pycom07g04700
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0011264
Physical Location & Seq
Reverse (-)
4023245 .. 4025163
1919 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g04700.1

Sequence Viewer

Length: 750 bp
ATGTCCAAGAAACCAAACAAAAAACAACAAAAACCCGAAAAAACCCCAAGCCCGCGAATGTTCCAAGAAACGGCCCCGTGTTGGTCGGACGTGGCTCAGTCGGCGGCGTCGGCTCCGTGGACTCGGTTTGAAGACAAGCTGTTTGAGCAGGCGCTGGTCAGGTTCTCCGACGACTTGCCCGATCGGTGGGAGAGGATCGCCCAAGAGCTACCGGGCAAGACTCCTAAAGAGGTTTTGGAGCACTACGAGGATTTGGTGCACGATGTCTTGGAGATCGATTCCGGCCGGGTCAATTTGCCGAGTTATGCTGATGAGTGCTGGGACACGGCCGGTCAGATCACTTTTGGGTCCAAGGTCAATAAGCATGGCGAGCCTGAGAGGAAGAAGGGAACTCCTTGGACTCCACAAGAACACAAGTTATTTCTAATCGGACTAAAAAAGTTTGGTAGGGGCGACTGGAGGAGCATTTCAAGAAATGTGGTTGTGACAAGAACACCAACCCAAGTAGCAAGCCATGCCCAGAAGTATTTCCTTCGCCAAAGCTCAGTGAAAAAGGAAAGGAAAAGATCGATCATTCACGACATAACCACTGTAGAGAGTAACTCGGTACCAGTGCCTGCTGATCGCAATTGGATTCCTCCACCTGCAGATCCGACTCATCAGTCTCCATTGCAACAGTTGACCCCGCAGAGTCGTGTGCCTGATCAGGGGGGTTTGTTGGGGTACCAAGACTTCGGCTATCCGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

250

Amino Acids

28.44

Weight (kDa)

8.95

Isoelectric Point (pI)

59.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 39 - 83 1.2e-07 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 132 - 177 7.8e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04760
fragaria_vesca FvH4_7g06630 FvH4_7g06630 FvH4_7g06630
malus_domestica MD02G1259300.v1.1 MD07G1061400.v1.1
prunus_persica Prupe.2G070600_v2.0.a1
pyrus_communis pycom02g22070 pycom07g04700
rosa_chinensis RchiOBHm_Chr1g0335311 RchiOBHm_Chr1g0338881
rosa_laevigata RLG00000029381
rosa_multiflora Rmu_sc0003404.1_g000004
rosa_roxburghii Rroxscaffold_4G00316000
rosa_rugosa Rorug01G0122400
rosa_samantha Rh1AG143500 Rh1BG112500 Rh1CG135100 Rh1DG149200
rosa_wichuraiana Rw0G009230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 652
AasI GACNNNNNNGTC 1 cut(s) 661
Acc36I ACCTGC 1 cut(s) 652
Acc65I GGTACC 2 cut(s) 607, 723
AccB1I GGYRCC 2 cut(s) 607, 723
AccII CGCG 1 cut(s) 55
AciI CCGC 3 cut(s) 53, 104, 686
AclWI GGATC 2 cut(s) 203, 644
AcoI YGGCCR 2 cut(s) 283, 327
AcyI GRCGYC 1 cut(s) 107
AfaI GTAC 2 cut(s) 609, 725
AfiI CCNNNNNNNGG 4 cut(s) 70, 81, 186, 707
AgsI TTSAA 2 cut(s) 131, 471
AjiI CACGTC 1 cut(s) 91
AluBI AGCT 3 cut(s) 139, 208, 543
AluI AGCT 3 cut(s) 139, 208, 543
Alw21I GWGCWC 2 cut(s) 243, 261
Alw26I GTCTC 1 cut(s) 669
Alw44I GTGCAC 1 cut(s) 257
AlwI GGATC 2 cut(s) 203, 644
AlwNI CAGNNNCTG 2 cut(s) 154, 617
AoxI GGCC 3 cut(s) 72, 283, 327
ApaLI GTGCAC 1 cut(s) 257
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
Asp700I GAANNNNTTC 1 cut(s) 527
Asp718I GGTACC 2 cut(s) 607, 723
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 2 cut(s) 73, 348
AsuC2I CCSGG 2 cut(s) 213, 287
AvaII GGWCC 1 cut(s) 348
BaeGI GKGCMC 1 cut(s) 261
BanI GGYRCC 2 cut(s) 607, 723
BarI GAAGNNNNNNTAC 2 cut(s) 716, 748
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 2 cut(s) 243, 261
BceAI ACGGC 2 cut(s) 87, 342
BclI TGATCA 1 cut(s) 703
BcnI CCSGG 2 cut(s) 213, 287
BcoDI GTCTC 1 cut(s) 669
BfmI CTRYAG 2 cut(s) 591, 645
BfoI RGCGCY 1 cut(s) 155
BfuAI ACCTGC 1 cut(s) 652
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme1390I CCNGG 2 cut(s) 213, 287
Bme18I GGWCC 1 cut(s) 348
BmgBI CACGTC 1 cut(s) 91
BmgT120I GGNCC 2 cut(s) 73, 348
BmiI GGNNCC 5 cut(s) 75, 114, 349, 609, 725
BmrFI CCNGG 2 cut(s) 213, 287
BpiI GAAGAC 1 cut(s) 138
BplI GAGNNNNNCTC 2 cut(s) 587, 619
BpmI CTGGAG 1 cut(s) 478
BpuMI CCSGG 2 cut(s) 213, 287
Bsa29I ATCGAT 2 cut(s) 276, 569
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 3 cut(s) 116, 351, 395
Bsc4I CCNNNNNNNGG 4 cut(s) 70, 81, 186, 707
Bse118I RCCGGY 1 cut(s) 329
Bse1I ACTGG 2 cut(s) 461, 611
Bse3DI GCAATG 1 cut(s) 668
BseCI ATCGAT 2 cut(s) 276, 569
BseDI CCNNGG 3 cut(s) 116, 351, 395
BseLI CCNNNNNNNGG 4 cut(s) 70, 81, 186, 707
BseMI GCAATG 1 cut(s) 668
BseMII CTCAG 3 cut(s) 110, 366, 558
BseNI ACTGG 2 cut(s) 461, 611
BseRI GAGGAG 1 cut(s) 475
BseSI GKGCMC 1 cut(s) 261
BseX3I CGGCCG 2 cut(s) 283, 327
BseYI CCCAGC 1 cut(s) 318
Bsh1236I CGCG 1 cut(s) 55
Bsh1285I CGRYCG 3 cut(s) 184, 286, 330
BshFI GGCC 3 cut(s) 74, 285, 329
BshNI GGYRCC 2 cut(s) 607, 723
BshVI ATCGAT 2 cut(s) 276, 569
BsiEI CGRYCG 3 cut(s) 184, 286, 330
BsiHKAI GWGCWC 2 cut(s) 243, 261
BsiSI CCGG 4 cut(s) 212, 282, 286, 330
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 4 cut(s) 70, 81, 186, 707
BsmAI GTCTC 1 cut(s) 669
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 3 cut(s) 74, 285, 329
Bsp1286I GDGCHC 2 cut(s) 243, 261
Bsp143I GATC 9 cut(s) 181, 195, 273, 336, 566, 570, 622, 649, 703
BspACI CCGC 3 cut(s) 53, 104, 686
BspANI GGCC 3 cut(s) 74, 285, 329
BspCNI CTCAG 3 cut(s) 109, 367, 557
BspDI ATCGAT 2 cut(s) 276, 569
BspFNI CGCG 1 cut(s) 55
BspLI GGNNCC 5 cut(s) 75, 114, 349, 609, 725
BspMAI CTGCAG 1 cut(s) 649
BspMI ACCTGC 1 cut(s) 652
BspPI GGATC 2 cut(s) 203, 644
BspT107I GGYRCC 2 cut(s) 607, 723
BsrDI GCAATG 1 cut(s) 668
BsrFI RCCGGY 1 cut(s) 329
BsrI ACTGG 2 cut(s) 461, 611
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 3 cut(s) 116, 351, 395
BssMI GATC 9 cut(s) 181, 195, 273, 336, 566, 570, 622, 649, 703
BssNI GRCGYC 1 cut(s) 107
BssT1I CCWWGG 2 cut(s) 351, 395
Bst4CI ACNGT 2 cut(s) 592, 678
BstACI GRCGYC 1 cut(s) 107
BstAPI GCANNNNNTGC 1 cut(s) 515
BstC8I GCNNGC 5 cut(s) 53, 150, 371, 511, 618
BstDEI CTNAG 3 cut(s) 96, 375, 544
BstDSI CCRYGG 1 cut(s) 116
BstFNI CGCG 1 cut(s) 55
BstH2I RGCGCY 1 cut(s) 155
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 9 cut(s) 184, 198, 276, 339, 569, 573, 625, 652, 706
BstMAI GTCTC 1 cut(s) 669
BstMBI GATC 9 cut(s) 181, 195, 273, 336, 566, 570, 622, 649, 703
BstMCI CGRYCG 3 cut(s) 184, 286, 330
BstMWI GCNNNNNNNGC 5 cut(s) 101, 110, 145, 370, 515
BstSCI CCNGG 2 cut(s) 211, 285
BstSFI CTRYAG 2 cut(s) 591, 645
BstSLI GKGCMC 1 cut(s) 261
BstUI CGCG 1 cut(s) 55
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 649
BstYI RGATCY 1 cut(s) 649
BstZI CGGCCG 2 cut(s) 283, 327
Bsu15I ATCGAT 2 cut(s) 276, 569
BsuRI GGCC 3 cut(s) 74, 285, 329
BsuTUI ATCGAT 2 cut(s) 276, 569
BtgI CCRYGG 1 cut(s) 116
BtrI CACGTC 1 cut(s) 91
BtsIMutI CAGTG 3 cut(s) 552, 588, 618
BveI ACCTGC 1 cut(s) 652
Cac8I GCNNGC 5 cut(s) 53, 150, 371, 511, 618
CaiI CAGNNNCTG 2 cut(s) 154, 617
CfoI GCGC 1 cut(s) 154
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 2 cut(s) 73, 348
ClaI ATCGAT 2 cut(s) 276, 569
CseI GACGC 1 cut(s) 96
Csp6I GTAC 2 cut(s) 608, 724
CspCI CAANNNNNGTGG 2 cut(s) 459, 494
CviAII CATG 2 cut(s) 365, 515
CviQI GTAC 2 cut(s) 608, 724
DdeI CTNAG 3 cut(s) 96, 375, 544
DpnI GATC 9 cut(s) 183, 197, 275, 338, 568, 572, 624, 651, 705
DpnII GATC 9 cut(s) 181, 195, 273, 336, 566, 570, 622, 649, 703
DrdI GACNNNNNNGTC 1 cut(s) 661
DseDI GACNNNNNNGTC 1 cut(s) 661
EaeI YGGCCR 2 cut(s) 283, 327
EagI CGGCCG 2 cut(s) 283, 327
EclXI CGGCCG 2 cut(s) 283, 327
Eco130I CCWWGG 2 cut(s) 351, 395
Eco47I GGWCC 1 cut(s) 348
Eco52I CGGCCG 2 cut(s) 283, 327
EcoT14I CCWWGG 2 cut(s) 351, 395
ErhI CCWWGG 2 cut(s) 351, 395
FaeI CATG 2 cut(s) 368, 518
FaiI YATR 4 cut(s) 306, 366, 516, 584
FaqI GGGAC 1 cut(s) 335
FatI CATG 2 cut(s) 364, 514
FauI CCCGC 2 cut(s) 60, 693
FbaI TGATCA 1 cut(s) 703
Fnu4HI GCNGC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 105
GlaI GCGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 105
GsaI CCCAGC 1 cut(s) 322
GsuI CTGGAG 1 cut(s) 478
HaeII RGCGCY 1 cut(s) 155
HaeIII GGCC 3 cut(s) 74, 285, 329
HapII CCGG 4 cut(s) 212, 282, 286, 330
HgaI GACGC 1 cut(s) 96
HhaI GCGC 1 cut(s) 154
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 2 cut(s) 368, 518
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HincII GTYRAC 1 cut(s) 681
HindII GTYRAC 1 cut(s) 681
HinfI GANTC 7 cut(s) 121, 220, 278, 400, 634, 655, 691
HpaII CCGG 4 cut(s) 212, 282, 286, 330
Hpy166II GTNNAC 3 cut(s) 120, 259, 681
Hpy188I TCNGA 6 cut(s) 88, 169, 336, 431, 654, 744
Hpy188III TCNNGA 2 cut(s) 471, 578
Hpy8I GTNNAC 3 cut(s) 120, 259, 681
Hpy99I CGWCG 2 cut(s) 112, 173
HpyAV CCTTC 2 cut(s) 379, 542
HpyCH4III ACNGT 2 cut(s) 592, 678
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 3 cut(s) 259, 647, 673
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 110, 145, 370, 515
HpyF3I CTNAG 3 cut(s) 96, 375, 544
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 2 cut(s) 368, 518
HspAI GCGC 1 cut(s) 152
KpnI GGTACC 2 cut(s) 611, 727
Ksp22I TGATCA 1 cut(s) 703
Kzo9I GATC 9 cut(s) 181, 195, 273, 336, 566, 570, 622, 649, 703
LmnI GCTCC 3 cut(s) 118, 238, 462
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 2 cut(s) 484, 599
MalI GATC 9 cut(s) 183, 197, 275, 338, 568, 572, 624, 651, 705
MboI GATC 9 cut(s) 181, 195, 273, 336, 566, 570, 622, 649, 703
MboII GAAGA 2 cut(s) 143, 394
MfeI CAATTG 1 cut(s) 628
MflI RGATCY 1 cut(s) 649
MhlI GDGCHC 2 cut(s) 243, 261
MluCI AATT 2 cut(s) 292, 628
MlyI GAGTC 5 cut(s) 115, 214, 394, 649, 700
MmeI TCCRAC 3 cut(s) 66, 192, 677
MnlI CCTC 6 cut(s) 186, 223, 241, 372, 453, 648
MroXI GAANNNNTTC 1 cut(s) 527
MspI CCGG 4 cut(s) 212, 282, 286, 330
MspR9I CCNGG 2 cut(s) 213, 287
MunI CAATTG 1 cut(s) 628
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 5 cut(s) 101, 110, 145, 370, 515
NciI CCSGG 2 cut(s) 213, 287
NdeII GATC 9 cut(s) 181, 195, 273, 336, 566, 570, 622, 649, 703
NlaIII CATG 2 cut(s) 368, 518
NlaIV GGNNCC 5 cut(s) 75, 114, 349, 609, 725
NmeAIII GCCGAG 1 cut(s) 324
NmuCI GTSAC 1 cut(s) 484
PaqCI CACCTGC 1 cut(s) 652
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 527
PfeI GAWTC 2 cut(s) 278, 634
PkrI GCNGC 1 cut(s) 106
Ple19I CGATCG 1 cut(s) 184
PleI GAGTC 5 cut(s) 115, 214, 394, 649, 699
PpsI GAGTC 5 cut(s) 115, 214, 394, 649, 699
PspFI CCCAGC 1 cut(s) 318
PspN4I GGNNCC 5 cut(s) 75, 114, 349, 609, 725
PspPI GGNCC 2 cut(s) 73, 348
PstI CTGCAG 1 cut(s) 649
PstNI CAGNNNCTG 2 cut(s) 154, 617
PsuI RGATCY 1 cut(s) 649
PvuI CGATCG 1 cut(s) 184
RsaI GTAC 2 cut(s) 609, 725
RsaNI GTAC 2 cut(s) 608, 724
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 9 cut(s) 181, 195, 273, 336, 566, 570, 622, 649, 703
Sau96I GGNCC 2 cut(s) 73, 348
SchI GAGTC 5 cut(s) 115, 214, 394, 649, 700
ScrFI CCNGG 2 cut(s) 213, 287
SduI GDGCHC 2 cut(s) 243, 261
SetI ASST 8 cut(s) 93, 141, 164, 210, 234, 357, 545, 646
SfcI CTRYAG 2 cut(s) 591, 645
SinI GGWCC 1 cut(s) 348
Sse9I AATT 2 cut(s) 292, 628
SsiI CCGC 3 cut(s) 53, 104, 686
StyD4I CCNGG 2 cut(s) 211, 285
StyI CCWWGG 2 cut(s) 351, 395
TaaI ACNGT 2 cut(s) 592, 678
TaiI ACGT 1 cut(s) 93
TaqI TCGA 2 cut(s) 276, 569
TasI AATT 2 cut(s) 292, 628
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 2 cut(s) 278, 634
TscAI CASTG 3 cut(s) 552, 595, 618
TseFI GTSAC 1 cut(s) 484
Tsp45I GTSAC 1 cut(s) 484
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 3 cut(s) 552, 595, 618
VneI GTGCAC 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 348
XmnI GAANNNNTTC 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.