Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007996

Physical Location & Seq

Genomic Coordinates Forward (+)

54927886 .. 54930020

Gene Structure 2135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009583

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGCAGGGCTGGATGCGAGATCAGGCCCAATACATCACTGCCTCAGACCTGACATTTTGCCCCTTTTCCGTACTTCTTCCCTCTTCCGCTTTAGGGTTTCGTCACAACCGTCCCCTCCCATTCAATCACGCTCTGCTTCTCGTCGGTTCTTCTTCTCGGCTTCATCTTGCTCAAATGGGGAAAAAGATGAAGAATAAAACGGACGGAGAGACGATTGATTCTAATCCGATTATTGATTTGAAGTCTATTATCCATCAGCATTCCCAGTTCATGGACAAGCTAGTGGAGCTCATCCCGGCTAGGTTCTATTTACCCAATGACGACGACGAGAAGCCATGGTTTCAAGGCCTCAGCAACCCTGCAAAAGCTTCAGCTAAGAAGGAAACGAAGAAAAACATCAAGAAAGCTCGCAGAGATCGATTGGATCCAGAGAAGACTTCTACAACAACCCTTGATTTGCTAAAGCAAAGTTTGGAAAAGGAGAAGTCAAACGAGGATGAGAGTGATAGTGGTGAAATGGAGACTAAACCTGTGGTGCCTGGGTTGGAAGGTGACGACAGGTCAGTGACATATGAAGAACTCCAGCAACGGCTTCGTCGTAAAATTGAACAGTTTCAGTCTGGTCGCAATTGTGGAGTTTCAGAGAGAGCAAGGAAGAGGAGTGAAAGGAAGGAGAGATATGAGAAAGGAGCTGATGACAGGAAACGGAAGAGAGAAACTGCATCTGATGAAAAGAAACCTACTAGTAGTGATTCGGTGGACAAGAAAGTTGAAGAAGACGTTGCAGAGGCTTCTAAAGGGCTCACATTCAGTCGTGTCAAACTTGGGGGTGATGATGAGGTTGGAAAGAAGAAGAGAAGACTGTCAAAGGCGAAGGAGCTTGAGAGGGCCAAACAGTTGGAAGAAGTGAAGAAAGATCCAGAGAAAGGTAAGTCTCTCTTGTGGAAAACAGCAACCAGTAGAGCTGCTGGGGTGAAGGTTCATGATGATCCAAAGTTGCTGAAACAAAGCATAAAAAAGGAGAACAAGAAGCATCAGAAGAATGCTGAGAAATGGAAGGAAAGGGTTGAAACCACACACAAGTTGAAAGCAGACAAACAGAAGAAGAGATCTGATAATATTTCAGCAAAACTTGATGAGAAGAAAAAGCGCAAAATCGCAAAGAGAGAGAAGAAACTCATGCGGCCAGGATTTGAAGGTCGTAAAGAAGGTTATGTCAATGAAGGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRP14 SURF6

Protein Analysis

411

Amino Acids

47.03

Weight (kDa)

9.76

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRP14	PF15459	84 - 144	1.7e-20	60S ribosome biogenesis protein Rrp14
SURF6	PF04935	215 - 385	1.7e-19	Surfeit locus protein 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05210 AT5G05210
fragaria_vesca	FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_4g05060 FvH4_4g05060
malus_domestica	MD13G1224300.v1.1 MD16G1229100.v1.1
prunus_persica	Prupe.1G051000_v2.0.a1
pyrus_communis	pycom13g19810
rosa_chinensis	RchiOBHm_Chr4g0395981
rosa_laevigata	RLG00000009583
rosa_multiflora	Rmu_sc0001103.1_g000003
rosa_roxburghii	Rroxscaffold_5G00340770
rosa_rugosa	Rorug03G0353000
rosa_samantha	Rh4AG064400 Rh4AG066200 Rh4BG063100 Rh4CG069500 Rh4DG059600
rosa_wichuraiana	Rw4G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	535
AccB7I	CCANNNNNTGG	1 cut(s)	271
AciI	CCGC	2 cut(s)	87, 1183
AclWI	GGATC	4 cut(s)	419, 432, 911, 983
AcoI	YGGCCR	1 cut(s)	1184
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	1 cut(s)	72
AfiI	CCNNNNNNNGG	3 cut(s)	93, 271, 926
AgsI	TTSAA	8 cut(s)	124, 241, 344, 608, 773, 1070, 1087, 1196
AhdI	GACNNNNNGTC	1 cut(s)	559
AhlI	ACTAGT	1 cut(s)	743
AjnI	CCWGG	2 cut(s)	538, 1186
AluBI	AGCT	8 cut(s)	280, 289, 368, 374, 407, 692, 880, 965
AluI	AGCT	8 cut(s)	280, 289, 368, 374, 407, 692, 880, 965
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	3 cut(s)	203, 515, 939
AlwI	GGATC	4 cut(s)	419, 432, 911, 983
AoxI	GGCC	4 cut(s)	24, 346, 888, 1184
ApeKI	GCWGC	1 cut(s)	965
Asp700I	GAANNNNTTC	1 cut(s)	612
AspLEI	GCGC	1 cut(s)	1152
AspS9I	GGNCC	2 cut(s)	25, 888
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	4 cut(s)	524, 563, 842, 985
BamHI	GGATCC	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	535
BanII	GRGCYC	2 cut(s)	291, 804
BbsI	GAAGAC	3 cut(s)	440, 783, 865
Bbv12I	GWGCWC	1 cut(s)	291
BbvCI	CCTCAGC	1 cut(s)	350
BbvI	GCAGC	1 cut(s)	952
BccI	CCATC	1 cut(s)	261
BceAI	ACGGC	1 cut(s)	605
BcgI	CGANNNNNNTGC	2 cut(s)	575, 609
BciT130I	CCWGG	2 cut(s)	540, 1188
BcnI	CCSGG	1 cut(s)	296
BcoDI	GTCTC	3 cut(s)	203, 515, 939
BcuI	ACTAGT	1 cut(s)	743
BfaI	CTAG	3 cut(s)	281, 300, 744
BglII	AGATCT	1 cut(s)	1109
BisI	GCNGC	2 cut(s)	966, 1184
BlsI	GCNGC	2 cut(s)	967, 1185
Bme1390I	CCNGG	3 cut(s)	296, 540, 1188
BmeRI	GACNNNNNGTC	1 cut(s)	559
BmgT120I	GGNCC	2 cut(s)	25, 888
BmiI	GGNNCC	2 cut(s)	426, 537
BmrFI	CCNGG	3 cut(s)	296, 540, 1188
BmrI	ACTGGG	1 cut(s)	259
BmsI	GCATC	3 cut(s)	3, 731, 1042
BmuI	ACTGGG	1 cut(s)	259
BpiI	GAAGAC	3 cut(s)	440, 783, 865
BpmI	CTGGAG	1 cut(s)	566
Bpu10I	CCTNAGC	1 cut(s)	350
BpuEI	CTTGAG	1 cut(s)	902
BpuMI	CCSGG	1 cut(s)	296
Bsa29I	ATCGAT	1 cut(s)	418
BsaBI	GATNNNNATC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	335, 539
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 271, 926
Bse1I	ACTGG	2 cut(s)	265, 957
Bse8I	GATNNNNATC	1 cut(s)	222
BseBI	CCWGG	2 cut(s)	540, 1188
BseCI	ATCGAT	1 cut(s)	418
BseDI	CCNNGG	2 cut(s)	335, 539
BseGI	GGATG	3 cut(s)	18, 291, 502
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	3 cut(s)	93, 271, 926
BseMII	CTCAG	3 cut(s)	57, 364, 1038
BseNI	ACTGG	2 cut(s)	265, 957
BseRI	GAGGAG	1 cut(s)	673
BseXI	GCAGC	1 cut(s)	952
BseYI	CCCAGC	1 cut(s)	968
BshFI	GGCC	4 cut(s)	26, 348, 890, 1186
BshNI	GGYRCC	1 cut(s)	535
BshVI	ATCGAT	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	296
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	3 cut(s)	93, 271, 926
BsmAI	GTCTC	3 cut(s)	203, 515, 939
BsmBI	CGTCTC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	96
BsmI	GAATGC	2 cut(s)	259, 1048
BsnI	GGCC	4 cut(s)	26, 348, 890, 1186
Bsp1286I	GDGCHC	2 cut(s)	291, 804
Bsp143I	GATC	6 cut(s)	19, 415, 424, 916, 988, 1109
Bsp19I	CCATGG	1 cut(s)	335
BspACI	CCGC	2 cut(s)	87, 1183
BspANI	GGCC	4 cut(s)	26, 348, 890, 1186
BspCNI	CTCAG	3 cut(s)	56, 363, 1039
BspDI	ATCGAT	1 cut(s)	418
BspHI	TCATGA	1 cut(s)	982
BspLI	GGNNCC	2 cut(s)	426, 537
BspPI	GGATC	4 cut(s)	419, 432, 911, 983
BspT107I	GGYRCC	1 cut(s)	535
BsrI	ACTGG	2 cut(s)	265, 957
BssECI	CCNNGG	2 cut(s)	335, 539
BssMI	GATC	6 cut(s)	19, 415, 424, 916, 988, 1109
BssT1I	CCWWGG	1 cut(s)	335
Bst2UI	CCWGG	2 cut(s)	540, 1188
Bst4CI	ACNGT	4 cut(s)	110, 612, 864, 897
Bst6I	CTCTTC	5 cut(s)	88, 650, 704, 848, 1100
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	4 cut(s)	43, 350, 375, 1047
BstDSI	CCRYGG	1 cut(s)	335
BstF5I	GGATG	3 cut(s)	18, 291, 502
BstHHI	GCGC	1 cut(s)	1152
BstKTI	GATC	6 cut(s)	22, 418, 427, 919, 991, 1112
BstMAI	GTCTC	3 cut(s)	203, 515, 939
BstMBI	GATC	6 cut(s)	19, 415, 424, 916, 988, 1109
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstNI	CCWGG	2 cut(s)	540, 1188
BstSCI	CCNGG	3 cut(s)	294, 538, 1186
BstV1I	GCAGC	1 cut(s)	952
BstV2I	GAAGAC	3 cut(s)	440, 783, 865
BstX2I	RGATCY	3 cut(s)	424, 916, 1109
BstXI	CCANNNNNNTGG	1 cut(s)	898
BstYI	RGATCY	3 cut(s)	424, 916, 1109
Bsu15I	ATCGAT	1 cut(s)	418
BsuRI	GGCC	4 cut(s)	26, 348, 890, 1186
BsuTUI	ATCGAT	1 cut(s)	418
BtgI	CCRYGG	1 cut(s)	335
BtsCI	GGATG	3 cut(s)	18, 291, 502
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	2 cut(s)	36, 570
Cac8I	GCNNGC	1 cut(s)	409
CciI	TCATGA	1 cut(s)	982
CfoI	GCGC	1 cut(s)	1152
Cfr13I	GGNCC	2 cut(s)	25, 888
ClaI	ATCGAT	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	71
CviAII	CATG	4 cut(s)	271, 336, 983, 1180
CviQI	GTAC	1 cut(s)	71
DdeI	CTNAG	4 cut(s)	43, 350, 375, 1047
DpnI	GATC	6 cut(s)	21, 417, 426, 918, 990, 1111
DpnII	GATC	6 cut(s)	19, 415, 424, 916, 988, 1109
DriI	GACNNNNNGTC	1 cut(s)	559
EaeI	YGGCCR	1 cut(s)	1184
Eam1104I	CTCTTC	5 cut(s)	88, 650, 704, 848, 1100
Eam1105I	GACNNNNNGTC	1 cut(s)	559
EarI	CTCTTC	5 cut(s)	88, 650, 704, 848, 1100
Ecl136II	GAGCTC	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	335
Eco147I	AGGCCT	1 cut(s)	348
Eco24I	GRGCYC	2 cut(s)	291, 804
Eco53kI	GAGCTC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	354
EcoICRI	GAGCTC	1 cut(s)	289
EcoRII	CCWGG	2 cut(s)	538, 1186
EcoT14I	CCWWGG	1 cut(s)	335
EcoT38I	GRGCYC	2 cut(s)	291, 804
ErhI	CCWWGG	1 cut(s)	335
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	4 cut(s)	274, 339, 986, 1183
FalI	AAGNNNNNCTT	2 cut(s)	923, 955
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	4 cut(s)	270, 335, 982, 1179
FauNDI	CATATG	1 cut(s)	571
Fnu4HI	GCNGC	2 cut(s)	966, 1184
FokI	GGATG	3 cut(s)	25, 278, 509
FriOI	GRGCYC	2 cut(s)	291, 804
Fsp4HI	GCNGC	2 cut(s)	966, 1184
FspBI	CTAG	3 cut(s)	281, 300, 744
GlaI	GCGC	1 cut(s)	1151
GluI	GCNGC	2 cut(s)	966, 1184
GsaI	CCCAGC	1 cut(s)	972
GsuI	CTGGAG	1 cut(s)	566
HaeIII	GGCC	4 cut(s)	26, 348, 890, 1186
HapII	CCGG	1 cut(s)	296
HhaI	GCGC	1 cut(s)	1152
Hin1II	CATG	4 cut(s)	274, 339, 986, 1183
Hin6I	GCGC	1 cut(s)	1150
HinP1I	GCGC	1 cut(s)	1150
HindIII	AAGCTT	1 cut(s)	366
HinfI	GANTC	2 cut(s)	218, 752
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	4 cut(s)	524, 563, 842, 985
Hpy166II	GTNNAC	1 cut(s)	760
Hpy188I	TCNGA	6 cut(s)	46, 228, 643, 727, 1038, 1114
Hpy188III	TCNNGA	4 cut(s)	400, 428, 920, 983
Hpy8I	GTNNAC	1 cut(s)	760
Hpy99I	CGWCG	4 cut(s)	146, 326, 329, 600
HpyAV	CCTTC	9 cut(s)	373, 542, 664, 868, 970, 1051, 1190, 1202, 1217
HpyCH4III	ACNGT	4 cut(s)	110, 612, 864, 897
HpyCH4IV	ACGT	1 cut(s)	780
HpyCH4V	TGCA	5 cut(s)	4, 362, 722, 785, 1229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpyF3I	CTNAG	4 cut(s)	43, 350, 375, 1047
HpySE526I	ACGT	1 cut(s)	780
Hsp92II	CATG	4 cut(s)	274, 339, 986, 1183
HspAI	GCGC	1 cut(s)	1150
Kzo9I	GATC	6 cut(s)	19, 415, 424, 916, 988, 1109
LmnI	GCTCC	3 cut(s)	286, 689, 877
Lsp1109I	GCAGC	1 cut(s)	952
LweI	GCATC	3 cut(s)	3, 731, 1042
MaeI	CTAG	3 cut(s)	281, 300, 744
MaeII	ACGT	1 cut(s)	780
MaeIII	GTNAC	3 cut(s)	101, 551, 565
MalI	GATC	6 cut(s)	21, 417, 426, 918, 990, 1111
MboI	GATC	6 cut(s)	19, 415, 424, 916, 988, 1109
MfeI	CAATTG	1 cut(s)	628
MflI	RGATCY	3 cut(s)	424, 916, 1109
MhlI	GDGCHC	2 cut(s)	291, 804
MluCI	AATT	2 cut(s)	603, 628
MmeI	TCCRAC	3 cut(s)	525, 823, 879
MnlI	CCTC	9 cut(s)	52, 91, 125, 359, 487, 651, 781, 832, 879
MroXI	GAANNNNTTC	1 cut(s)	612
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	3 cut(s)	296, 540, 1188
MunI	CAATTG	1 cut(s)	628
Mva1269I	GAATGC	2 cut(s)	259, 1048
MvaI	CCWGG	2 cut(s)	540, 1188
MwoI	GCNNNNNNNGC	1 cut(s)	286
NciI	CCSGG	1 cut(s)	296
NcoI	CCATGG	1 cut(s)	335
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	6 cut(s)	19, 415, 424, 916, 988, 1109
NlaIII	CATG	4 cut(s)	274, 339, 986, 1183
NlaIV	GGNNCC	2 cut(s)	426, 537
NmeAIII	GCCGAG	1 cut(s)	136
NmuCI	GTSAC	3 cut(s)	101, 551, 565
PagI	TCATGA	1 cut(s)	982
PceI	AGGCCT	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	3 cut(s)	106, 415, 595
PctI	GAATGC	2 cut(s)	259, 1048
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	2 cut(s)	218, 752
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	2 cut(s)	967, 1185
Psp124BI	GAGCTC	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	538, 1186
PspFI	CCCAGC	1 cut(s)	968
PspGI	CCWGG	2 cut(s)	538, 1186
PspN4I	GGNNCC	2 cut(s)	426, 537
PspPI	GGNCC	2 cut(s)	25, 888
PsuI	RGATCY	3 cut(s)	424, 916, 1109
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
SacI	GAGCTC	1 cut(s)	291
SatI	GCNGC	2 cut(s)	966, 1184
Sau3AI	GATC	6 cut(s)	19, 415, 424, 916, 988, 1109
Sau96I	GGNCC	2 cut(s)	25, 888
ScrFI	CCNGG	3 cut(s)	296, 540, 1188
SduI	GDGCHC	2 cut(s)	291, 804
SfaNI	GCATC	3 cut(s)	3, 731, 1042
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
SpeI	ACTAGT	1 cut(s)	743
Sse9I	AATT	2 cut(s)	603, 628
SseBI	AGGCCT	1 cut(s)	348
SsiI	CCGC	2 cut(s)	87, 1183
SspI	AATATT	1 cut(s)	1120
SspMI	CTAG	3 cut(s)	281, 300, 744
SstI	GAGCTC	1 cut(s)	291
StuI	AGGCCT	1 cut(s)	348
StyD4I	CCNGG	3 cut(s)	294, 538, 1186
StyI	CCWWGG	1 cut(s)	335
TaaI	ACNGT	4 cut(s)	110, 612, 864, 897
TaiI	ACGT	1 cut(s)	783
TaqI	TCGA	1 cut(s)	418
TasI	AATT	2 cut(s)	603, 628
TauI	GCSGC	1 cut(s)	1186
TfiI	GAWTC	2 cut(s)	218, 752
TscAI	CASTG	2 cut(s)	43, 570
TseFI	GTSAC	3 cut(s)	101, 551, 565
TseI	GCWGC	1 cut(s)	965
Tsp45I	GTSAC	3 cut(s)	101, 551, 565
TspDTI	ATGAA	6 cut(s)	152, 203, 259, 588, 744, 971
TspGWI	ACGGA	4 cut(s)	58, 215, 219, 721
TspRI	CASTG	2 cut(s)	43, 570
Van91I	CCANNNNNTGG	1 cut(s)	271
XmnI	GAANNNNTTC	1 cut(s)	612
XspI	CTAG	3 cut(s)	281, 300, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.