cut(s) 19, 97
BstKTI GATC 5 cut(s) 141, 294, 512, 568, 649
BstMAI GTCTC 1 cut(s) 612
BstMBI GATC 5 cut(s) 138, 291, 509, 565, 646
BstMCI CGRYCG 1 cut(s) 229
BstMWI GCNNNNNNNGC 1 cut(s) 458
BstSCI CCNGG 2 cut(s) 154, 228
BstSFI CTRYAG 2 cut(s) 534, 588
BstSLI GKGCMC 1 cut(s) 204
BstUI CGCG 1 cut(s) 312
BstXI CCANNNNNNTGG 1 cut(s) 677
BstZI CGGCCG 1 cut(s) 226
Bsu15I ATCGAT 1 cut(s) 219
BsuRI GGCC 2 cut(s) 228, 284
BsuTUI ATCGAT 1 cut(s) 219
BtgI CCRYGG 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 531
BveI ACCTGC 1 cut(s) 595
Cac8I GCNNGC 4 cut(s) 93, 314, 454, 561
CaiI CAGNNNCTG 2 cut(s) 97, 554
CfoI GCGC 2 cut(s) 19, 97
Cfr13I GGNCC 1 cut(s) 303
ClaI ATCGAT 1 cut(s) 219
CseI GACGC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 667
CspCI CAANNNNNGTGG 2 cut(s) 402, 437
CviJI RGCY 7 cut(s) 70, 228, 270, 284, 316, 456, 681
CviKI_1 RGCY 7 cut(s) 70, 228, 270, 284, 316, 456, 681
CviQI GTAC 1 cut(s) 667
DdeI CTNAG 2 cut(s) 318, 547
DinI GGCGCC 1 cut(s) 18
DpnI GATC 5 cut(s) 140, 293, 511, 567, 648
DpnII GATC 5 cut(s) 138, 291, 509, 565, 646
EaeI YGGCCR 2 cut(s) 226, 282
EagI CGGCCG 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
EclXI CGGCCG 1 cut(s) 226
Eco130I CCWWGG 2 cut(s) 168, 338
Eco47I GGWCC 1 cut(s) 303
Eco52I CGGCCG 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 71
EcoT14I CCWWGG 2 cut(s) 168, 338
EgeI GGCGCC 1 cut(s) 18
EheI GGCGCC 1 cut(s) 18
ErhI CCWWGG 2 cut(s) 168, 338
FaiI YATR 2 cut(s) 249, 527
FbaI TGATCA 1 cut(s) 646
FblI GTMKAC 1 cut(s) 53
Fnu4HI GCNGC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 48
GlaI GCGC 2 cut(s) 18, 96
GluI GCNGC 1 cut(s) 48
GsaI CCCAGC 1 cut(s) 274
GsuI CTGGAG 1 cut(s) 421
HaeII RGCGCY 2 cut(s) 20, 98
HaeIII GGCC 2 cut(s) 228, 284
HapII CCGG 4 cut(s) 155, 225, 229, 596
HgaI GACGC 1 cut(s) 39
HhaI GCGC 2 cut(s) 19, 97
Hin1I GRCGYC 2 cut(s) 17, 50
Hin6I GCGC 2 cut(s) 17, 95
HinP1I GCGC 2 cut(s) 17, 95
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 7 cut(s) 55, 64, 163, 221, 257, 577, 634
HpaII CCGG 4 cut(s) 155, 225, 229, 596
Hpy166II GTNNAC 3 cut(s) 54, 63, 202
Hpy188I TCNGA 3 cut(s) 112, 291, 687
Hpy188III TCNNGA 2 cut(s) 8, 521
Hpy8I GTNNAC 3 cut(s) 54, 63, 202
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 2 cut(s) 322, 485
HpyCH4III ACNGT 1 cut(s) 535
HpyCH4V TGCA 3 cut(s) 202, 590, 616
HpyF10VI GCNNNNNNNGC 1 cut(s) 458
HpyF3I CTNAG 2 cut(s) 318, 547
Hsp92I GRCGYC 2 cut(s) 17, 50
HspAI GCGC 2 cut(s) 17, 95
KasI GGCGCC 1 cut(s) 16
KpnI GGTACC 1 cut(s) 670
Ksp22I TGATCA 1 cut(s) 646
Kzo9I GATC 5 cut(s) 138, 291, 509, 565, 646
LmnI GCTCC 2 cut(s) 181, 405
MaeIII GTNAC 1 cut(s) 427
MalI GATC 5 cut(s) 140, 293, 511, 567, 648
MboI GATC 5 cut(s) 138, 291, 509, 565, 646
MboII GAAGA 4 cut(s) 158, 337, 359, 362
MhlI GDGCHC 2 cut(s) 186, 204
MluCI AATT 2 cut(s) 235, 369
Mly113I GGCGCC 1 cut(s) 17
MlyI GAGTC 5 cut(s) 49, 58, 157, 266, 643
MmeI TCCRAC 2 cut(s) 159, 330
MroXI GAANNNNTTC 1 cut(s) 470
MspI CCGG 4 cut(s) 155, 225, 229, 596
MspR9I CCNGG 2 cut(s) 156, 230
Mva1269I GAATGC 1 cut(s) 516
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 458
NarI GGCGCC 1 cut(s) 17
NciI CCSGG 2 cut(s) 156, 230
NdeII GATC 5 cut(s) 138, 291, 509, 565, 646
NlaIV GGNNCC 3 cut(s) 18, 304, 668
NmeAIII GCCGAG 1 cut(s) 46
NmuCI GTSAC 1 cut(s) 427
PaeR7I CTCGAG 1 cut(s) 71
PaqCI CACCTGC 1 cut(s) 595
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PctI GAATGC 1 cut(s) 516
PdmI GAANNNNTTC 1 cut(s) 470
PfeI GAWTC 2 cut(s) 221, 577
PflMI CCANNNNNTGG 1 cut(s) 129
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 5 cut(s) 49, 58, 157, 265, 642
PluTI GGCGCC 1 cut(s) 20
PpsI GAGTC 5 cut(s) 49, 58, 157, 265, 642
PspFI CCCAGC 1 cut(s) 270
PspN4I GGNNCC 3 cut(s) 18, 304, 668
PspPI GGNCC 1 cut(s) 303
PspXI VCTCGAGB 1 cut(s) 71
PstI CTGCAG 1 cut(s) 592
PstNI CAGNNNCTG 2 cut(s) 97, 554
RsaI GTAC 1 cut(s) 668
RsaNI GTAC 1 cut(s) 667
SalI GTCGAC 1 cut(s) 52
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 5 cut(s) 138, 291, 509, 565, 646
Sau96I GGNCC 1 cut(s) 303
SchI GAGTC 5 cut(s) 49, 58, 157, 266, 643
ScrFI CCNGG 2 cut(s) 156, 230
SduI GDGCHC 2 cut(s) 186, 204
SetI ASST 5 cut(s) 84, 107, 177, 488, 589
SfcI CTRYAG 2 cut(s) 534, 588
SfoI GGCGCC 1 cut(s) 18
Sfr274I CTCGAG 1 cut(s) 71
SinI GGWCC 1 cut(s) 303
SlaI CTCGAG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 2 cut(s) 235, 369
SsiI CCGC 2 cut(s) 47, 310
SspDI GGCGCC 1 cut(s) 16
StyD4I CCNGG 2 cut(s) 154, 228
StyI CCWWGG 2 cut(s) 168, 338
TaaI ACNGT 1 cut(s) 535
TaqI TCGA 5 cut(s) 29, 53, 72, 219, 260
TasI AATT 2 cut(s) 235, 369
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 2 cut(s) 221, 577
TscAI CASTG 1 cut(s) 538
TseFI GTSAC 1 cut(s) 427
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 2 cut(s) 506, 590
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 1 cut(s) 538
Van91I CCANNNNNTGG 1 cut(s) 129
VneI GTGCAC 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 303
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XhoI CTCGAG 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 53
XmnI GAANNNNTTC 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.