Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007996

Physical Location & Seq

Genomic Coordinates Reverse (-)

15733389 .. 15734375

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g19810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTTAGTTGAGCTCATCCCTGCTAGGTTCTATCTACCCGTTGACAATGATGATAAGCCGTGGTTTCAAGGTCTTAGCAAGACTGCAAAAGCTTCAGCAAAGAAGGAATCAAAGGAAAACATTAAGAAAGCTCGAAGAGAACGGTTGGATCCAGAGAAGTCTTCTAAGACAACCCTTGATTTGCTAAAGCAAAGTTTGGAAAAGAAGTCAAACGATGAGAGTGATAGTGACGAAATAGAGATCAAGCCTGTGGTGCCTGGCCTGGAAGATGATGAATGTTCAGTGGAAGATGACGAACGTTCAGTGACATATGAAGAACTCCAGCAACGGCTTCGTTGTAAACTTGATGAGTTTCGGGCTGGTCGGCATTGTGAAGGTTCAGAGAGAGCAAGGAAGAGGATTGAGCGAAAGGAAAGATATGAGAAGAAAGGAACTGACCAGAAGAAACGGAAGAGAGAAGCCTTATCTGATGGTAAGAAATCTACTAGTGATGATTCAGCGGCTAAAGTGGAGAAAGATGTTGCAGAGGCTGCAAAGGAGCTGACATTCGGTTATGTCAAACTTGGGGATGAAGATGAGCTTGGTAAGACAAATAAGAAGAAAAAATTGTCAAAGTTGCAGGAGCTTGAGAGGGCAAAACAGTTGCAAGAAGCCAAGAAAGATCCAGAAAAAGGTGAGATAATCTCGCAGAAGCATTCTTGGAAAGCAGCAACAAGTAGAGCTGCTGGGATCAAGGTTCACGATGATCCAAAGTTGTTGAAACAAAGCATTCAGAAGGAGAAGAAGCGGCATGAGAAGAATGCCGAGAAATGGAAGGGAAGGGTTGAAACCACAGAGAAGATGAAAGCAGATAAACAGAAGAAGAGATCAGATAACATATCACAGAAGAAGCAAGAGAAGATAAACCGGAAAATAGCAAAAAGAGAGAAAAAGCTCATGCGGCCAGGGTTTGAAGGTCGCAAGGAAGGTTTTATCACCGAAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRP14 SURF6

Protein Analysis

329

Amino Acids

37.95

Weight (kDa)

9.53

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRP14	PF15459	2 - 52	7.3e-18	60S ribosome biogenesis protein Rrp14
SURF6	PF04935	128 - 304	9.7e-24	Surfeit locus protein 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05210 AT5G05210
fragaria_vesca	FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_4g05060 FvH4_4g05060
malus_domestica	MD13G1224300.v1.1 MD16G1229100.v1.1
prunus_persica	Prupe.1G051000_v2.0.a1
pyrus_communis	pycom13g19810
rosa_chinensis	RchiOBHm_Chr4g0395981
rosa_laevigata	RLG00000009583
rosa_multiflora	Rmu_sc0001103.1_g000003
rosa_roxburghii	Rroxscaffold_5G00340770
rosa_rugosa	Rorug03G0353000
rosa_samantha	Rh4AG064400 Rh4AG066200 Rh4BG063100 Rh4CG069500 Rh4DG059600
rosa_wichuraiana	Rw4G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	253
AciI	CCGC	3 cut(s)	500, 787, 940
AclI	AACGTT	1 cut(s)	298
AclWI	GGATC	5 cut(s)	143, 156, 656, 737, 740
AcoI	YGGCCR	1 cut(s)	941
AcuI	CTGAAG	1 cut(s)	78
AfiI	CCNNNNNNNGG	2 cut(s)	671, 810
AgsI	TTSAA	4 cut(s)	68, 760, 827, 953
AhlI	ACTAGT	1 cut(s)	485
AjnI	CCWGG	3 cut(s)	256, 261, 943
AjuI	GAANNNNNNNTTGG	2 cut(s)	564, 596
AluBI	AGCT	8 cut(s)	13, 92, 131, 541, 580, 625, 722, 934
AluI	AGCT	8 cut(s)	13, 92, 131, 541, 580, 625, 722, 934
Alw21I	GWGCWC	1 cut(s)	15
AlwI	GGATC	5 cut(s)	143, 156, 656, 737, 740
AlwNI	CAGNNNCTG	1 cut(s)	530
AoxI	GGCC	2 cut(s)	259, 941
ApeKI	GCWGC	3 cut(s)	530, 707, 722
AsuHPI	GGTGA	2 cut(s)	686, 967
BamHI	GGATCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	3 cut(s)	517, 709, 719
BccI	CCATC	1 cut(s)	464
BceAI	ACGGC	2 cut(s)	43, 344
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciT130I	CCWGG	3 cut(s)	258, 263, 945
BcuI	ACTAGT	1 cut(s)	485
BfaI	CTAG	2 cut(s)	24, 486
BisI	GCNGC	6 cut(s)	501, 531, 708, 723, 788, 941
BlsI	GCNGC	6 cut(s)	502, 532, 709, 724, 789, 942
Bme1390I	CCNGG	3 cut(s)	258, 263, 945
BmiI	GGNNCC	2 cut(s)	150, 255
BmrFI	CCNGG	3 cut(s)	258, 263, 945
BpiI	GAAGAC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	668, 700
BpmI	CTGGAG	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	647
BsaJI	CCNNGG	2 cut(s)	59, 944
BsaWI	WCCGGW	1 cut(s)	906
Bsc4I	CCNNNNNNNGG	2 cut(s)	671, 810
BseBI	CCWGG	3 cut(s)	258, 263, 945
BseDI	CCNNGG	2 cut(s)	59, 944
BseGI	GGATG	2 cut(s)	15, 574
BseLI	CCNNNNNNNGG	2 cut(s)	671, 810
BseXI	GCAGC	3 cut(s)	517, 709, 719
BseYI	CCCAGC	1 cut(s)	725
BshFI	GGCC	2 cut(s)	261, 943
BshNI	GGYRCC	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	907
BslI	CCNNNNNNNGG	2 cut(s)	671, 810
BsmI	GAATGC	3 cut(s)	694, 768, 805
BsnI	GGCC	2 cut(s)	261, 943
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	6 cut(s)	148, 240, 661, 729, 745, 866
BspACI	CCGC	3 cut(s)	500, 787, 940
BspANI	GGCC	2 cut(s)	261, 943
BspLI	GGNNCC	2 cut(s)	150, 255
BspPI	GGATC	5 cut(s)	143, 156, 656, 737, 740
BspT107I	GGYRCC	1 cut(s)	253
BssECI	CCNNGG	2 cut(s)	59, 944
BssMI	GATC	6 cut(s)	148, 240, 661, 729, 745, 866
Bst2UI	CCWGG	3 cut(s)	258, 263, 945
Bst4CI	ACNGT	2 cut(s)	144, 642
Bst6I	CTCTTC	4 cut(s)	130, 389, 446, 857
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstDEI	CTNAG	2 cut(s)	74, 165
BstDSI	CCRYGG	1 cut(s)	59
BstF5I	GGATG	2 cut(s)	15, 574
BstKTI	GATC	6 cut(s)	151, 243, 664, 732, 748, 869
BstMBI	GATC	6 cut(s)	148, 240, 661, 729, 745, 866
BstMWI	GCNNNNNNNGC	3 cut(s)	253, 530, 940
BstNI	CCWGG	3 cut(s)	258, 263, 945
BstSCI	CCNGG	3 cut(s)	256, 261, 943
BstV1I	GCAGC	3 cut(s)	517, 709, 719
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	2 cut(s)	148, 661
BstYI	RGATCY	2 cut(s)	148, 661
BsuRI	GGCC	2 cut(s)	261, 943
BtgI	CCRYGG	1 cut(s)	59
BtsCI	GGATG	2 cut(s)	15, 574
BtsIMutI	CAGTG	2 cut(s)	288, 309
CaiI	CAGNNNCTG	1 cut(s)	530
CviAII	CATG	2 cut(s)	791, 937
DdeI	CTNAG	2 cut(s)	74, 165
DpnI	GATC	6 cut(s)	150, 242, 663, 731, 747, 868
DpnII	GATC	6 cut(s)	148, 240, 661, 729, 745, 866
EaeI	YGGCCR	1 cut(s)	941
Eam1104I	CTCTTC	4 cut(s)	130, 389, 446, 857
EarI	CTCTTC	4 cut(s)	130, 389, 446, 857
Ecl136II	GAGCTC	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	13
EcoRII	CCWGG	3 cut(s)	256, 261, 943
EcoT38I	GRGCYC	1 cut(s)	15
FaeI	CATG	2 cut(s)	794, 940
FaiI	YATR	7 cut(s)	310, 312, 420, 555, 792, 878, 938
FalI	AAGNNNNNCTT	2 cut(s)	564, 596
FatI	CATG	2 cut(s)	790, 936
FauNDI	CATATG	1 cut(s)	310
Fnu4HI	GCNGC	6 cut(s)	501, 531, 708, 723, 788, 941
FokI	GGATG	2 cut(s)	2, 581
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	6 cut(s)	501, 531, 708, 723, 788, 941
FspBI	CTAG	2 cut(s)	24, 486
GluI	GCNGC	6 cut(s)	501, 531, 708, 723, 788, 941
GsaI	CCCAGC	1 cut(s)	729
GsuI	CTGGAG	1 cut(s)	305
HaeIII	GGCC	2 cut(s)	261, 943
HapII	CCGG	1 cut(s)	907
Hin1II	CATG	2 cut(s)	794, 940
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	2 cut(s)	107, 494
HpaII	CCGG	1 cut(s)	907
HphI	GGTGA	2 cut(s)	686, 967
Hpy166II	GTNNAC	3 cut(s)	43, 341, 739
Hpy188I	TCNGA	4 cut(s)	382, 469, 774, 871
Hpy188III	TCNNGA	3 cut(s)	152, 665, 740
Hpy8I	GTNNAC	3 cut(s)	43, 341, 739
HpyAV	CCTTC	8 cut(s)	97, 368, 769, 808, 813, 947, 959, 974
HpyCH4III	ACNGT	2 cut(s)	144, 642
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	5 cut(s)	86, 524, 533, 619, 646
HpyF10VI	GCNNNNNNNGC	3 cut(s)	253, 530, 940
HpyF3I	CTNAG	2 cut(s)	74, 165
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	2 cut(s)	794, 940
Kzo9I	GATC	6 cut(s)	148, 240, 661, 729, 745, 866
LmnI	GCTCC	2 cut(s)	538, 622
Lsp1109I	GCAGC	3 cut(s)	517, 709, 719
MaeI	CTAG	2 cut(s)	24, 486
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	2 cut(s)	227, 304
MalI	GATC	6 cut(s)	150, 242, 663, 731, 747, 868
MboI	GATC	6 cut(s)	148, 240, 661, 729, 745, 866
MflI	RGATCY	2 cut(s)	148, 661
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	1 cut(s)	605
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	3 cut(s)	390, 520, 624
MseI	TTAA	2 cut(s)	123, 985
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	1 cut(s)	907
MspR9I	CCNGG	3 cut(s)	258, 263, 945
Mva1269I	GAATGC	3 cut(s)	694, 768, 805
MvaI	CCWGG	3 cut(s)	258, 263, 945
MwoI	GCNNNNNNNGC	3 cut(s)	253, 530, 940
NdeI	CATATG	1 cut(s)	310
NdeII	GATC	6 cut(s)	148, 240, 661, 729, 745, 866
NlaIII	CATG	2 cut(s)	794, 940
NlaIV	GGNNCC	2 cut(s)	150, 255
NmeAIII	GCCGAG	1 cut(s)	829
NmuCI	GTSAC	2 cut(s)	227, 304
PctI	GAATGC	3 cut(s)	694, 768, 805
PfeI	GAWTC	2 cut(s)	107, 494
PkrI	GCNGC	6 cut(s)	502, 532, 709, 724, 789, 942
Psp124BI	GAGCTC	1 cut(s)	15
Psp1406I	AACGTT	1 cut(s)	298
Psp6I	CCWGG	3 cut(s)	256, 261, 943
PspFI	CCCAGC	1 cut(s)	725
PspGI	CCWGG	3 cut(s)	256, 261, 943
PspN4I	GGNNCC	2 cut(s)	150, 255
PstNI	CAGNNNCTG	1 cut(s)	530
PsuI	RGATCY	2 cut(s)	148, 661
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	123, 985
SatI	GCNGC	6 cut(s)	501, 531, 708, 723, 788, 941
Sau3AI	GATC	6 cut(s)	148, 240, 661, 729, 745, 866
ScrFI	CCNGG	3 cut(s)	258, 263, 945
SduI	GDGCHC	1 cut(s)	15
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
SpeI	ACTAGT	1 cut(s)	485
Sse9I	AATT	1 cut(s)	605
SsiI	CCGC	3 cut(s)	500, 787, 940
SspMI	CTAG	2 cut(s)	24, 486
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	3 cut(s)	256, 261, 943
TaaI	ACNGT	2 cut(s)	144, 642
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	133
TasI	AATT	1 cut(s)	605
TauI	GCSGC	3 cut(s)	503, 790, 943
TfiI	GAWTC	2 cut(s)	107, 494
Tru1I	TTAA	2 cut(s)	123, 985
Tru9I	TTAA	2 cut(s)	123, 985
TscAI	CASTG	2 cut(s)	288, 309
TseFI	GTSAC	2 cut(s)	227, 304
TseI	GCWGC	3 cut(s)	530, 707, 722
Tsp45I	GTSAC	2 cut(s)	227, 304
TspDTI	ATGAA	4 cut(s)	288, 327, 585, 857
TspGWI	ACGGA	1 cut(s)	463
TspRI	CASTG	2 cut(s)	288, 309
XspI	CTAG	2 cut(s)	24, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.