MD07G1061400.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0011264
Physical Location & Seq
Reverse (-)
5734280 .. 5736482
2203 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1061400.v1.1.491

Sequence Viewer

Length: 861 bp
ATGAGCTGGCATTTTGACTCTCTCAGCACCCAAAAAGTTCCTAAAAAAAAAAACCTGTCTCCATCCCGTCCGTCCATCCTCTATAAAAACGACAAAAACTCTCCAAATCTCCCAACGCGAAATGTCCTAGAAACCAAACAAAAAACAATAAAAACCCCAAGCCCGCGAATGTTCCAAGAAACGGCGCCGTGTTGGTCGGACATGGCTCAGTCGGCGGCGTCGGCTCCGTGGACTCGGTTTGAAGACAAGTTGTTTGAGCAGGCGCTGGTCAGGTTCTCCGACGACTTGCCCGATCGGTGGGAGAGGATCGCCGAAGAGGTACCGGGCAAGACTCCTAAAGAGGTTTTGGAGCACTACGAGGATTTGGTGCACGATGTGTTGGAGATCGATTCCGGCCGGGTCAATGTGCCGAGTTATGCTGATGAGTGCTGGGACTCGGCCGGTCAGATCACTTTTGGGTCCAAGGTCAATAAGCATGGCGAGCCTGAGAGGAAGAAGGGAACTCCTTGGACTCCACAAGAACACAAGTTATTTCTAATCGGACTAAAAAAGTTTGGTAAGGGCGATTGGAGGAGTATTTCAAGGAATGTGGTTGTGACAAGAACACCAACCCAAGTAGCAAGCCATGCCCAGAAGTATTTCCTTCGCCAAAGCTCAGTGAAAAAGGAAAGGAAAAGATCAAGCATTCACGACATAACCACTGTAGAGAGTAACTCGGTACCAGTGCCTGCTGATCGCAATTGGATTCCTCCACCTGCAGATCTAACTCACCAGTCTCCATTGCAACAGTTGACCCCGCAGAGTCATGTGCCTGATCAGGGGGGTTTGTTGAGGTACCAAGACTTTGGCTATCCGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

287

Amino Acids

32.7

Weight (kDa)

9.16

Isoelectric Point (pI)

62.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 76 - 120 2.5e-07 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 169 - 214 9.7e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04760
fragaria_vesca FvH4_7g06630 FvH4_7g06630 FvH4_7g06630
malus_domestica MD02G1259300.v1.1 MD07G1061400.v1.1
prunus_persica Prupe.2G070600_v2.0.a1
pyrus_communis pycom02g22070 pycom07g04700
rosa_chinensis RchiOBHm_Chr1g0335311 RchiOBHm_Chr1g0338881
rosa_laevigata RLG00000029381
rosa_multiflora Rmu_sc0003404.1_g000004
rosa_roxburghii Rroxscaffold_4G00316000
rosa_rugosa Rorug01G0122400
rosa_samantha Rh1AG143500 Rh1BG112500 Rh1CG135100 Rh1DG149200
rosa_wichuraiana Rw0G009230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 763
Acc36I ACCTGC 1 cut(s) 763
Acc65I GGTACC 3 cut(s) 319, 718, 834
AccB1I GGYRCC 4 cut(s) 184, 319, 718, 834
AccII CGCG 2 cut(s) 118, 166
AciI CCGC 3 cut(s) 164, 215, 797
AclWI GGATC 1 cut(s) 314
AcoI YGGCCR 2 cut(s) 394, 438
AcyI GRCGYC 2 cut(s) 185, 218
AdeI CACNNNGTG 1 cut(s) 376
AfaI GTAC 3 cut(s) 321, 720, 836
AfiI CCNNNNNNNGG 3 cut(s) 181, 297, 818
AgsI TTSAA 2 cut(s) 242, 582
AluBI AGCT 2 cut(s) 6, 654
AluI AGCT 2 cut(s) 6, 654
Alw21I GWGCWC 2 cut(s) 354, 372
Alw26I GTCTC 2 cut(s) 63, 780
Alw44I GTGCAC 1 cut(s) 368
AlwI GGATC 1 cut(s) 314
AlwNI CAGNNNCTG 2 cut(s) 265, 728
AoxI GGCC 2 cut(s) 394, 438
ApaLI GTGCAC 1 cut(s) 368
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
Asp700I GAANNNNTTC 1 cut(s) 638
Asp718I GGTACC 3 cut(s) 319, 718, 834
AspLEI GCGC 2 cut(s) 187, 265
AspS9I GGNCC 1 cut(s) 459
AsuC2I CCSGG 2 cut(s) 324, 398
AsuHPI GGTGA 1 cut(s) 761
AvaII GGWCC 1 cut(s) 459
BaeGI GKGCMC 1 cut(s) 372
BanI GGYRCC 4 cut(s) 184, 319, 718, 834
BbsI GAAGAC 1 cut(s) 249
Bbv12I GWGCWC 2 cut(s) 354, 372
BccI CCATC 2 cut(s) 70, 83
BceAI ACGGC 2 cut(s) 172, 198
BclI TGATCA 1 cut(s) 814
BcnI CCSGG 2 cut(s) 324, 398
BcoDI GTCTC 2 cut(s) 63, 780
BfaI CTAG 1 cut(s) 128
BfmI CTRYAG 2 cut(s) 702, 756
BfoI RGCGCY 2 cut(s) 188, 266
BfuAI ACCTGC 1 cut(s) 763
BglII AGATCT 1 cut(s) 760
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 2 cut(s) 324, 398
Bme18I GGWCC 1 cut(s) 459
BmgT120I GGNCC 1 cut(s) 459
BmiI GGNNCC 6 cut(s) 186, 225, 321, 460, 720, 836
BmrFI CCNGG 2 cut(s) 324, 398
BpiI GAAGAC 1 cut(s) 249
BplI GAGNNNNNCTC 2 cut(s) 698, 730
BpuMI CCSGG 2 cut(s) 324, 398
Bsa29I ATCGAT 1 cut(s) 387
BsaHI GRCGYC 2 cut(s) 185, 218
BsaJI CCNNGG 3 cut(s) 227, 462, 506
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 297, 818
Bse118I RCCGGY 1 cut(s) 440
Bse1I ACTGG 2 cut(s) 722, 772
Bse3DI GCAATG 1 cut(s) 779
BseCI ATCGAT 1 cut(s) 387
BseDI CCNNGG 3 cut(s) 227, 462, 506
BseGI GGATG 2 cut(s) 62, 75
BseLI CCNNNNNNNGG 3 cut(s) 181, 297, 818
BseMI GCAATG 1 cut(s) 779
BseMII CTCAG 4 cut(s) 37, 221, 477, 669
BseNI ACTGG 2 cut(s) 722, 772
BseRI GAGGAG 1 cut(s) 586
BseSI GKGCMC 1 cut(s) 372
BseX3I CGGCCG 2 cut(s) 394, 438
BseYI CCCAGC 1 cut(s) 429
Bsh1236I CGCG 2 cut(s) 118, 166
Bsh1285I CGRYCG 3 cut(s) 295, 397, 441
BshFI GGCC 2 cut(s) 396, 440
BshNI GGYRCC 4 cut(s) 184, 319, 718, 834
BshVI ATCGAT 1 cut(s) 387
BsiEI CGRYCG 3 cut(s) 295, 397, 441
BsiHKAI GWGCWC 2 cut(s) 354, 372
BsiSI CCGG 4 cut(s) 323, 393, 397, 441
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 3 cut(s) 181, 297, 818
BsmAI GTCTC 2 cut(s) 63, 780
BsmFI GGGAC 1 cut(s) 446
BsmI GAATGC 1 cut(s) 684
BsnI GGCC 2 cut(s) 396, 440
Bsp1286I GDGCHC 2 cut(s) 354, 372
Bsp143I GATC 8 cut(s) 292, 306, 384, 447, 677, 733, 760, 814
BspACI CCGC 3 cut(s) 164, 215, 797
BspANI GGCC 2 cut(s) 396, 440
BspCNI CTCAG 4 cut(s) 36, 220, 478, 668
BspDI ATCGAT 1 cut(s) 387
BspFNI CGCG 2 cut(s) 118, 166
BspLI GGNNCC 6 cut(s) 186, 225, 321, 460, 720, 836
BspMAI CTGCAG 1 cut(s) 760
BspMI ACCTGC 1 cut(s) 763
BspPI GGATC 1 cut(s) 314
BspT107I GGYRCC 4 cut(s) 184, 319, 718, 834
BsrDI GCAATG 1 cut(s) 779
BsrFI RCCGGY 1 cut(s) 440
BsrI ACTGG 2 cut(s) 722, 772
BssAI RCCGGY 1 cut(s) 440
BssECI CCNNGG 3 cut(s) 227, 462, 506
BssMI GATC 8 cut(s) 292, 306, 384, 447, 677, 733, 760, 814
BssNI GRCGYC 2 cut(s) 185, 218
BssT1I CCWWGG 2 cut(s) 462, 506
Bst4CI ACNGT 2 cut(s) 703, 789
Bst6I CTCTTC 1 cut(s) 309
BstACI GRCGYC 2 cut(s) 185, 218
BstAPI GCANNNNNTGC 1 cut(s) 626
BstC8I GCNNGC 6 cut(s) 8, 164, 261, 482, 622, 729
BstDEI CTNAG 4 cut(s) 23, 207, 486, 655
BstDSI CCRYGG 1 cut(s) 227
BstF5I GGATG 2 cut(s) 62, 75
BstFNI CGCG 2 cut(s) 118, 166
BstH2I RGCGCY 2 cut(s) 188, 266
BstHHI GCGC 2 cut(s) 187, 265
BstKTI GATC 8 cut(s) 295, 309, 387, 450, 680, 736, 763, 817
BstMAI GTCTC 2 cut(s) 63, 780
BstMBI GATC 8 cut(s) 292, 306, 384, 447, 677, 733, 760, 814
BstMCI CGRYCG 3 cut(s) 295, 397, 441
BstMWI GCNNNNNNNGC 4 cut(s) 212, 221, 481, 626
BstSCI CCNGG 2 cut(s) 322, 396
BstSFI CTRYAG 2 cut(s) 702, 756
BstSLI GKGCMC 1 cut(s) 372
BstUI CGCG 2 cut(s) 118, 166
BstV2I GAAGAC 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 760
BstXI CCANNNNNNTGG 1 cut(s) 845
BstYI RGATCY 1 cut(s) 760
BstZI CGGCCG 2 cut(s) 394, 438
Bsu15I ATCGAT 1 cut(s) 387
BsuRI GGCC 2 cut(s) 396, 440
BsuTUI ATCGAT 1 cut(s) 387
BtgI CCRYGG 1 cut(s) 227
BtsCI GGATG 2 cut(s) 62, 75
BtsIMutI CAGTG 3 cut(s) 663, 699, 729
BveI ACCTGC 1 cut(s) 763
Cac8I GCNNGC 6 cut(s) 8, 164, 261, 482, 622, 729
CaiI CAGNNNCTG 2 cut(s) 265, 728
CfoI GCGC 2 cut(s) 187, 265
Cfr10I RCCGGY 1 cut(s) 440
Cfr13I GGNCC 1 cut(s) 459
ClaI ATCGAT 1 cut(s) 387
CseI GACGC 1 cut(s) 207
Csp6I GTAC 3 cut(s) 320, 719, 835
CspCI CAANNNNNGTGG 2 cut(s) 570, 605
CviAII CATG 4 cut(s) 202, 476, 626, 806
CviQI GTAC 3 cut(s) 320, 719, 835
DdeI CTNAG 4 cut(s) 23, 207, 486, 655
DinI GGCGCC 1 cut(s) 186
DpnI GATC 8 cut(s) 294, 308, 386, 449, 679, 735, 762, 816
DpnII GATC 8 cut(s) 292, 306, 384, 447, 677, 733, 760, 814
DraIII CACNNNGTG 1 cut(s) 376
EaeI YGGCCR 2 cut(s) 394, 438
EagI CGGCCG 2 cut(s) 394, 438
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
EclXI CGGCCG 2 cut(s) 394, 438
Eco130I CCWWGG 2 cut(s) 462, 506
Eco47I GGWCC 1 cut(s) 459
Eco52I CGGCCG 2 cut(s) 394, 438
EcoT14I CCWWGG 2 cut(s) 462, 506
EgeI GGCGCC 1 cut(s) 186
EheI GGCGCC 1 cut(s) 186
ErhI CCWWGG 2 cut(s) 462, 506
FaeI CATG 4 cut(s) 205, 479, 629, 809
FaiI YATR 7 cut(s) 84, 203, 417, 477, 627, 695, 807
FaqI GGGAC 1 cut(s) 446
FatI CATG 4 cut(s) 201, 475, 625, 805
FauI CCCGC 2 cut(s) 171, 804
FbaI TGATCA 1 cut(s) 814
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 2 cut(s) 49, 62
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 1 cut(s) 128
GlaI GCGC 2 cut(s) 186, 264
GluI GCNGC 1 cut(s) 216
GsaI CCCAGC 1 cut(s) 433
HaeII RGCGCY 2 cut(s) 188, 266
HaeIII GGCC 2 cut(s) 396, 440
HapII CCGG 4 cut(s) 323, 393, 397, 441
HgaI GACGC 1 cut(s) 207
HhaI GCGC 2 cut(s) 187, 265
Hin1I GRCGYC 2 cut(s) 185, 218
Hin1II CATG 4 cut(s) 205, 479, 629, 809
Hin6I GCGC 2 cut(s) 185, 263
HinP1I GCGC 2 cut(s) 185, 263
HincII GTYRAC 1 cut(s) 792
HindII GTYRAC 1 cut(s) 792
HinfI GANTC 8 cut(s) 17, 232, 331, 389, 434, 511, 745, 802
HpaII CCGG 4 cut(s) 323, 393, 397, 441
HphI GGTGA 1 cut(s) 761
Hpy166II GTNNAC 3 cut(s) 231, 370, 792
Hpy188I TCNGA 5 cut(s) 199, 280, 447, 542, 855
Hpy188III TCNNGA 1 cut(s) 689
Hpy8I GTNNAC 3 cut(s) 231, 370, 792
Hpy99I CGWCG 2 cut(s) 223, 284
HpyAV CCTTC 2 cut(s) 490, 653
HpyCH4III ACNGT 2 cut(s) 703, 789
HpyCH4V TGCA 3 cut(s) 370, 758, 784
HpyF10VI GCNNNNNNNGC 4 cut(s) 212, 221, 481, 626
HpyF3I CTNAG 4 cut(s) 23, 207, 486, 655
Hsp92I GRCGYC 2 cut(s) 185, 218
Hsp92II CATG 4 cut(s) 205, 479, 629, 809
HspAI GCGC 2 cut(s) 185, 263
KasI GGCGCC 1 cut(s) 184
KpnI GGTACC 3 cut(s) 323, 722, 838
Ksp22I TGATCA 1 cut(s) 814
Kzo9I GATC 8 cut(s) 292, 306, 384, 447, 677, 733, 760, 814
LmnI GCTCC 2 cut(s) 229, 349
MaeI CTAG 1 cut(s) 128
MaeIII GTNAC 2 cut(s) 595, 710
MalI GATC 8 cut(s) 294, 308, 386, 449, 679, 735, 762, 816
MboI GATC 8 cut(s) 292, 306, 384, 447, 677, 733, 760, 814
MboII GAAGA 3 cut(s) 254, 326, 505
MfeI CAATTG 1 cut(s) 739
MflI RGATCY 1 cut(s) 760
MhlI GDGCHC 2 cut(s) 354, 372
MluCI AATT 1 cut(s) 739
Mly113I GGCGCC 1 cut(s) 185
MlyI GAGTC 6 cut(s) 11, 226, 325, 428, 505, 811
MmeI TCCRAC 3 cut(s) 177, 303, 360
MnlI CCTC 9 cut(s) 89, 297, 310, 334, 352, 483, 564, 759, 825
MroXI GAANNNNTTC 1 cut(s) 638
MspI CCGG 4 cut(s) 323, 393, 397, 441
MspR9I CCNGG 2 cut(s) 324, 398
MunI CAATTG 1 cut(s) 739
Mva1269I GAATGC 1 cut(s) 684
MvnI CGCG 2 cut(s) 118, 166
MwoI GCNNNNNNNGC 4 cut(s) 212, 221, 481, 626
NarI GGCGCC 1 cut(s) 185
NciI CCSGG 2 cut(s) 324, 398
NdeII GATC 8 cut(s) 292, 306, 384, 447, 677, 733, 760, 814
NlaIII CATG 4 cut(s) 205, 479, 629, 809
NlaIV GGNNCC 6 cut(s) 186, 225, 321, 460, 720, 836
NmeAIII GCCGAG 2 cut(s) 416, 435
NmuCI GTSAC 1 cut(s) 595
PaqCI CACCTGC 1 cut(s) 763
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PctI GAATGC 1 cut(s) 684
PdmI GAANNNNTTC 1 cut(s) 638
PfeI GAWTC 2 cut(s) 389, 745
PkrI GCNGC 1 cut(s) 217
Ple19I CGATCG 1 cut(s) 295
PleI GAGTC 6 cut(s) 11, 226, 325, 428, 505, 810
PluTI GGCGCC 1 cut(s) 188
PpsI GAGTC 6 cut(s) 11, 226, 325, 428, 505, 810
PspFI CCCAGC 1 cut(s) 429
PspN4I GGNNCC 6 cut(s) 186, 225, 321, 460, 720, 836
PspPI GGNCC 1 cut(s) 459
PstI CTGCAG 1 cut(s) 760
PstNI CAGNNNCTG 2 cut(s) 265, 728
PsuI RGATCY 1 cut(s) 760
PvuI CGATCG 1 cut(s) 295
RsaI GTAC 3 cut(s) 321, 720, 836
RsaNI GTAC 3 cut(s) 320, 719, 835
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 8 cut(s) 292, 306, 384, 447, 677, 733, 760, 814
Sau96I GGNCC 1 cut(s) 459
SchI GAGTC 6 cut(s) 11, 226, 325, 428, 505, 811
ScrFI CCNGG 2 cut(s) 324, 398
SduI GDGCHC 2 cut(s) 354, 372
SetI ASST 9 cut(s) 8, 57, 275, 321, 345, 468, 656, 757, 836
SfcI CTRYAG 2 cut(s) 702, 756
SfoI GGCGCC 1 cut(s) 186
SinI GGWCC 1 cut(s) 459
Sse9I AATT 1 cut(s) 739
SsiI CCGC 3 cut(s) 164, 215, 797
SspDI GGCGCC 1 cut(s) 184
SspMI CTAG 1 cut(s) 128
StyD4I CCNGG 2 cut(s) 322, 396
StyI CCWWGG 2 cut(s) 462, 506
TaaI ACNGT 2 cut(s) 703, 789
TaqI TCGA 1 cut(s) 387
TasI AATT 1 cut(s) 739
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 2 cut(s) 389, 745
TscAI CASTG 3 cut(s) 663, 706, 729
TseFI GTSAC 1 cut(s) 595
Tsp45I GTSAC 1 cut(s) 595
TspGWI ACGGA 2 cut(s) 60, 216
TspRI CASTG 3 cut(s) 663, 706, 729
VneI GTGCAC 1 cut(s) 368
VpaK11BI GGWCC 1 cut(s) 459
XmnI GAANNNNTTC 1 cut(s) 638
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.