Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007996

Physical Location & Seq

Genomic Coordinates Forward (+)

1547412 .. 1549860

Gene Structure 2449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGACTAAAACTCGTGGGACTGATATGACAAAGAAAAAGGGTAAACATGTTTCTGAAATGGATTTCAAGACTCATCAGCATACTGAATTTTTCGATAAGTTGATAGAGCTCACGCCTGCTAGATTCTACTTACCTGATGAGACAGAAAGGAAATGGTATCCAGGTCTTAGCAAGGCTCAAAAAGCTAGAGCCAAGAAAAAAACAAATGACAACCTAAAGAAGGCGAAGAGAGATAAGTTGGACCCAGAGAAGTCTGCTTTGACGACTCTCGATTTACTGAAGGAGAAGATAGAGAAGGAAAGATTGGCTTCACAGAAGCAGAAGCTTAAGAAGAAACACGCGGATTTACGGGAGCAGAAGCTAGAGCAGGAAAAATCAGGTACTGAGCTTCCTGATGATGACAGTAAGAAGGAAACAGATAACAACAGACTAAATGATGATGACAGTAAGGAGGAAACAGATAATAACAGACAAAAGGATGATCGATCTGTTACGTACGAAGAGCTAAGGGAACGCCTCCACCGCAAAATTGATGAGCTCAAAGGTGGTCGTGGAGGTTCAGATAGACCAAGAAGCAATGAAAGAAGGAAGAAGAATCTGCCAAATAAGAGAAAGAGGGATACAGTTTCTGAGGAGAAGACTGTGGAGGAGATTAAGTCAGCAGATAAAGGTAAGGGTAAGTTGGATGTGGAGGAGGCTGCTAAGGACCTTACATTTGGTTATGTCAAGATTGATGACGATGAAGAACACGGAAAAGAGAAAAAGAAACGAAGGCTTTCAAAGGCAAGAGAACTTGAAAGGGCTATGAAGTTAGAGGCTGCAAAGAAGGATCCAGAAAAAGGTGATGTAATTGCAAAGAAGCACTCATGGAAGGCAGCTACAAGCAGAGCAGCTGGTATCAAGGTTCATGATGACCCAAAGCTATTGAAGCAAAGCATCCACAAAGACAAAAAGAGGCAAGAGAAGAACGCAGAGAAGTGGAAAGAGAGAATTGAAGGGCAACAAAAGTTCAAGGTGGAGAAGCAGCAAAAGAGATCAGGGAATATTGCCGATAGGATTGAACAGAATAAGATGCGCAAAATCGCCAAGAGAGAGAAAAAGCTCCTGCGTCCTGGCTTTGAAGGCCGCAAAGAAGGGTTTATCAATGAAGGTGGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRP14 SURF6

Protein Analysis

386

Amino Acids

45.14

Weight (kDa)

9.77

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRP14	PF15459	25 - 83	1.9e-18	60S ribosome biogenesis protein Rrp14
SURF6	PF04935	191 - 360	1.8e-20	Surfeit locus protein 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05210 AT5G05210
fragaria_vesca	FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_4g05060 FvH4_4g05060
malus_domestica	MD13G1224300.v1.1 MD16G1229100.v1.1
prunus_persica	Prupe.1G051000_v2.0.a1
pyrus_communis	pycom13g19810
rosa_chinensis	RchiOBHm_Chr4g0395981
rosa_laevigata	RLG00000009583
rosa_multiflora	Rmu_sc0001103.1_g000003
rosa_roxburghii	Rroxscaffold_5G00340770
rosa_rugosa	Rorug03G0353000
rosa_samantha	Rh4AG064400 Rh4AG066200 Rh4BG063100 Rh4CG069500 Rh4DG059600
rosa_wichuraiana	Rw4G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1076
AccII	CGCG	1 cut(s)	341
AciI	CCGC	3 cut(s)	341, 523, 1126
AclWI	GGATC	2 cut(s)	824, 837
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	299
AfaI	GTAC	2 cut(s)	382, 497
AfiI	CCNNNNNNNGG	2 cut(s)	220, 839
AflII	CTTAAG	1 cut(s)	326
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	8 cut(s)	67, 780, 797, 928, 995, 1012, 1061, 1121
AjnI	CCWGG	2 cut(s)	160, 1111
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
Alw21I	GWGCWC	2 cut(s)	111, 540
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	2 cut(s)	824, 837
AlwNI	CAGNNNCTG	2 cut(s)	383, 629
AoxI	GGCC	1 cut(s)	1123
ApeKI	GCWGC	5 cut(s)	698, 818, 875, 890, 1024
ApoI	RAATTY	1 cut(s)	86
ArsI	GACNNNNNNTTYG	2 cut(s)	698, 730
Asp700I	GAANNNNTTC	1 cut(s)	775
AspLEI	GCGC	1 cut(s)	1077
AspS9I	GGNCC	2 cut(s)	241, 706
AsuHPI	GGTGA	1 cut(s)	854
AvaII	GGWCC	2 cut(s)	241, 706
BamHI	GGATCC	1 cut(s)	829
BanII	GRGCYC	2 cut(s)	111, 540
BauI	CACGAG	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	644
Bbv12I	GWGCWC	2 cut(s)	111, 540
BbvI	GCAGC	5 cut(s)	685, 805, 887, 902, 1036
BciT130I	CCWGG	2 cut(s)	162, 1113
BciVI	GTATCC	2 cut(s)	168, 613
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	4 cut(s)	120, 186, 362, 1159
BfrI	CTTAAG	1 cut(s)	326
BfuI	GTATCC	2 cut(s)	168, 613
BisI	GCNGC	6 cut(s)	699, 819, 876, 891, 1025, 1126
BlsI	GCNGC	6 cut(s)	700, 820, 877, 892, 1026, 1127
Bme1390I	CCNGG	2 cut(s)	162, 1113
Bme18I	GGWCC	2 cut(s)	241, 706
BmgT120I	GGNCC	2 cut(s)	241, 706
BmiI	GGNNCC	2 cut(s)	243, 831
BmrFI	CCNGG	2 cut(s)	162, 1113
BmsI	GCATC	2 cut(s)	945, 1062
BpiI	GAAGAC	1 cut(s)	644
Bpu10I	CCTNAGC	2 cut(s)	506, 702
Bsa29I	ATCGAT	1 cut(s)	484
BsaAI	YACGTR	1 cut(s)	495
BsaXI	ACNNNNNCTCC	2 cut(s)	641, 671
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 839
Bse3DI	GCAATG	1 cut(s)	583
BseBI	CCWGG	2 cut(s)	162, 1113
BseCI	ATCGAT	1 cut(s)	484
BseGI	GGATG	3 cut(s)	484, 691, 936
BseLI	CCNNNNNNNGG	2 cut(s)	220, 839
BseMI	GCAATG	1 cut(s)	583
BseMII	CTCAG	2 cut(s)	375, 621
BseRI	GAGGAG	3 cut(s)	647, 662, 707
BseXI	GCAGC	5 cut(s)	685, 805, 887, 902, 1036
Bsh1236I	CGCG	1 cut(s)	341
BshFI	GGCC	1 cut(s)	1125
BshVI	ATCGAT	1 cut(s)	484
BsiHKAI	GWGCWC	2 cut(s)	111, 540
BsiWI	CGTACG	1 cut(s)	495
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	2 cut(s)	220, 839
BsmAI	GTCTC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	1125
Bsp1286I	GDGCHC	2 cut(s)	111, 540
Bsp143I	GATC	4 cut(s)	481, 485, 829, 1034
BspACI	CCGC	3 cut(s)	341, 523, 1126
BspANI	GGCC	1 cut(s)	1125
BspCNI	CTCAG	2 cut(s)	376, 622
BspDI	ATCGAT	1 cut(s)	484
BspFNI	CGCG	1 cut(s)	341
BspHI	TCATGA	1 cut(s)	907
BspLI	GGNNCC	2 cut(s)	243, 831
BspPI	GGATC	2 cut(s)	824, 837
BspQI	GCTCTTC	1 cut(s)	495
BspTI	CTTAAG	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	583
BssMI	GATC	4 cut(s)	481, 485, 829, 1034
BssSI	CACGAG	1 cut(s)	12
Bst2BI	CACGAG	1 cut(s)	12
Bst2UI	CCWGG	2 cut(s)	162, 1113
Bst4CI	ACNGT	4 cut(s)	404, 446, 625, 643
Bst6I	CTCTTC	2 cut(s)	221, 495
BstAFI	CTTAAG	1 cut(s)	326
BstBAI	YACGTR	1 cut(s)	495
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	5 cut(s)	167, 384, 506, 630, 702
BstENI	CCTNNNNNAGG	1 cut(s)	218
BstF5I	GGATG	3 cut(s)	484, 691, 936
BstFNI	CGCG	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	1077
BstKTI	GATC	4 cut(s)	484, 488, 832, 1037
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	4 cut(s)	481, 485, 829, 1034
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 522, 928, 1122
BstNI	CCWGG	2 cut(s)	162, 1113
BstNSI	RCATGY	1 cut(s)	50
BstSCI	CCNGG	2 cut(s)	160, 1111
BstSNI	TACGTA	1 cut(s)	495
BstUI	CGCG	1 cut(s)	341
BstV1I	GCAGC	5 cut(s)	685, 805, 887, 902, 1036
BstV2I	GAAGAC	1 cut(s)	644
BstX2I	RGATCY	1 cut(s)	829
BstYI	RGATCY	1 cut(s)	829
Bsu15I	ATCGAT	1 cut(s)	484
BsuI	GTATCC	2 cut(s)	168, 613
BsuRI	GGCC	1 cut(s)	1125
BsuTUI	ATCGAT	1 cut(s)	484
BtsCI	GGATG	3 cut(s)	484, 691, 936
Cac8I	GCNNGC	1 cut(s)	117
CaiI	CAGNNNCTG	2 cut(s)	383, 629
CciI	TCATGA	1 cut(s)	907
CfoI	GCGC	1 cut(s)	1077
Cfr13I	GGNCC	2 cut(s)	241, 706
ClaI	ATCGAT	1 cut(s)	484
CseI	GACGC	1 cut(s)	1097
Csp6I	GTAC	2 cut(s)	381, 496
CspCI	CAANNNNNGTGG	1 cut(s)	1132
CviAII	CATG	3 cut(s)	47, 867, 908
CviQI	GTAC	2 cut(s)	381, 496
DdeI	CTNAG	5 cut(s)	167, 384, 506, 630, 702
DpnI	GATC	4 cut(s)	483, 487, 831, 1036
DpnII	GATC	4 cut(s)	481, 485, 829, 1034
Eam1104I	CTCTTC	2 cut(s)	221, 495
EarI	CTCTTC	2 cut(s)	221, 495
Ecl136II	GAGCTC	2 cut(s)	109, 538
Eco105I	TACGTA	1 cut(s)	495
Eco24I	GRGCYC	2 cut(s)	111, 540
Eco47I	GGWCC	2 cut(s)	241, 706
Eco53kI	GAGCTC	2 cut(s)	109, 538
Eco57I	CTGAAG	1 cut(s)	299
EcoICRI	GAGCTC	2 cut(s)	109, 538
EcoNI	CCTNNNNNAGG	1 cut(s)	218
EcoO109I	RGGNCCY	1 cut(s)	706
EcoRII	CCWGG	2 cut(s)	160, 1111
EcoT38I	GRGCYC	2 cut(s)	111, 540
FaeI	CATG	3 cut(s)	50, 870, 911
FaiI	YATR	7 cut(s)	26, 48, 81, 723, 806, 868, 909
FalI	AAGNNNNNCTT	2 cut(s)	292, 324
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	3 cut(s)	46, 866, 907
Fnu4HI	GCNGC	6 cut(s)	699, 819, 876, 891, 1025, 1126
FokI	GGATG	3 cut(s)	491, 698, 923
FriOI	GRGCYC	2 cut(s)	111, 540
Fsp4HI	GCNGC	6 cut(s)	699, 819, 876, 891, 1025, 1126
FspBI	CTAG	4 cut(s)	120, 186, 362, 1159
FspI	TGCGCA	1 cut(s)	1076
GlaI	GCGC	1 cut(s)	1076
GluI	GCNGC	6 cut(s)	699, 819, 876, 891, 1025, 1126
HaeIII	GGCC	1 cut(s)	1125
HgaI	GACGC	1 cut(s)	1097
HhaI	GCGC	1 cut(s)	1077
Hin1II	CATG	3 cut(s)	50, 870, 911
Hin6I	GCGC	1 cut(s)	1075
HinP1I	GCGC	1 cut(s)	1075
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	4 cut(s)	70, 123, 265, 595
HphI	GGTGA	1 cut(s)	854
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	3 cut(s)	55, 562, 631
Hpy188III	TCNNGA	6 cut(s)	67, 269, 392, 727, 833, 908
Hpy8I	GTNNAC	1 cut(s)	44
HpyCH4III	ACNGT	4 cut(s)	404, 446, 625, 643
HpyCH4IV	ACGT	1 cut(s)	494
HpyCH4V	TGCA	2 cut(s)	821, 854
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 522, 928, 1122
HpyF3I	CTNAG	5 cut(s)	167, 384, 506, 630, 702
HpySE526I	ACGT	1 cut(s)	494
Hsp92II	CATG	3 cut(s)	50, 870, 911
HspAI	GCGC	1 cut(s)	1075
Kzo9I	GATC	4 cut(s)	481, 485, 829, 1034
LguI	GCTCTTC	1 cut(s)	495
LmnI	GCTCC	2 cut(s)	352, 1107
Lsp1109I	GCAGC	5 cut(s)	685, 805, 887, 902, 1036
LweI	GCATC	2 cut(s)	945, 1062
MaeI	CTAG	4 cut(s)	120, 186, 362, 1159
MaeII	ACGT	1 cut(s)	494
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	4 cut(s)	483, 487, 831, 1036
MboI	GATC	4 cut(s)	481, 485, 829, 1034
MboII	GAAGA	9 cut(s)	238, 298, 343, 512, 601, 604, 649, 755, 976
MflI	RGATCY	1 cut(s)	829
MhlI	GDGCHC	2 cut(s)	111, 540
MluCI	AATT	4 cut(s)	86, 528, 849, 990
MlyI	GAGTC	2 cut(s)	64, 259
MmeI	TCCRAC	2 cut(s)	219, 663
MroXI	GAANNNNTTC	1 cut(s)	775
MseI	TTAA	2 cut(s)	327, 654
MspA1I	CMGCKG	1 cut(s)	893
MspCI	CTTAAG	1 cut(s)	326
MspR9I	CCNGG	2 cut(s)	162, 1113
MvaI	CCWGG	2 cut(s)	162, 1113
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	4 cut(s)	182, 522, 928, 1122
NdeII	GATC	4 cut(s)	481, 485, 829, 1034
NlaIII	CATG	3 cut(s)	50, 870, 911
NlaIV	GGNNCC	2 cut(s)	243, 831
NsbI	TGCGCA	1 cut(s)	1076
NspI	RCATGY	1 cut(s)	50
PagI	TCATGA	1 cut(s)	907
PciI	ACATGT	1 cut(s)	46
PciSI	GCTCTTC	1 cut(s)	495
PdmI	GAANNNNTTC	1 cut(s)	775
PfeI	GAWTC	2 cut(s)	123, 595
Pfl23II	CGTACG	1 cut(s)	495
PkrI	GCNGC	6 cut(s)	700, 820, 877, 892, 1026, 1127
PleI	GAGTC	2 cut(s)	64, 259
PpsI	GAGTC	2 cut(s)	64, 259
Ppu21I	YACGTR	1 cut(s)	495
PpuMI	RGGWCCY	1 cut(s)	706
PscI	ACATGT	1 cut(s)	46
Psp124BI	GAGCTC	2 cut(s)	111, 540
Psp5II	RGGWCCY	1 cut(s)	706
Psp6I	CCWGG	2 cut(s)	160, 1111
PspGI	CCWGG	2 cut(s)	160, 1111
PspLI	CGTACG	1 cut(s)	495
PspN4I	GGNNCC	2 cut(s)	243, 831
PspPI	GGNCC	2 cut(s)	241, 706
PspPPI	RGGWCCY	1 cut(s)	706
PstNI	CAGNNNCTG	2 cut(s)	383, 629
PsuI	RGATCY	1 cut(s)	829
PvuII	CAGCTG	1 cut(s)	893
RsaI	GTAC	2 cut(s)	382, 497
RsaNI	GTAC	2 cut(s)	381, 496
SacI	GAGCTC	2 cut(s)	111, 540
SapI	GCTCTTC	1 cut(s)	495
SaqAI	TTAA	2 cut(s)	327, 654
SatI	GCNGC	6 cut(s)	699, 819, 876, 891, 1025, 1126
Sau3AI	GATC	4 cut(s)	481, 485, 829, 1034
Sau96I	GGNCC	2 cut(s)	241, 706
SchI	GAGTC	2 cut(s)	64, 259
ScrFI	CCNGG	2 cut(s)	162, 1113
SduI	GDGCHC	2 cut(s)	111, 540
SfaNI	GCATC	2 cut(s)	945, 1062
SinI	GGWCC	2 cut(s)	241, 706
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SnaBI	TACGTA	1 cut(s)	495
Sse9I	AATT	4 cut(s)	86, 528, 849, 990
SsiI	CCGC	3 cut(s)	341, 523, 1126
SspI	AATATT	1 cut(s)	1045
SspMI	CTAG	4 cut(s)	120, 186, 362, 1159
SstI	GAGCTC	2 cut(s)	111, 540
StyD4I	CCNGG	2 cut(s)	160, 1111
TaaI	ACNGT	4 cut(s)	404, 446, 625, 643
TaiI	ACGT	1 cut(s)	497
TaqI	TCGA	3 cut(s)	93, 270, 484
TasI	AATT	4 cut(s)	86, 528, 849, 990
TauI	GCSGC	1 cut(s)	1128
TfiI	GAWTC	2 cut(s)	123, 595
Tru1I	TTAA	2 cut(s)	327, 654
Tru9I	TTAA	2 cut(s)	327, 654
TseI	GCWGC	5 cut(s)	698, 818, 875, 890, 1024
TspDTI	ATGAA	5 cut(s)	594, 756, 821, 896, 1161
TspGWI	ACGGA	1 cut(s)	765
Vha464I	CTTAAG	1 cut(s)	326
VpaK11BI	GGWCC	2 cut(s)	241, 706
XagI	CCTNNNNNAGG	1 cut(s)	218
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	775
XspI	CTAG	4 cut(s)	120, 186, 362, 1159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.