Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007996

Physical Location & Seq

Genomic Coordinates Reverse (-)

9245649 .. 9251647

Gene Structure 5999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00340770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGTTGTGAGTCAGCGTGGAAGTGTGGAGGAGAGGAAGGCGGTTGCGTGGAGGTGGGACTGTATGGGGAAAAAGATGAAGAATAAAACGGACAGGGAGACGATTGATTCTAATCCGATTATTGATTTGAAGTCTATTATCCATCAGCATTCCCAGTTCATGGACAAGCTAGTGGAGCTCATCCCGGCTAGGTTCTATTTACCCAATGACGACGACGAGAAGCCATGGTTTCAAGGCCTCAGCAACCCTGCGAAAGCTTCAGCTAAGAAGGAAACGAAGAAAAACATCAAGAAAGCTCGCAGAGATCGATTGGATCCAGAGAAGACTTCCACAACAACCCTTGATTTGCTAAAGCAAAGTTTGGAAAAGGAGAAGTCGAATGAGGATGAGAGTGATAGCGGTGAAATGGAGACTAAACCTGTGGTGCCTGGGCTGGAAGGTGACGACAGGTCAGTGACATATGAAGAGCTCCAGCAACGGCTTCGTCGTAAAATTGAACAGTTTCAGTCTGGGCGCAATTGTGGAGTTTCAGAGAGAGCAAGGAAGAGGAGTGAAAGGAAGGAGAGATATGAGAAAGGAGCTGATGACAGGAAACGGAAGAGAGAAACTGCATCTGATGAAAAGAAACCTACTAGTAGTGATTCGGTGGACAAGAAAGTTGAAGAAGACGTTGCAGAGGCTTCTAAAGGGCTCACATTCAGTCGTGTCAAACTTGGGGGTGATGATGAGGTTGGAAAGAAGAAGAGAAGACTGTCAAAGGCGAAGGAGCTTGAGAGGGCCAAACAGTTGGAAGAAGTGAAGAAAGATCCAGAGAAAGGTAAGTCTCTCTTGTGGAAAACAGCAACCAGTAGAGCTGCTGGGGTTAAGGTTCATGATGATCCAAAGTTGCTGAAACAAAGCATAAAAAAGGAGAACAAGAAGCATCAGAAGAATGCTGAGAAATGGAAGGAAAGGGTTGAAACCACACACAAGTTGAAAGCAGACAAACAGAAGAAGAGATCTGATAATATTTCAGCAAAACTAGACGAGAAGAAAAAGCGCAAAATCGCAAAGAGAGAGAAGAAACTCATGCGGCCAGGATTTGAAGGTCGCAAAGAAGGTTATGTCAATGAGGGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRP14 SURF6

Protein Analysis

373

Amino Acids

43.13

Weight (kDa)

9.76

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRP14	PF15459	47 - 107	1.4e-20	60S ribosome biogenesis protein Rrp14
SURF6	PF04935	178 - 348	1.2e-19	Surfeit locus protein 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05210 AT5G05210
fragaria_vesca	FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_4g05060 FvH4_4g05060
malus_domestica	MD13G1224300.v1.1 MD16G1229100.v1.1
prunus_persica	Prupe.1G051000_v2.0.a1
pyrus_communis	pycom13g19810
rosa_chinensis	RchiOBHm_Chr4g0395981
rosa_laevigata	RLG00000009583
rosa_multiflora	Rmu_sc0001103.1_g000003
rosa_roxburghii	Rroxscaffold_5G00340770
rosa_rugosa	Rorug03G0353000
rosa_samantha	Rh4AG064400 Rh4AG066200 Rh4BG063100 Rh4CG069500 Rh4DG059600
rosa_wichuraiana	Rw4G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	424
AccB7I	CCANNNNNTGG	1 cut(s)	160
AciI	CCGC	3 cut(s)	41, 399, 1072
AclWI	GGATC	4 cut(s)	308, 321, 800, 872
AcoI	YGGCCR	1 cut(s)	1073
AcuI	CTGAAG	1 cut(s)	243
AfiI	CCNNNNNNNGG	2 cut(s)	160, 815
AgsI	TTSAA	7 cut(s)	130, 233, 497, 662, 959, 976, 1085
AhdI	GACNNNNNGTC	1 cut(s)	448
AhlI	ACTAGT	1 cut(s)	632
AjnI	CCWGG	2 cut(s)	427, 1075
AluBI	AGCT	9 cut(s)	169, 178, 257, 263, 296, 469, 581, 769, 854
AluI	AGCT	9 cut(s)	169, 178, 257, 263, 296, 469, 581, 769, 854
Alw21I	GWGCWC	2 cut(s)	180, 471
Alw26I	GTCTC	3 cut(s)	92, 404, 828
AlwI	GGATC	4 cut(s)	308, 321, 800, 872
AoxI	GGCC	3 cut(s)	235, 777, 1073
ApeKI	GCWGC	1 cut(s)	854
Asp700I	GAANNNNTTC	1 cut(s)	501
AspLEI	GCGC	2 cut(s)	516, 1041
AspS9I	GGNCC	1 cut(s)	777
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	3 cut(s)	413, 452, 731
BamHI	GGATCC	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	424
BanII	GRGCYC	3 cut(s)	180, 471, 693
BbsI	GAAGAC	3 cut(s)	329, 672, 754
Bbv12I	GWGCWC	2 cut(s)	180, 471
BbvCI	CCTCAGC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	841
BccI	CCATC	1 cut(s)	150
BceAI	ACGGC	1 cut(s)	494
BcgI	CGANNNNNNTGC	2 cut(s)	464, 498
BciT130I	CCWGG	2 cut(s)	429, 1077
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	3 cut(s)	92, 404, 828
BcuI	ACTAGT	1 cut(s)	632
BfaI	CTAG	4 cut(s)	170, 189, 633, 1022
BglII	AGATCT	1 cut(s)	998
BisI	GCNGC	2 cut(s)	855, 1073
BlsI	GCNGC	2 cut(s)	856, 1074
Bme1390I	CCNGG	3 cut(s)	185, 429, 1077
BmeRI	GACNNNNNGTC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	777
BmiI	GGNNCC	2 cut(s)	315, 426
BmrFI	CCNGG	3 cut(s)	185, 429, 1077
BmrI	ACTGGG	1 cut(s)	148
BmsI	GCATC	2 cut(s)	620, 931
BmuI	ACTGGG	1 cut(s)	148
BpiI	GAAGAC	3 cut(s)	329, 672, 754
BpmI	CTGGAG	1 cut(s)	455
Bpu10I	CCTNAGC	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	791
BpuMI	CCSGG	1 cut(s)	185
Bsa29I	ATCGAT	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	224, 428
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 815
Bse1I	ACTGG	2 cut(s)	154, 846
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	429, 1077
BseCI	ATCGAT	1 cut(s)	307
BseDI	CCNNGG	2 cut(s)	224, 428
BseGI	GGATG	2 cut(s)	180, 391
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	160, 815
BseMII	CTCAG	2 cut(s)	253, 927
BseNI	ACTGG	2 cut(s)	154, 846
BseRI	GAGGAG	2 cut(s)	44, 562
BseXI	GCAGC	1 cut(s)	841
BseYI	CCCAGC	1 cut(s)	857
BshFI	GGCC	3 cut(s)	237, 779, 1075
BshNI	GGYRCC	1 cut(s)	424
BshVI	ATCGAT	1 cut(s)	307
BsiHKAI	GWGCWC	2 cut(s)	180, 471
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	160, 815
BsmAI	GTCTC	3 cut(s)	92, 404, 828
BsmBI	CGTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	71
BsmI	GAATGC	2 cut(s)	148, 937
BsnI	GGCC	3 cut(s)	237, 779, 1075
Bsp1286I	GDGCHC	3 cut(s)	180, 471, 693
Bsp143I	GATC	5 cut(s)	304, 313, 805, 877, 998
Bsp19I	CCATGG	1 cut(s)	224
BspACI	CCGC	3 cut(s)	41, 399, 1072
BspANI	GGCC	3 cut(s)	237, 779, 1075
BspCNI	CTCAG	2 cut(s)	252, 928
BspDI	ATCGAT	1 cut(s)	307
BspHI	TCATGA	1 cut(s)	871
BspLI	GGNNCC	2 cut(s)	315, 426
BspPI	GGATC	4 cut(s)	308, 321, 800, 872
BspQI	GCTCTTC	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	424
BsrI	ACTGG	2 cut(s)	154, 846
BssECI	CCNNGG	2 cut(s)	224, 428
BssMI	GATC	5 cut(s)	304, 313, 805, 877, 998
BssT1I	CCWWGG	1 cut(s)	224
Bst2UI	CCWGG	2 cut(s)	429, 1077
Bst4CI	ACNGT	4 cut(s)	62, 501, 753, 786
Bst6I	CTCTTC	5 cut(s)	459, 539, 593, 737, 989
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	3 cut(s)	239, 264, 936
BstDSI	CCRYGG	1 cut(s)	224
BstF5I	GGATG	2 cut(s)	180, 391
BstHHI	GCGC	2 cut(s)	516, 1041
BstKTI	GATC	5 cut(s)	307, 316, 808, 880, 1001
BstMAI	GTCTC	3 cut(s)	92, 404, 828
BstMBI	GATC	5 cut(s)	304, 313, 805, 877, 998
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNI	CCWGG	2 cut(s)	429, 1077
BstSCI	CCNGG	3 cut(s)	183, 427, 1075
BstV1I	GCAGC	1 cut(s)	841
BstV2I	GAAGAC	3 cut(s)	329, 672, 754
BstX2I	RGATCY	3 cut(s)	313, 805, 998
BstXI	CCANNNNNNTGG	1 cut(s)	787
BstYI	RGATCY	3 cut(s)	313, 805, 998
Bsu15I	ATCGAT	1 cut(s)	307
BsuRI	GGCC	3 cut(s)	237, 779, 1075
BsuTUI	ATCGAT	1 cut(s)	307
BtgI	CCRYGG	1 cut(s)	224
BtsCI	GGATG	2 cut(s)	180, 391
BtsIMutI	CAGTG	1 cut(s)	459
Cac8I	GCNNGC	1 cut(s)	298
CciI	TCATGA	1 cut(s)	871
CfoI	GCGC	2 cut(s)	516, 1041
Cfr13I	GGNCC	1 cut(s)	777
ClaI	ATCGAT	1 cut(s)	307
CviAII	CATG	4 cut(s)	160, 225, 872, 1069
DdeI	CTNAG	3 cut(s)	239, 264, 936
DpnI	GATC	5 cut(s)	306, 315, 807, 879, 1000
DpnII	GATC	5 cut(s)	304, 313, 805, 877, 998
DriI	GACNNNNNGTC	1 cut(s)	448
EaeI	YGGCCR	1 cut(s)	1073
Eam1104I	CTCTTC	5 cut(s)	459, 539, 593, 737, 989
Eam1105I	GACNNNNNGTC	1 cut(s)	448
EarI	CTCTTC	5 cut(s)	459, 539, 593, 737, 989
Ecl136II	GAGCTC	2 cut(s)	178, 469
Eco130I	CCWWGG	1 cut(s)	224
Eco147I	AGGCCT	1 cut(s)	237
Eco24I	GRGCYC	3 cut(s)	180, 471, 693
Eco53kI	GAGCTC	2 cut(s)	178, 469
Eco57I	CTGAAG	1 cut(s)	243
EcoICRI	GAGCTC	2 cut(s)	178, 469
EcoRII	CCWGG	2 cut(s)	427, 1075
EcoT14I	CCWWGG	1 cut(s)	224
EcoT38I	GRGCYC	3 cut(s)	180, 471, 693
ErhI	CCWWGG	1 cut(s)	224
Esp3I	CGTCTC	1 cut(s)	92
FaeI	CATG	4 cut(s)	163, 228, 875, 1072
FalI	AAGNNNNNCTT	2 cut(s)	812, 844
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	4 cut(s)	159, 224, 871, 1068
FauNDI	CATATG	1 cut(s)	460
Fnu4HI	GCNGC	2 cut(s)	855, 1073
FokI	GGATG	2 cut(s)	167, 398
FriOI	GRGCYC	3 cut(s)	180, 471, 693
Fsp4HI	GCNGC	2 cut(s)	855, 1073
FspBI	CTAG	4 cut(s)	170, 189, 633, 1022
GlaI	GCGC	2 cut(s)	515, 1040
GluI	GCNGC	2 cut(s)	855, 1073
GsaI	CCCAGC	1 cut(s)	861
GsuI	CTGGAG	1 cut(s)	455
HaeIII	GGCC	3 cut(s)	237, 779, 1075
HapII	CCGG	1 cut(s)	185
HhaI	GCGC	2 cut(s)	516, 1041
Hin1II	CATG	4 cut(s)	163, 228, 875, 1072
Hin6I	GCGC	2 cut(s)	514, 1039
HinP1I	GCGC	2 cut(s)	514, 1039
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	3 cut(s)	10, 107, 641
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	3 cut(s)	413, 452, 731
Hpy166II	GTNNAC	1 cut(s)	649
Hpy188I	TCNGA	5 cut(s)	117, 532, 616, 927, 1003
Hpy188III	TCNNGA	4 cut(s)	289, 317, 809, 872
Hpy8I	GTNNAC	1 cut(s)	649
Hpy99I	CGWCG	3 cut(s)	215, 218, 489
HpyAV	CCTTC	8 cut(s)	31, 262, 431, 553, 757, 940, 1079, 1091
HpyCH4III	ACNGT	4 cut(s)	62, 501, 753, 786
HpyCH4IV	ACGT	1 cut(s)	669
HpyCH4V	TGCA	3 cut(s)	611, 674, 1118
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	3 cut(s)	239, 264, 936
HpySE526I	ACGT	1 cut(s)	669
Hsp92II	CATG	4 cut(s)	163, 228, 875, 1072
HspAI	GCGC	2 cut(s)	514, 1039
Kzo9I	GATC	5 cut(s)	304, 313, 805, 877, 998
LguI	GCTCTTC	1 cut(s)	459
LmnI	GCTCC	4 cut(s)	175, 474, 578, 766
Lsp1109I	GCAGC	1 cut(s)	841
LweI	GCATC	2 cut(s)	620, 931
MaeI	CTAG	4 cut(s)	170, 189, 633, 1022
MaeII	ACGT	1 cut(s)	669
MaeIII	GTNAC	2 cut(s)	440, 454
MalI	GATC	5 cut(s)	306, 315, 807, 879, 1000
MboI	GATC	5 cut(s)	304, 313, 805, 877, 998
MfeI	CAATTG	1 cut(s)	517
MflI	RGATCY	3 cut(s)	313, 805, 998
MhlI	GDGCHC	3 cut(s)	180, 471, 693
MluCI	AATT	2 cut(s)	492, 517
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	2 cut(s)	712, 768
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	1 cut(s)	864
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	3 cut(s)	185, 429, 1077
MunI	CAATTG	1 cut(s)	517
Mva1269I	GAATGC	2 cut(s)	148, 937
MvaI	CCWGG	2 cut(s)	429, 1077
MwoI	GCNNNNNNNGC	1 cut(s)	175
NciI	CCSGG	1 cut(s)	185
NcoI	CCATGG	1 cut(s)	224
NdeI	CATATG	1 cut(s)	460
NdeII	GATC	5 cut(s)	304, 313, 805, 877, 998
NlaIII	CATG	4 cut(s)	163, 228, 875, 1072
NlaIV	GGNNCC	2 cut(s)	315, 426
NmuCI	GTSAC	2 cut(s)	440, 454
PagI	TCATGA	1 cut(s)	871
PceI	AGGCCT	1 cut(s)	237
PciSI	GCTCTTC	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	2 cut(s)	304, 484
PctI	GAATGC	2 cut(s)	148, 937
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	107, 641
PflMI	CCANNNNNTGG	1 cut(s)	160
PkrI	GCNGC	2 cut(s)	856, 1074
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
Psp124BI	GAGCTC	2 cut(s)	180, 471
Psp6I	CCWGG	2 cut(s)	427, 1075
PspFI	CCCAGC	1 cut(s)	857
PspGI	CCWGG	2 cut(s)	427, 1075
PspN4I	GGNNCC	2 cut(s)	315, 426
PspPI	GGNCC	1 cut(s)	777
PsuI	RGATCY	3 cut(s)	313, 805, 998
SacI	GAGCTC	2 cut(s)	180, 471
SapI	GCTCTTC	1 cut(s)	459
SaqAI	TTAA	1 cut(s)	864
SatI	GCNGC	2 cut(s)	855, 1073
Sau3AI	GATC	5 cut(s)	304, 313, 805, 877, 998
Sau96I	GGNCC	1 cut(s)	777
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	3 cut(s)	185, 429, 1077
SduI	GDGCHC	3 cut(s)	180, 471, 693
SfaNI	GCATC	2 cut(s)	620, 931
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
SpeI	ACTAGT	1 cut(s)	632
Sse9I	AATT	2 cut(s)	492, 517
SseBI	AGGCCT	1 cut(s)	237
SsiI	CCGC	3 cut(s)	41, 399, 1072
SspI	AATATT	1 cut(s)	1009
SspMI	CTAG	4 cut(s)	170, 189, 633, 1022
SstI	GAGCTC	2 cut(s)	180, 471
StuI	AGGCCT	1 cut(s)	237
StyD4I	CCNGG	3 cut(s)	183, 427, 1075
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	4 cut(s)	62, 501, 753, 786
TaiI	ACGT	1 cut(s)	672
TaqI	TCGA	2 cut(s)	307, 377
TasI	AATT	2 cut(s)	492, 517
TauI	GCSGC	1 cut(s)	1075
TfiI	GAWTC	2 cut(s)	107, 641
Tru1I	TTAA	1 cut(s)	864
Tru9I	TTAA	1 cut(s)	864
TscAI	CASTG	1 cut(s)	459
TseFI	GTSAC	2 cut(s)	440, 454
TseI	GCWGC	1 cut(s)	854
Tsp45I	GTSAC	2 cut(s)	440, 454
TspDTI	ATGAA	5 cut(s)	92, 148, 477, 633, 860
TspGWI	ACGGA	2 cut(s)	104, 610
TspRI	CASTG	1 cut(s)	459
Van91I	CCANNNNNTGG	1 cut(s)	160
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	4 cut(s)	170, 189, 633, 1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.