RchiOBHm_Chr1g0338881
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0011264
Physical Location & Seq
Reverse (-)
30042734 .. 30044334
1601 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56589

Sequence Viewer

Length: 690 bp
ATGTTCCAGGAGGCGGCGCCGCCGTGTTGGCCGGCGGGGGTGAGTCAGTCGACGTCGTCGTCGGCGCGGTGGACTAGACCGGAGGACAAGCTGTTCGAGCAGGCGCTGGTGAGGTTCTCCGACGACTTGCCGGATCGGTGGGAGCGGATCGCCGAGATGGTGCCGGGGAAGAGCGCCGAGGAGGTTCTGGAGCACTATGAGACTCTGGTGCATGATGTTGTGGAGATTGACTCCGGCCGGGTCGAGTTGCGAGTTACGCTGATGACACGGTGGTCGGGTGGGACACGTCGAGTCAGATCTCTTTTGATGGTTGCAAGAATAACAATAATAGCGGCGGCGGCGGTGAGGCGGCCGAGAGGAAGAAGGGAAAGCCGTGGACTGAAATTGAACACAAAGTTATTGTTTCTGGTAGGACTAAAGCAATTTGGCAAGGGTGATTGGAGAAGCATTTCAAGAAATGTAGTTGTGACGAGAACACCCACACAAGTGGCTAGTCATGCTCAAAAATATTTCCTTCGCCAAAGCTCTGGGAAAAAGGAAAGGAAAAGATCAAGCATTCATGACATAACCTCAGTAGAGACAAACTCGGTGCCTGCGCCTGCTGAACGCAAGTGGATTCCTCCACCTCCACCTCCACCTGGTGATCAAGGTGGTTCATTTGGGTTTCCAGATTTTGGTTTTCCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

229

Amino Acids

25.76

Weight (kDa)

10.33

Isoelectric Point (pI)

62.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 23 - 69 2.9e-07 Myb-like DNA-binding domain
Myb_DNA-binding_2 PF23082 23 - 69 1.7e-06 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 134 - 171 4.4e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04760
fragaria_vesca FvH4_7g06630 FvH4_7g06630 FvH4_7g06630
malus_domestica MD02G1259300.v1.1 MD07G1061400.v1.1
prunus_persica Prupe.2G070600_v2.0.a1
pyrus_communis pycom02g22070 pycom07g04700
rosa_chinensis RchiOBHm_Chr1g0335311 RchiOBHm_Chr1g0338881
rosa_laevigata RLG00000029381
rosa_multiflora Rmu_sc0003404.1_g000004
rosa_roxburghii Rroxscaffold_4G00316000
rosa_rugosa Rorug01G0122400
rosa_samantha Rh1AG143500 Rh1BG112500 Rh1CG135100 Rh1DG149200
rosa_wichuraiana Rw0G009230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 58, 271
AatII GACGTC 1 cut(s) 56
AccB1I GGYRCC 3 cut(s) 16, 160, 589
AccB7I CCANNNNNTGG 1 cut(s) 674
AccBSI CCGCTC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 50
AccII CGCG 1 cut(s) 67
AclWI GGATC 2 cut(s) 141, 155
AcoI YGGCCR 3 cut(s) 29, 235, 350
AcyI GRCGYC 2 cut(s) 17, 53
AdeI CACNNNGTG 1 cut(s) 641
AfiI CCNNNNNNNGG 3 cut(s) 13, 638, 674
AflIII ACRYGT 1 cut(s) 284
AgsI TTSAA 2 cut(s) 388, 453
AjiI CACGTC 1 cut(s) 287
AjnI CCWGG 2 cut(s) 6, 637
AleI CACNNNNGTG 1 cut(s) 485
AloI GAACNNNNNNTCC 2 cut(s) 77, 109
AluBI AGCT 2 cut(s) 91, 525
AluI AGCT 2 cut(s) 91, 525
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 2 cut(s) 194, 572
AlwI GGATC 2 cut(s) 141, 155
AlwNI CAGNNNCTG 1 cut(s) 106
AoxI GGCC 3 cut(s) 29, 235, 350
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
Asp700I GAANNNNTTC 1 cut(s) 448
AspLEI GCGC 5 cut(s) 19, 67, 106, 176, 598
AsuC2I CCSGG 2 cut(s) 165, 239
AsuHPI GGTGA 5 cut(s) 52, 121, 355, 446, 653
BanI GGYRCC 3 cut(s) 16, 160, 589
Bbv12I GWGCWC 1 cut(s) 195
BccI CCATC 2 cut(s) 151, 301
BceAI ACGGC 2 cut(s) 7, 357
BciT130I CCWGG 2 cut(s) 8, 639
BclI TGATCA 1 cut(s) 643
BcnI CCSGG 2 cut(s) 165, 239
BcoDI GTCTC 2 cut(s) 194, 572
BfaI CTAG 2 cut(s) 75, 492
BfoI RGCGCY 3 cut(s) 20, 107, 177
BglI GCCNNNNNGGC 1 cut(s) 28
BglII AGATCT 1 cut(s) 296
BisI GCNGC 6 cut(s) 15, 20, 333, 336, 339, 350
BlsI GCNGC 6 cut(s) 16, 21, 334, 337, 340, 351
Bme1390I CCNGG 4 cut(s) 8, 165, 239, 639
BmgBI CACGTC 1 cut(s) 287
BmiI GGNNCC 3 cut(s) 18, 162, 591
BmrFI CCNGG 4 cut(s) 8, 165, 239, 639
BplI GAGNNNNNCTC 4 cut(s) 215, 247, 569, 601
BpmI CTGGAG 1 cut(s) 209
BpuMI CCSGG 2 cut(s) 165, 239
BsaHI GRCGYC 2 cut(s) 17, 53
BsaJI CCNNGG 3 cut(s) 164, 177, 373
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 638, 674
Bse118I RCCGGY 1 cut(s) 31
BseBI CCWGG 2 cut(s) 8, 639
BseDI CCNNGG 3 cut(s) 164, 177, 373
BseLI CCNNNNNNNGG 3 cut(s) 13, 638, 674
BseMII CTCAG 1 cut(s) 585
BseRI GAGGAG 1 cut(s) 194
BseX3I CGGCCG 2 cut(s) 235, 350
Bsh1236I CGCG 1 cut(s) 67
Bsh1285I CGRYCG 2 cut(s) 238, 353
BshFI GGCC 3 cut(s) 31, 237, 352
BshNI GGYRCC 3 cut(s) 16, 160, 589
BsiEI CGRYCG 2 cut(s) 238, 353
BsiHKAI GWGCWC 1 cut(s) 195
BsiSI CCGG 6 cut(s) 32, 80, 131, 164, 234, 238
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 3 cut(s) 13, 638, 674
BsmAI GTCTC 2 cut(s) 194, 572
BsmFI GGGAC 1 cut(s) 295
BsmI GAATGC 1 cut(s) 555
BsnI GGCC 3 cut(s) 31, 237, 352
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 5 cut(s) 133, 147, 296, 548, 643
BspANI GGCC 3 cut(s) 31, 237, 352
BspCNI CTCAG 1 cut(s) 584
BspFNI CGCG 1 cut(s) 67
BspHI TCATGA 1 cut(s) 559
BspLI GGNNCC 3 cut(s) 18, 162, 591
BspPI GGATC 2 cut(s) 141, 155
BspQI GCTCTTC 1 cut(s) 164
BspT107I GGYRCC 3 cut(s) 16, 160, 589
BsrBI CCGCTC 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 31
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 3 cut(s) 164, 177, 373
BssMI GATC 5 cut(s) 133, 147, 296, 548, 643
BssNI GRCGYC 2 cut(s) 17, 53
Bst2UI CCWGG 2 cut(s) 8, 639
Bst4CI ACNGT 1 cut(s) 270
Bst6I CTCTTC 1 cut(s) 164
BstACI GRCGYC 2 cut(s) 17, 53
BstC8I GCNNGC 4 cut(s) 33, 102, 594, 600
BstDEI CTNAG 1 cut(s) 571
BstDSI CCRYGG 1 cut(s) 373
BstFNI CGCG 1 cut(s) 67
BstH2I RGCGCY 3 cut(s) 20, 107, 177
BstHHI GCGC 5 cut(s) 19, 67, 106, 176, 598
BstKTI GATC 5 cut(s) 136, 150, 299, 551, 646
BstMAI GTCTC 2 cut(s) 194, 572
BstMBI GATC 5 cut(s) 133, 147, 296, 548, 643
BstMCI CGRYCG 2 cut(s) 238, 353
BstMWI GCNNNNNNNGC 5 cut(s) 28, 97, 256, 338, 497
BstNI CCWGG 2 cut(s) 8, 639
BstSCI CCNGG 4 cut(s) 6, 163, 237, 637
BstUI CGCG 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 296
BstXI CCANNNNNNTGG 2 cut(s) 487, 527
BstYI RGATCY 1 cut(s) 296
BstZI CGGCCG 2 cut(s) 235, 350
BsuRI GGCC 3 cut(s) 31, 237, 352
BtgI CCRYGG 1 cut(s) 373
BtrI CACGTC 1 cut(s) 287
Cac8I GCNNGC 4 cut(s) 33, 102, 594, 600
CaiI CAGNNNCTG 1 cut(s) 106
CciI TCATGA 1 cut(s) 559
CfoI GCGC 5 cut(s) 19, 67, 106, 176, 598
Cfr10I RCCGGY 1 cut(s) 31
CsiI ACCWGGT 1 cut(s) 637
CviAII CATG 3 cut(s) 212, 497, 560
CviJI RGCY 7 cut(s) 31, 91, 237, 352, 372, 491, 525
CviKI_1 RGCY 7 cut(s) 31, 91, 237, 352, 372, 491, 525
DdeI CTNAG 1 cut(s) 571
DinI GGCGCC 1 cut(s) 18
DpnI GATC 5 cut(s) 135, 149, 298, 550, 645
DpnII GATC 5 cut(s) 133, 147, 296, 548, 643
DraIII CACNNNGTG 1 cut(s) 641
DrdI GACNNNNNNGTC 2 cut(s) 58, 271
DseDI GACNNNNNNGTC 2 cut(s) 58, 271
EaeI YGGCCR 3 cut(s) 29, 235, 350
EagI CGGCCG 2 cut(s) 235, 350
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
EclXI CGGCCG 2 cut(s) 235, 350
Eco52I CGGCCG 2 cut(s) 235, 350
EcoRII CCWGG 2 cut(s) 6, 637
EgeI GGCGCC 1 cut(s) 18
EheI GGCGCC 1 cut(s) 18
FaeI CATG 3 cut(s) 215, 500, 563
FaiI YATR 5 cut(s) 198, 213, 498, 561, 566
FaqI GGGAC 1 cut(s) 295
FatI CATG 3 cut(s) 211, 496, 559
FauI CCCGC 1 cut(s) 28
FbaI TGATCA 1 cut(s) 643
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 6 cut(s) 15, 20, 333, 336, 339, 350
Fsp4HI GCNGC 6 cut(s) 15, 20, 333, 336, 339, 350
FspBI CTAG 2 cut(s) 75, 492
GlaI GCGC 5 cut(s) 18, 66, 105, 175, 597
GluI GCNGC 6 cut(s) 15, 20, 333, 336, 339, 350
GsuI CTGGAG 1 cut(s) 209
HaeII RGCGCY 3 cut(s) 20, 107, 177
HaeIII GGCC 3 cut(s) 31, 237, 352
HapII CCGG 6 cut(s) 32, 80, 131, 164, 234, 238
HhaI GCGC 5 cut(s) 19, 67, 106, 176, 598
Hin1I GRCGYC 2 cut(s) 17, 53
Hin1II CATG 3 cut(s) 215, 500, 563
Hin6I GCGC 5 cut(s) 17, 65, 104, 174, 596
HinP1I GCGC 5 cut(s) 17, 65, 104, 174, 596
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 5 cut(s) 43, 202, 230, 291, 616
HpaII CCGG 6 cut(s) 32, 80, 131, 164, 234, 238
HphI GGTGA 5 cut(s) 52, 121, 355, 446, 653
Hpy166II GTNNAC 3 cut(s) 51, 72, 377
Hpy188I TCNGA 2 cut(s) 121, 296
Hpy188III TCNNGA 4 cut(s) 188, 453, 560, 668
Hpy8I GTNNAC 3 cut(s) 51, 72, 377
Hpy99I CGWCG 6 cut(s) 55, 58, 61, 64, 125, 291
HpyAV CCTTC 2 cut(s) 357, 524
HpyCH4III ACNGT 1 cut(s) 270
HpyCH4IV ACGT 2 cut(s) 53, 286
HpyCH4V TGCA 2 cut(s) 211, 314
HpyF10VI GCNNNNNNNGC 5 cut(s) 28, 97, 256, 338, 497
HpyF3I CTNAG 1 cut(s) 571
HpySE526I ACGT 2 cut(s) 53, 286
Hsp92I GRCGYC 2 cut(s) 17, 53
Hsp92II CATG 3 cut(s) 215, 500, 563
HspAI GCGC 5 cut(s) 17, 65, 104, 174, 596
KasI GGCGCC 1 cut(s) 16
KroI GCCGGC 1 cut(s) 31
KroNI GCCGGC 1 cut(s) 33
Ksp22I TGATCA 1 cut(s) 643
Kzo9I GATC 5 cut(s) 133, 147, 296, 548, 643
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 2 cut(s) 142, 190
MabI ACCWGGT 1 cut(s) 637
MaeI CTAG 2 cut(s) 75, 492
MaeII ACGT 2 cut(s) 53, 286
MaeIII GTNAC 2 cut(s) 253, 466
MalI GATC 5 cut(s) 135, 149, 298, 550, 645
MbiI CCGCTC 1 cut(s) 145
MboI GATC 5 cut(s) 133, 147, 296, 548, 643
MboII GAAGA 2 cut(s) 181, 372
MflI RGATCY 1 cut(s) 296
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 2 cut(s) 383, 422
Mly113I GGCGCC 1 cut(s) 17
MlyI GAGTC 4 cut(s) 52, 196, 224, 300
MmeI TCCRAC 1 cut(s) 144
MroNI GCCGGC 1 cut(s) 31
MroXI GAANNNNTTC 1 cut(s) 448
MslI CAYNNNNRTG 1 cut(s) 485
MspI CCGG 6 cut(s) 32, 80, 131, 164, 234, 238
MspR9I CCNGG 4 cut(s) 8, 165, 239, 639
Mva1269I GAATGC 1 cut(s) 555
MvaI CCWGG 2 cut(s) 8, 639
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 5 cut(s) 28, 97, 256, 338, 497
NaeI GCCGGC 1 cut(s) 33
NarI GGCGCC 1 cut(s) 17
NciI CCSGG 2 cut(s) 165, 239
NdeII GATC 5 cut(s) 133, 147, 296, 548, 643
NgoMIV GCCGGC 1 cut(s) 31
NlaIII CATG 3 cut(s) 215, 500, 563
NlaIV GGNNCC 3 cut(s) 18, 162, 591
NmeAIII GCCGAG 3 cut(s) 178, 202, 378
NmuCI GTSAC 1 cut(s) 466
OliI CACNNNNGTG 1 cut(s) 485
PagI TCATGA 1 cut(s) 559
PciSI GCTCTTC 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PctI GAATGC 1 cut(s) 555
PdiI GCCGGC 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 448
PfeI GAWTC 1 cut(s) 616
PflFI GACNNNGTC 1 cut(s) 55
PflMI CCANNNNNTGG 1 cut(s) 674
PfoI TCCNGGA 1 cut(s) 6
PkrI GCNGC 6 cut(s) 16, 21, 334, 337, 340, 351
PleI GAGTC 4 cut(s) 51, 196, 224, 299
PluTI GGCGCC 1 cut(s) 20
PpsI GAGTC 4 cut(s) 51, 196, 224, 299
Psp6I CCWGG 2 cut(s) 6, 637
PspGI CCWGG 2 cut(s) 6, 637
PspN4I GGNNCC 3 cut(s) 18, 162, 591
PstNI CAGNNNCTG 1 cut(s) 106
PsuI RGATCY 1 cut(s) 296
PsyI GACNNNGTC 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 485
SalI GTCGAC 1 cut(s) 49
SapI GCTCTTC 1 cut(s) 164
SatI GCNGC 6 cut(s) 15, 20, 333, 336, 339, 350
Sau3AI GATC 5 cut(s) 133, 147, 296, 548, 643
SchI GAGTC 4 cut(s) 52, 196, 224, 300
ScrFI CCNGG 4 cut(s) 8, 165, 239, 639
SduI GDGCHC 1 cut(s) 195
SexAI ACCWGGT 1 cut(s) 637
SfoI GGCGCC 1 cut(s) 18
SmiMI CAYNNNNRTG 1 cut(s) 485
Sse9I AATT 2 cut(s) 383, 422
SspDI GGCGCC 1 cut(s) 16
SspI AATATT 1 cut(s) 509
SspMI CTAG 2 cut(s) 75, 492
StyD4I CCNGG 4 cut(s) 6, 163, 237, 637
TaaI ACNGT 1 cut(s) 270
TaiI ACGT 2 cut(s) 56, 289
TaqI TCGA 4 cut(s) 50, 96, 243, 289
TasI AATT 2 cut(s) 383, 422
TauI GCSGC 6 cut(s) 17, 22, 335, 338, 341, 352
TfiI GAWTC 1 cut(s) 616
TseFI GTSAC 1 cut(s) 466
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 2 cut(s) 548, 645
Tth111I GACNNNGTC 1 cut(s) 55
Van91I CCANNNNNTGG 1 cut(s) 674
XmiI GTMKAC 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 448
XspI CTAG 2 cut(s) 75, 492
ZraI GACGTC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.