Rw0G009230
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00361
OG0011264
Physical Location & Seq
Forward (+)
69290 .. 71651
2362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G009230.1

Sequence Viewer

Length: 537 bp
ATGGTGCCGGGGAAGAGCGCCGAGGAGGTTCTCGAGCACTATGAGACTCTGGTGCATGATGTTGTGGAGATTGACTCCGGCCGGGTCGAGTTGCCGAGTTACGCTGATGACTCGGTGGTCGGGTGGGACACGTCGAGTCAGATCTCTTTTGATGGTTGCAAGAATAACAATAATAACGGCGGCGGCGGTGAGGCGGCCGAGAGGAAGAAGGGAAAGCCGTGGACTGAAATTGAACACAAATTGTTTCTGGTAGGACTAAAGCAATTTGGCAAGGGTGATTGGAGAAGCATTTCAAGAAATGTAGTTGTGACGAGAACACCCACACAAGTGGCTAGTCATGCTCAAAAATATTTCCTTCGCCAAAGCTCGGGGAAAAAGGAGAGGAAAAGATCAAGCATTCATGACATAACCTCAGTAGAGACAAACTCGGTGCCTGCGCCTGCTGAACGCAAGTGGATTCCTCCACCTCCACCTCCACCTCCACCTGGTGATCAAGGTGGTTCATTTGCGTTTCCAGATTTTGGTTTTCCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

178

Amino Acids

19.57

Weight (kDa)

6.97

Isoelectric Point (pI)

53.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 72 - 118 8.7e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04760
fragaria_vesca FvH4_7g06630 FvH4_7g06630 FvH4_7g06630
malus_domestica MD02G1259300.v1.1 MD07G1061400.v1.1
prunus_persica Prupe.2G070600_v2.0.a1
pyrus_communis pycom02g22070 pycom07g04700
rosa_chinensis RchiOBHm_Chr1g0335311 RchiOBHm_Chr1g0338881
rosa_laevigata RLG00000029381
rosa_multiflora Rmu_sc0003404.1_g000004
rosa_roxburghii Rroxscaffold_4G00316000
rosa_rugosa Rorug01G0122400
rosa_samantha Rh1AG143500 Rh1BG112500 Rh1CG135100 Rh1DG149200
rosa_wichuraiana Rw0G009230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AccB1I GGYRCC 2 cut(s) 4, 430
AccB7I CCANNNNNTGG 1 cut(s) 521
AciI CCGC 4 cut(s) 180, 183, 186, 194
AcoI YGGCCR 2 cut(s) 79, 195
AdeI CACNNNGTG 1 cut(s) 488
AfiI CCNNNNNNNGG 3 cut(s) 367, 485, 521
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 2 cut(s) 233, 294
AjiI CACGTC 1 cut(s) 132
AjnI CCWGG 1 cut(s) 484
AleI CACNNNNGTG 1 cut(s) 326
AluBI AGCT 1 cut(s) 366
AluI AGCT 1 cut(s) 366
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 2 cut(s) 38, 413
Ama87I CYCGRG 2 cut(s) 32, 367
AoxI GGCC 2 cut(s) 79, 195
Asp700I GAANNNNTTC 1 cut(s) 289
AspLEI GCGC 2 cut(s) 20, 439
AsuC2I CCSGG 2 cut(s) 9, 83
AsuHPI GGTGA 3 cut(s) 200, 287, 500
AvaI CYCGRG 2 cut(s) 32, 367
BanI GGYRCC 2 cut(s) 4, 430
Bbv12I GWGCWC 1 cut(s) 39
BccI CCATC 1 cut(s) 146
BceAI ACGGC 2 cut(s) 193, 202
BciT130I CCWGG 1 cut(s) 486
BclI TGATCA 1 cut(s) 490
BcnI CCSGG 2 cut(s) 9, 83
BcoDI GTCTC 2 cut(s) 38, 413
BfaI CTAG 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 21
BglII AGATCT 1 cut(s) 141
BisI GCNGC 3 cut(s) 181, 184, 195
BlsI GCNGC 3 cut(s) 182, 185, 196
Bme1390I CCNGG 3 cut(s) 9, 83, 486
BmeT110I CYCGRG 2 cut(s) 32, 367
BmgBI CACGTC 1 cut(s) 132
BmiI GGNNCC 2 cut(s) 6, 432
BmrFI CCNGG 3 cut(s) 9, 83, 486
BplI GAGNNNNNCTC 4 cut(s) 59, 91, 410, 442
BpuMI CCSGG 2 cut(s) 9, 83
BsaJI CCNNGG 3 cut(s) 8, 21, 218
Bsc4I CCNNNNNNNGG 3 cut(s) 367, 485, 521
BseBI CCWGG 1 cut(s) 486
BseDI CCNNGG 3 cut(s) 8, 21, 218
BseLI CCNNNNNNNGG 3 cut(s) 367, 485, 521
BseMII CTCAG 1 cut(s) 426
BseRI GAGGAG 1 cut(s) 38
BseX3I CGGCCG 2 cut(s) 79, 195
Bsh1285I CGRYCG 2 cut(s) 82, 198
BshFI GGCC 2 cut(s) 81, 197
BshNI GGYRCC 2 cut(s) 4, 430
BsiEI CGRYCG 2 cut(s) 82, 198
BsiHKAI GWGCWC 1 cut(s) 39
BsiHKCI CYCGRG 2 cut(s) 32, 367
BsiSI CCGG 3 cut(s) 8, 78, 82
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 3 cut(s) 367, 485, 521
BsmAI GTCTC 2 cut(s) 38, 413
BsmFI GGGAC 1 cut(s) 140
BsmI GAATGC 1 cut(s) 396
BsnI GGCC 2 cut(s) 81, 197
BsoBI CYCGRG 2 cut(s) 32, 367
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 3 cut(s) 141, 389, 490
BspACI CCGC 4 cut(s) 180, 183, 186, 194
BspANI GGCC 2 cut(s) 81, 197
BspCNI CTCAG 1 cut(s) 425
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 2 cut(s) 6, 432
BspQI GCTCTTC 1 cut(s) 8
BspT107I GGYRCC 2 cut(s) 4, 430
BssECI CCNNGG 3 cut(s) 8, 21, 218
BssMI GATC 3 cut(s) 141, 389, 490
Bst2UI CCWGG 1 cut(s) 486
Bst6I CTCTTC 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 435, 441
BstDEI CTNAG 1 cut(s) 412
BstDSI CCRYGG 1 cut(s) 218
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 2 cut(s) 20, 439
BstKTI GATC 3 cut(s) 144, 392, 493
BstMAI GTCTC 2 cut(s) 38, 413
BstMBI GATC 3 cut(s) 141, 389, 490
BstMCI CGRYCG 2 cut(s) 82, 198
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstNI CCWGG 1 cut(s) 486
BstSCI CCNGG 3 cut(s) 7, 81, 484
BstX2I RGATCY 1 cut(s) 141
BstXI CCANNNNNNTGG 1 cut(s) 328
BstYI RGATCY 1 cut(s) 141
BstZI CGGCCG 2 cut(s) 79, 195
BsuRI GGCC 2 cut(s) 81, 197
BtgI CCRYGG 1 cut(s) 218
BtrI CACGTC 1 cut(s) 132
Cac8I GCNNGC 2 cut(s) 435, 441
CciI TCATGA 1 cut(s) 400
CfoI GCGC 2 cut(s) 20, 439
CsiI ACCWGGT 1 cut(s) 484
CviAII CATG 3 cut(s) 56, 338, 401
CviJI RGCY 5 cut(s) 81, 197, 217, 332, 366
CviKI_1 RGCY 5 cut(s) 81, 197, 217, 332, 366
DdeI CTNAG 1 cut(s) 412
DpnI GATC 3 cut(s) 143, 391, 492
DpnII GATC 3 cut(s) 141, 389, 490
DraIII CACNNNGTG 1 cut(s) 488
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
EaeI YGGCCR 2 cut(s) 79, 195
EagI CGGCCG 2 cut(s) 79, 195
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
EclXI CGGCCG 2 cut(s) 79, 195
Eco52I CGGCCG 2 cut(s) 79, 195
Eco88I CYCGRG 2 cut(s) 32, 367
EcoRII CCWGG 1 cut(s) 484
FaeI CATG 3 cut(s) 59, 341, 404
FaiI YATR 5 cut(s) 42, 57, 339, 402, 407
FaqI GGGAC 1 cut(s) 140
FatI CATG 3 cut(s) 55, 337, 400
FbaI TGATCA 1 cut(s) 490
Fnu4HI GCNGC 3 cut(s) 181, 184, 195
Fsp4HI GCNGC 3 cut(s) 181, 184, 195
FspBI CTAG 1 cut(s) 333
GlaI GCGC 2 cut(s) 19, 438
GluI GCNGC 3 cut(s) 181, 184, 195
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 2 cut(s) 81, 197
HapII CCGG 3 cut(s) 8, 78, 82
HhaI GCGC 2 cut(s) 20, 439
Hin1II CATG 3 cut(s) 59, 341, 404
Hin6I GCGC 2 cut(s) 18, 437
HinP1I GCGC 2 cut(s) 18, 437
HinfI GANTC 5 cut(s) 46, 74, 110, 136, 457
HpaII CCGG 3 cut(s) 8, 78, 82
HphI GGTGA 3 cut(s) 200, 287, 500
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 1 cut(s) 141
Hpy188III TCNNGA 4 cut(s) 32, 294, 401, 515
Hpy8I GTNNAC 1 cut(s) 222
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 2 cut(s) 202, 365
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 2 cut(s) 55, 159
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
HpyF3I CTNAG 1 cut(s) 412
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 3 cut(s) 59, 341, 404
HspAI GCGC 2 cut(s) 18, 437
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 3 cut(s) 141, 389, 490
LguI GCTCTTC 1 cut(s) 8
MabI ACCWGGT 1 cut(s) 484
MaeI CTAG 1 cut(s) 333
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 2 cut(s) 98, 307
MalI GATC 3 cut(s) 143, 391, 492
MboI GATC 3 cut(s) 141, 389, 490
MboII GAAGA 2 cut(s) 25, 217
MflI RGATCY 1 cut(s) 141
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 3 cut(s) 228, 239, 263
MlyI GAGTC 4 cut(s) 40, 68, 104, 145
MroXI GAANNNNTTC 1 cut(s) 289
MslI CAYNNNNRTG 1 cut(s) 326
MspI CCGG 3 cut(s) 8, 78, 82
MspR9I CCNGG 3 cut(s) 9, 83, 486
Mva1269I GAATGC 1 cut(s) 396
MvaI CCWGG 1 cut(s) 486
MwoI GCNNNNNNNGC 1 cut(s) 338
NciI CCSGG 2 cut(s) 9, 83
NdeII GATC 3 cut(s) 141, 389, 490
NlaIII CATG 3 cut(s) 59, 341, 404
NlaIV GGNNCC 2 cut(s) 6, 432
NmeAIII GCCGAG 3 cut(s) 46, 120, 223
NmuCI GTSAC 1 cut(s) 307
OliI CACNNNNGTG 1 cut(s) 326
PaeR7I CTCGAG 1 cut(s) 32
PagI TCATGA 1 cut(s) 400
PciSI GCTCTTC 1 cut(s) 8
PctI GAATGC 1 cut(s) 396
PdmI GAANNNNTTC 1 cut(s) 289
PfeI GAWTC 1 cut(s) 457
PflMI CCANNNNNTGG 1 cut(s) 521
PkrI GCNGC 3 cut(s) 182, 185, 196
PleI GAGTC 4 cut(s) 40, 68, 104, 144
PpsI GAGTC 4 cut(s) 40, 68, 104, 144
Psp6I CCWGG 1 cut(s) 484
PspGI CCWGG 1 cut(s) 484
PspN4I GGNNCC 2 cut(s) 6, 432
PsuI RGATCY 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 326
SapI GCTCTTC 1 cut(s) 8
SatI GCNGC 3 cut(s) 181, 184, 195
Sau3AI GATC 3 cut(s) 141, 389, 490
SchI GAGTC 4 cut(s) 40, 68, 104, 145
ScrFI CCNGG 3 cut(s) 9, 83, 486
SduI GDGCHC 1 cut(s) 39
SetI ASST 9 cut(s) 30, 134, 368, 413, 469, 475, 481, 487, 499
SexAI ACCWGGT 1 cut(s) 484
Sfr274I CTCGAG 1 cut(s) 32
SlaI CTCGAG 1 cut(s) 32
SmiMI CAYNNNNRTG 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 3 cut(s) 228, 239, 263
SsiI CCGC 4 cut(s) 180, 183, 186, 194
SspI AATATT 1 cut(s) 350
SspMI CTAG 1 cut(s) 333
StyD4I CCNGG 3 cut(s) 7, 81, 484
TaiI ACGT 1 cut(s) 134
TaqI TCGA 3 cut(s) 33, 87, 134
TasI AATT 3 cut(s) 228, 239, 263
TauI GCSGC 3 cut(s) 183, 186, 197
TfiI GAWTC 1 cut(s) 457
TseFI GTSAC 1 cut(s) 307
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 2 cut(s) 389, 492
Van91I CCANNNNNTGG 1 cut(s) 521
XhoI CTCGAG 1 cut(s) 32
XmnI GAANNNNTTC 1 cut(s) 289
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.