Prupe.2G070600_v2.0.a1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0011264
Physical Location & Seq
Reverse (-)
10688313 .. 10690763
2451 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G070600.1

Sequence Viewer

Length: 693 bp
ATGTTCCAAGAAACGGCGCCGTGTTGGTCGAGTATGGCTCAGTCGGCGTCGGCTCCGTGGACTCGGTTCGAGGACAAGCTCTTTGAGCAGGCGCTGGTCAGGTTCTCTGAGGACTTGCCCGATCGGTGGGAGAGGATCGCCGGGGAAGTTCCGGGCAAGACTCCCGAGGAGGTTCTGGAGCACTACGAAACTTTGGTTCACGATGTGTTGGAGATTGACTCGGGCCGAGTCGAGTTGCCGAGTTATGCTGATGACTCGGTGGTCGGTTGGGATACGGCTAGTCAGATCTCTTTCGGGTCCAAGCTCAATAAGCATGGCGAGCCCGAGAGGAAGAAGGGGACTCCTTGGACTGAACAAGAACACAAGTTATTTCTAATTGGACTAAAAAAGTTTGGTAAGGGCGACTGGAGGAGCATTTCGAGGAATGTGGTTGTGACAAGAACACCAACCCAAGTGGCTAGCCATGCCCAGAAGTATTTTCTTCGCCAAAGCTCAGTGAAAAAGGAAAGGAAAAGATCAAGCATTCACGACATAACCACTGTAGAAAGTAACTCGGTAGCTGTCCCTGCTGATCGAAATTGGATTCCTCCGCCTGGTGTTCCAGCTCAACAGCCTCCATTGCAACAGCCGCAGGGTCATTTGCCTGATCAAGGGGGTTCAATGGGGTATCAAGATTTTGGTTATCCGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

231

Amino Acids

25.97

Weight (kDa)

5.99

Isoelectric Point (pI)

55.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04760
fragaria_vesca FvH4_7g06630 FvH4_7g06630 FvH4_7g06630
malus_domestica MD02G1259300.v1.1 MD07G1061400.v1.1
prunus_persica Prupe.2G070600_v2.0.a1
pyrus_communis pycom02g22070 pycom07g04700
rosa_chinensis RchiOBHm_Chr1g0335311 RchiOBHm_Chr1g0338881
rosa_laevigata RLG00000029381
rosa_multiflora Rmu_sc0003404.1_g000004
rosa_roxburghii Rroxscaffold_4G00316000
rosa_rugosa Rorug01G0122400
rosa_samantha Rh1AG143500 Rh1BG112500 Rh1CG135100 Rh1DG149200
rosa_wichuraiana Rw0G009230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 16
AciI CCGC 2 cut(s) 590, 629
AclWI GGATC 1 cut(s) 143
AcyI GRCGYC 2 cut(s) 17, 47
AdeI CACNNNGTG 1 cut(s) 205
AfiI CCNNNNNNNGG 4 cut(s) 13, 126, 593, 650
AgsI TTSAA 1 cut(s) 660
AjnI CCWGG 1 cut(s) 592
AluBI AGCT 5 cut(s) 79, 304, 492, 560, 605
AluI AGCT 5 cut(s) 79, 304, 492, 560, 605
Alw21I GWGCWC 1 cut(s) 183
AlwI GGATC 1 cut(s) 143
AlwNI CAGNNNCTG 1 cut(s) 94
Ama87I CYCGRG 3 cut(s) 164, 220, 323
AoxI GGCC 1 cut(s) 223
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AspLEI GCGC 2 cut(s) 19, 94
AspS9I GGNCC 2 cut(s) 223, 297
AsuC2I CCSGG 2 cut(s) 142, 153
AsuNHI GCTAGC 1 cut(s) 458
AvaI CYCGRG 3 cut(s) 164, 220, 323
AvaII GGWCC 1 cut(s) 297
BanI GGYRCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 183
BceAI ACGGC 3 cut(s) 4, 30, 291
BciT130I CCWGG 1 cut(s) 594
BciVI GTATCC 1 cut(s) 265
BclI TGATCA 1 cut(s) 646
BcnI CCSGG 2 cut(s) 142, 153
BfaI CTAG 2 cut(s) 279, 459
BfmI CTRYAG 1 cut(s) 540
BfoI RGCGCY 2 cut(s) 20, 95
BfuI GTATCC 1 cut(s) 265
BglII AGATCT 1 cut(s) 285
BisI GCNGC 1 cut(s) 629
BlsI GCNGC 1 cut(s) 630
Bme1390I CCNGG 3 cut(s) 142, 153, 594
Bme18I GGWCC 1 cut(s) 297
BmeT110I CYCGRG 3 cut(s) 164, 220, 323
BmgT120I GGNCC 2 cut(s) 223, 297
BmiI GGNNCC 3 cut(s) 18, 54, 298
BmrFI CCNGG 3 cut(s) 142, 153, 594
BmtI GCTAGC 1 cut(s) 462
BplI GAGNNNNNCTC 4 cut(s) 22, 54, 203, 235
BpmI CTGGAG 2 cut(s) 197, 427
BpuMI CCSGG 2 cut(s) 142, 153
BsaHI GRCGYC 2 cut(s) 17, 47
BsaJI CCNNGG 4 cut(s) 56, 141, 165, 344
Bsc4I CCNNNNNNNGG 4 cut(s) 13, 126, 593, 650
Bse1I ACTGG 1 cut(s) 410
Bse3DI GCAATG 1 cut(s) 617
BseBI CCWGG 1 cut(s) 594
BseDI CCNNGG 4 cut(s) 56, 141, 165, 344
BseLI CCNNNNNNNGG 4 cut(s) 13, 126, 593, 650
BseMI GCAATG 1 cut(s) 617
BseMII CTCAG 3 cut(s) 53, 99, 507
BseNI ACTGG 1 cut(s) 410
BseRI GAGGAG 2 cut(s) 182, 424
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 1 cut(s) 225
BshNI GGYRCC 1 cut(s) 16
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 183
BsiHKCI CYCGRG 3 cut(s) 164, 220, 323
BsiSI CCGG 2 cut(s) 141, 152
BslFI GGGAC 2 cut(s) 352, 548
BslI CCNNNNNNNGG 4 cut(s) 13, 126, 593, 650
BsmFI GGGAC 2 cut(s) 352, 548
BsmI GAATGC 1 cut(s) 522
BsnI GGCC 1 cut(s) 225
BsoBI CYCGRG 3 cut(s) 164, 220, 323
Bsp1286I GDGCHC 2 cut(s) 183, 324
Bsp143I GATC 6 cut(s) 121, 135, 285, 515, 571, 646
BspACI CCGC 2 cut(s) 590, 629
BspANI GGCC 1 cut(s) 225
BspCNI CTCAG 3 cut(s) 52, 100, 506
BspLI GGNNCC 3 cut(s) 18, 54, 298
BspOI GCTAGC 1 cut(s) 462
BspPI GGATC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 617
BsrI ACTGG 1 cut(s) 410
BssECI CCNNGG 4 cut(s) 56, 141, 165, 344
BssMI GATC 6 cut(s) 121, 135, 285, 515, 571, 646
BssNI GRCGYC 2 cut(s) 17, 47
BssT1I CCWWGG 1 cut(s) 344
Bst2UI CCWGG 1 cut(s) 594
Bst4CI ACNGT 1 cut(s) 541
BstACI GRCGYC 2 cut(s) 17, 47
BstC8I GCNNGC 3 cut(s) 90, 320, 460
BstDEI CTNAG 3 cut(s) 39, 108, 493
BstDSI CCRYGG 1 cut(s) 56
BstENI CCTNNNNNAGG 1 cut(s) 648
BstH2I RGCGCY 2 cut(s) 20, 95
BstHHI GCGC 2 cut(s) 19, 94
BstKTI GATC 6 cut(s) 124, 138, 288, 518, 574, 649
BstMBI GATC 6 cut(s) 121, 135, 285, 515, 571, 646
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 8 cut(s) 44, 85, 310, 319, 464, 566, 619, 628
BstNI CCWGG 1 cut(s) 594
BstSCI CCNGG 3 cut(s) 140, 151, 592
BstSFI CTRYAG 1 cut(s) 540
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
BsuI GTATCC 1 cut(s) 265
BsuRI GGCC 1 cut(s) 225
BtgI CCRYGG 1 cut(s) 56
BtsIMutI CAGTG 2 cut(s) 501, 537
Cac8I GCNNGC 3 cut(s) 90, 320, 460
CaiI CAGNNNCTG 1 cut(s) 94
CfoI GCGC 2 cut(s) 19, 94
Cfr13I GGNCC 2 cut(s) 223, 297
CseI GACGC 1 cut(s) 36
CspCI CAANNNNNGTGG 2 cut(s) 435, 470
CviAII CATG 2 cut(s) 314, 464
DdeI CTNAG 3 cut(s) 39, 108, 493
DinI GGCGCC 1 cut(s) 18
DpnI GATC 6 cut(s) 123, 137, 287, 517, 573, 648
DpnII GATC 6 cut(s) 121, 135, 285, 515, 571, 646
DraIII CACNNNGTG 1 cut(s) 205
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
EciI GGCGGA 1 cut(s) 579
Eco130I CCWWGG 1 cut(s) 344
Eco24I GRGCYC 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 297
Eco88I CYCGRG 3 cut(s) 164, 220, 323
EcoNI CCTNNNNNAGG 1 cut(s) 648
EcoRII CCWGG 1 cut(s) 592
EcoT14I CCWWGG 1 cut(s) 344
EcoT38I GRGCYC 1 cut(s) 324
EgeI GGCGCC 1 cut(s) 18
EheI GGCGCC 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 344
FaeI CATG 2 cut(s) 317, 467
FaiI YATR 5 cut(s) 35, 246, 315, 465, 533
FaqI GGGAC 2 cut(s) 352, 548
FatI CATG 2 cut(s) 313, 463
FbaI TGATCA 1 cut(s) 646
Fnu4HI GCNGC 1 cut(s) 629
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 1 cut(s) 629
FspBI CTAG 2 cut(s) 279, 459
GlaI GCGC 2 cut(s) 18, 93
GluI GCNGC 1 cut(s) 629
GsuI CTGGAG 2 cut(s) 197, 427
HaeII RGCGCY 2 cut(s) 20, 95
HaeIII GGCC 1 cut(s) 225
HapII CCGG 2 cut(s) 141, 152
HgaI GACGC 1 cut(s) 36
HhaI GCGC 2 cut(s) 19, 94
Hin1I GRCGYC 2 cut(s) 17, 47
Hin1II CATG 2 cut(s) 317, 467
Hin6I GCGC 2 cut(s) 17, 92
HinP1I GCGC 2 cut(s) 17, 92
HinfI GANTC 7 cut(s) 61, 160, 218, 228, 254, 340, 583
HpaII CCGG 2 cut(s) 141, 152
Hpy166II GTNNAC 2 cut(s) 60, 199
Hpy188I TCNGA 3 cut(s) 109, 285, 687
Hpy188III TCNNGA 5 cut(s) 164, 176, 200, 527, 671
Hpy8I GTNNAC 2 cut(s) 60, 199
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 328
HpyCH4III ACNGT 1 cut(s) 541
HpyCH4V TGCA 1 cut(s) 622
HpyF10VI GCNNNNNNNGC 8 cut(s) 44, 85, 310, 319, 464, 566, 619, 628
HpyF3I CTNAG 3 cut(s) 39, 108, 493
Hsp92I GRCGYC 2 cut(s) 17, 47
Hsp92II CATG 2 cut(s) 317, 467
HspAI GCGC 2 cut(s) 17, 92
KasI GGCGCC 1 cut(s) 16
Ksp22I TGATCA 1 cut(s) 646
Kzo9I GATC 6 cut(s) 121, 135, 285, 515, 571, 646
LmnI GCTCC 3 cut(s) 58, 178, 411
MaeI CTAG 2 cut(s) 279, 459
MaeIII GTNAC 2 cut(s) 433, 548
MalI GATC 6 cut(s) 123, 137, 287, 517, 573, 648
MboI GATC 6 cut(s) 121, 135, 285, 515, 571, 646
MboII GAAGA 2 cut(s) 343, 473
MflI RGATCY 1 cut(s) 285
MhlI GDGCHC 2 cut(s) 183, 324
MluCI AATT 2 cut(s) 375, 577
Mly113I GGCGCC 1 cut(s) 17
MlyI GAGTC 6 cut(s) 55, 154, 212, 237, 248, 334
MmeI TCCRAC 1 cut(s) 189
MspI CCGG 2 cut(s) 141, 152
MspR9I CCNGG 3 cut(s) 142, 153, 594
Mva1269I GAATGC 1 cut(s) 522
MvaI CCWGG 1 cut(s) 594
MwoI GCNNNNNNNGC 8 cut(s) 44, 85, 310, 319, 464, 566, 619, 628
NarI GGCGCC 1 cut(s) 17
NciI CCSGG 2 cut(s) 142, 153
NdeII GATC 6 cut(s) 121, 135, 285, 515, 571, 646
NheI GCTAGC 1 cut(s) 458
NlaIII CATG 2 cut(s) 317, 467
NlaIV GGNNCC 3 cut(s) 18, 54, 298
NmeAIII GCCGAG 2 cut(s) 251, 264
NmuCI GTSAC 1 cut(s) 433
PctI GAATGC 1 cut(s) 522
PfeI GAWTC 1 cut(s) 583
PkrI GCNGC 1 cut(s) 630
Ple19I CGATCG 1 cut(s) 124
PleI GAGTC 6 cut(s) 55, 154, 212, 236, 248, 334
PluTI GGCGCC 1 cut(s) 20
PpsI GAGTC 6 cut(s) 55, 154, 212, 236, 248, 334
Psp6I CCWGG 1 cut(s) 592
PspGI CCWGG 1 cut(s) 592
PspN4I GGNNCC 3 cut(s) 18, 54, 298
PspPI GGNCC 2 cut(s) 223, 297
PstNI CAGNNNCTG 1 cut(s) 94
PsuI RGATCY 1 cut(s) 285
PvuI CGATCG 1 cut(s) 124
SatI GCNGC 1 cut(s) 629
Sau3AI GATC 6 cut(s) 121, 135, 285, 515, 571, 646
Sau96I GGNCC 2 cut(s) 223, 297
SchI GAGTC 6 cut(s) 55, 154, 212, 237, 248, 334
ScrFI CCNGG 3 cut(s) 142, 153, 594
SduI GDGCHC 2 cut(s) 183, 324
SetI ASST 7 cut(s) 81, 104, 174, 306, 494, 562, 607
SfcI CTRYAG 1 cut(s) 540
SfoI GGCGCC 1 cut(s) 18
SinI GGWCC 1 cut(s) 297
Sse9I AATT 2 cut(s) 375, 577
SsiI CCGC 2 cut(s) 590, 629
SspDI GGCGCC 1 cut(s) 16
SspMI CTAG 2 cut(s) 279, 459
StyD4I CCNGG 3 cut(s) 140, 151, 592
StyI CCWWGG 1 cut(s) 344
TaaI ACNGT 1 cut(s) 541
TaqI TCGA 5 cut(s) 29, 69, 231, 419, 574
TasI AATT 2 cut(s) 375, 577
TauI GCSGC 1 cut(s) 631
TfiI GAWTC 1 cut(s) 583
TscAI CASTG 2 cut(s) 501, 544
TseFI GTSAC 1 cut(s) 433
Tsp45I GTSAC 1 cut(s) 433
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 2 cut(s) 501, 544
VpaK11BI GGWCC 1 cut(s) 297
XagI CCTNNNNNAGG 1 cut(s) 648
XspI CTAG 2 cut(s) 279, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.