Prupe.1G051000_v2.0.a1

Surfeit locus protein 6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0007996
Physical Location & Seq
Reverse (-)
3578105 .. 3580638
2534 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G051000.1

Sequence Viewer

Length: 1047 bp
ATGAAGAAGAAGAGGGCAAGTCATGCCATCCATTCCAAACCAGTTCTGGATCTGAAGTCTATTATTCATCAGAATTCTCAGTTCTTCGACAAGTTAGTTGAGCTCATCCCTGCCAGGTTCTATCTACCCATTGACGATGATGAGAAGCCGTGGTTTCAGGGTCTCAGCAAGTCTGCCAAAGCTTCAGCAAAGAAGGAATCAAAGGAAAACATTAAGAAAGCTCGAAGACAACGATTGGATCCAGAGAAGTCTTCTACGACAACCCTTGATTTGCTAAAACAAAGTTTGGAAAAGAAGTCAAGTGATGAGAGTGACAGTGATGAAATAGAGGTTAAACCTGTGGTGGCTGGTCTAGAAGATGATGACCGGTCAGTGACATATGAAGAACTCCAGCATCGTCTTCGTTGTAAGATAGAGGAGTTTCGGGCTGGTCGGCATTGTGATGGTTCAGAGAGAGCAAGGAAGAGGATCGAGAGACATGAGAGATATGAGAAGAAAGGAGCTGACCCGAAGAAACGGAAGAGAGAAACTGCATCTGATGGAAAGAAATCTACTAGTGATGATTCAGTGAGGAAAGATGCTGACGAGGCTTCGAAGGAGCTCACATTCGGTCATGTCAAACTTGGGAATGAAGATGAGCTGGGGAAGAAGAATAAGAAGAGAAAATTGTCAAAGTTGCAGGAGCTTGAGAGGGCAAAACAGTTGGAAGAAGCCAAGAAAGATCCCGAGAAAGGTGAGATAATCGCAAAGAAGCATTCTTGGAAAGCAGCAACAAGTAGAGCTGCTGGGATCAAGGTTCACGATGATCCGAAGTTGTTGAAACAAAGCCTTCACAAGGAGAAGAAGAAGCACCAGAAGAATGCCGAGAAGTGGAAGGGAAGGGTTGAAACCACAGAGAAGATGAAAGCAGACAAACAGAAGAAGAGATCAGATAACATATCACAGAAGAAGCAAGAGAAGAAAATGCGGAAGATTGCGAAAAGAGAGAAAAAACTCATGCGGCCAGGTTTTGAAGGTCGCAAAGAAGGTTTTATCACTCAAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRP14 SURF6

Protein Analysis

349

Amino Acids

40.32

Weight (kDa)

9.84

Isoelectric Point (pI)

49.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 967, 1000
AclWI GGATC 7 cut(s) 57, 233, 246, 476, 716, 797, 800
AcoI YGGCCR 1 cut(s) 1001
AcsI RAATTY 1 cut(s) 73
AcuI CTGAAG 2 cut(s) 74, 168
AfiI CCNNNNNNNGG 3 cut(s) 731, 835, 870
AgeI ACCGGT 1 cut(s) 366
AgsI TTSAA 3 cut(s) 820, 887, 1013
AhlI ACTAGT 1 cut(s) 554
AjnI CCWGG 2 cut(s) 113, 1003
AluBI AGCT 8 cut(s) 103, 182, 221, 503, 601, 640, 685, 782
AluI AGCT 8 cut(s) 103, 182, 221, 503, 601, 640, 685, 782
Alw21I GWGCWC 2 cut(s) 105, 603
Alw26I GTCTC 2 cut(s) 167, 469
AlwI GGATC 7 cut(s) 57, 233, 246, 476, 716, 797, 800
Ama87I CYCGRG 1 cut(s) 725
AoxI GGCC 1 cut(s) 1001
ApeKI GCWGC 2 cut(s) 767, 782
ApoI RAATTY 1 cut(s) 73
AsiGI ACCGGT 1 cut(s) 366
AsuHPI GGTGA 1 cut(s) 746
AsuII TTCGAA 1 cut(s) 593
AvaI CYCGRG 1 cut(s) 725
BamHI GGATCC 1 cut(s) 238
BanII GRGCYC 2 cut(s) 105, 603
BbsI GAAGAC 3 cut(s) 232, 243, 392
Bbv12I GWGCWC 2 cut(s) 105, 603
BbvI GCAGC 2 cut(s) 769, 779
BccI CCATC 3 cut(s) 35, 437, 533
BceAI ACGGC 1 cut(s) 133
BcgI CGANNNNNNTGC 2 cut(s) 383, 417
BciT130I CCWGG 2 cut(s) 115, 1005
BcoDI GTCTC 2 cut(s) 167, 469
BcuI ACTAGT 1 cut(s) 554
BfaI CTAG 2 cut(s) 353, 555
BisI GCNGC 3 cut(s) 768, 783, 1001
BlsI GCNGC 3 cut(s) 769, 784, 1002
Bme1390I CCNGG 2 cut(s) 115, 1005
BmeT110I CYCGRG 1 cut(s) 725
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 2 cut(s) 115, 1005
BmsI GCATC 3 cut(s) 403, 542, 568
BpiI GAAGAC 3 cut(s) 232, 243, 392
BpmI CTGGAG 1 cut(s) 374
Bpu14I TTCGAA 1 cut(s) 593
BpuEI CTTGAG 2 cut(s) 707, 1023
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 149
BsaWI WCCGGW 1 cut(s) 366
Bsc4I CCNNNNNNNGG 3 cut(s) 731, 835, 870
Bse118I RCCGGY 1 cut(s) 366
Bse1I ACTGG 1 cut(s) 41
BseBI CCWGG 2 cut(s) 115, 1005
BseDI CCNNGG 1 cut(s) 149
BseGI GGATG 2 cut(s) 27, 105
BseLI CCNNNNNNNGG 3 cut(s) 731, 835, 870
BseMII CTCAG 2 cut(s) 92, 178
BseNI ACTGG 1 cut(s) 41
BseRI GAGGAG 1 cut(s) 431
BseXI GCAGC 2 cut(s) 769, 779
BseYI CCCAGC 2 cut(s) 640, 785
BshFI GGCC 1 cut(s) 1003
BshTI ACCGGT 1 cut(s) 366
BsiHKAI GWGCWC 2 cut(s) 105, 603
BsiHKCI CYCGRG 1 cut(s) 725
BsiSI CCGG 1 cut(s) 367
BslI CCNNNNNNNGG 3 cut(s) 731, 835, 870
BsmAI GTCTC 2 cut(s) 167, 469
BsmI GAATGC 2 cut(s) 754, 865
BsnI GGCC 1 cut(s) 1003
Bso31I GGTCTC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 725
Bsp119I TTCGAA 1 cut(s) 593
Bsp1286I GDGCHC 2 cut(s) 105, 603
Bsp143I GATC 7 cut(s) 49, 238, 468, 721, 789, 805, 926
BspACI CCGC 2 cut(s) 967, 1000
BspANI GGCC 1 cut(s) 1003
BspCNI CTCAG 2 cut(s) 91, 177
BspLI GGNNCC 1 cut(s) 240
BspPI GGATC 7 cut(s) 57, 233, 246, 476, 716, 797, 800
BspT104I TTCGAA 1 cut(s) 593
BspTNI GGTCTC 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 366
BsrI ACTGG 1 cut(s) 41
BssAI RCCGGY 1 cut(s) 366
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 7 cut(s) 49, 238, 468, 721, 789, 805, 926
Bst2UI CCWGG 2 cut(s) 115, 1005
Bst4CI ACNGT 2 cut(s) 317, 702
Bst6I CTCTTC 5 cut(s) 5, 458, 515, 653, 917
BstAPI GCANNNNNTGC 1 cut(s) 23
BstBI TTCGAA 1 cut(s) 593
BstDEI CTNAG 2 cut(s) 78, 164
BstDSI CCRYGG 1 cut(s) 149
BstENI CCTNNNNNAGG 1 cut(s) 833
BstF5I GGATG 2 cut(s) 27, 105
BstKTI GATC 7 cut(s) 52, 241, 471, 724, 792, 808, 929
BstMAI GTCTC 2 cut(s) 167, 469
BstMBI GATC 7 cut(s) 49, 238, 468, 721, 789, 805, 926
BstMWI GCNNNNNNNGC 2 cut(s) 23, 587
BstNI CCWGG 2 cut(s) 115, 1005
BstSCI CCNGG 2 cut(s) 113, 1003
BstV1I GCAGC 2 cut(s) 769, 779
BstV2I GAAGAC 3 cut(s) 232, 243, 392
BstX2I RGATCY 3 cut(s) 49, 238, 721
BstYI RGATCY 3 cut(s) 49, 238, 721
BsuRI GGCC 1 cut(s) 1003
BtgI CCRYGG 1 cut(s) 149
BtsCI GGATG 2 cut(s) 27, 105
BtsIMutI CAGTG 3 cut(s) 322, 378, 573
Cfr10I RCCGGY 1 cut(s) 366
CspAI ACCGGT 1 cut(s) 366
CviAII CATG 4 cut(s) 23, 479, 614, 997
DdeI CTNAG 2 cut(s) 78, 164
DpnI GATC 7 cut(s) 51, 240, 470, 723, 791, 807, 928
DpnII GATC 7 cut(s) 49, 238, 468, 721, 789, 805, 926
EaeI YGGCCR 1 cut(s) 1001
Eam1104I CTCTTC 5 cut(s) 5, 458, 515, 653, 917
EarI CTCTTC 5 cut(s) 5, 458, 515, 653, 917
Ecl136II GAGCTC 2 cut(s) 103, 601
Eco24I GRGCYC 2 cut(s) 105, 603
Eco31I GGTCTC 1 cut(s) 167
Eco53kI GAGCTC 2 cut(s) 103, 601
Eco57I CTGAAG 2 cut(s) 74, 168
Eco88I CYCGRG 1 cut(s) 725
EcoICRI GAGCTC 2 cut(s) 103, 601
EcoNI CCTNNNNNAGG 1 cut(s) 833
EcoRI GAATTC 1 cut(s) 73
EcoRII CCWGG 2 cut(s) 113, 1003
EcoT38I GRGCYC 2 cut(s) 105, 603
FaeI CATG 4 cut(s) 26, 482, 617, 1000
FaiI YATR 8 cut(s) 24, 379, 381, 480, 489, 615, 938, 998
FatI CATG 4 cut(s) 22, 478, 613, 996
FauNDI CATATG 1 cut(s) 379
Fnu4HI GCNGC 3 cut(s) 768, 783, 1001
FokI GGATG 2 cut(s) 14, 92
FriOI GRGCYC 2 cut(s) 105, 603
Fsp4HI GCNGC 3 cut(s) 768, 783, 1001
FspBI CTAG 2 cut(s) 353, 555
GluI GCNGC 3 cut(s) 768, 783, 1001
GsaI CCCAGC 2 cut(s) 644, 789
GsuI CTGGAG 1 cut(s) 374
HaeIII GGCC 1 cut(s) 1003
HapII CCGG 1 cut(s) 367
Hin1II CATG 4 cut(s) 26, 482, 617, 1000
HindIII AAGCTT 1 cut(s) 180
HinfI GANTC 2 cut(s) 197, 563
HpaII CCGG 1 cut(s) 367
HphI GGTGA 1 cut(s) 746
Hpy166II GTNNAC 1 cut(s) 799
Hpy188I TCNGA 6 cut(s) 54, 72, 451, 538, 810, 931
Hpy188III TCNNGA 6 cut(s) 47, 242, 353, 472, 725, 800
Hpy8I GTNNAC 1 cut(s) 799
HpyAV CCTTC 7 cut(s) 187, 589, 839, 868, 873, 1007, 1019
HpyCH4III ACNGT 2 cut(s) 317, 702
HpyCH4V TGCA 2 cut(s) 533, 679
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 587
HpyF3I CTNAG 2 cut(s) 78, 164
Hsp92II CATG 4 cut(s) 26, 482, 617, 1000
Kzo9I GATC 7 cut(s) 49, 238, 468, 721, 789, 805, 926
LmnI GCTCC 3 cut(s) 500, 598, 682
Lsp1109I GCAGC 2 cut(s) 769, 779
LweI GCATC 3 cut(s) 403, 542, 568
MaeI CTAG 2 cut(s) 353, 555
MaeIII GTNAC 2 cut(s) 311, 373
MalI GATC 7 cut(s) 51, 240, 470, 723, 791, 807, 928
MboI GATC 7 cut(s) 49, 238, 468, 721, 789, 805, 926
MflI RGATCY 3 cut(s) 49, 238, 721
MhlI GDGCHC 2 cut(s) 105, 603
MluCI AATT 2 cut(s) 73, 665
MmeI TCCRAC 1 cut(s) 684
MnlI CCTC 7 cut(s) 6, 322, 409, 459, 564, 580, 684
MseI TTAA 3 cut(s) 213, 333, 1045
MslI CAYNNNNRTG 1 cut(s) 441
MspI CCGG 1 cut(s) 367
MspR9I CCNGG 2 cut(s) 115, 1005
Mva1269I GAATGC 2 cut(s) 754, 865
MvaI CCWGG 2 cut(s) 115, 1005
MwoI GCNNNNNNNGC 2 cut(s) 23, 587
NdeI CATATG 1 cut(s) 379
NdeII GATC 7 cut(s) 49, 238, 468, 721, 789, 805, 926
NlaIII CATG 4 cut(s) 26, 482, 617, 1000
NlaIV GGNNCC 1 cut(s) 240
NmeAIII GCCGAG 1 cut(s) 889
NmuCI GTSAC 2 cut(s) 311, 373
NspV TTCGAA 1 cut(s) 593
PcsI WCGNNNNNNNCGW 1 cut(s) 229
PctI GAATGC 2 cut(s) 754, 865
PfeI GAWTC 2 cut(s) 197, 563
PinAI ACCGGT 1 cut(s) 366
PkrI GCNGC 3 cut(s) 769, 784, 1002
Psp124BI GAGCTC 2 cut(s) 105, 603
Psp6I CCWGG 2 cut(s) 113, 1003
PspFI CCCAGC 2 cut(s) 640, 785
PspGI CCWGG 2 cut(s) 113, 1003
PspN4I GGNNCC 1 cut(s) 240
PsuI RGATCY 3 cut(s) 49, 238, 721
RseI CAYNNNNRTG 1 cut(s) 441
SacI GAGCTC 2 cut(s) 105, 603
SaqAI TTAA 3 cut(s) 213, 333, 1045
SatI GCNGC 3 cut(s) 768, 783, 1001
Sau3AI GATC 7 cut(s) 49, 238, 468, 721, 789, 805, 926
ScrFI CCNGG 2 cut(s) 115, 1005
SduI GDGCHC 2 cut(s) 105, 603
SfaNI GCATC 3 cut(s) 403, 542, 568
SfuI TTCGAA 1 cut(s) 593
SmiMI CAYNNNNRTG 1 cut(s) 441
SmlI CTYRAG 2 cut(s) 686, 1038
SmoI CTYRAG 2 cut(s) 686, 1038
SpeI ACTAGT 1 cut(s) 554
Sse9I AATT 2 cut(s) 73, 665
SsiI CCGC 2 cut(s) 967, 1000
SspMI CTAG 2 cut(s) 353, 555
SstI GAGCTC 2 cut(s) 105, 603
StyD4I CCNGG 2 cut(s) 113, 1003
TaaI ACNGT 2 cut(s) 317, 702
TaqI TCGA 4 cut(s) 87, 223, 471, 593
TaqII GACCGA 1 cut(s) 599
TasI AATT 2 cut(s) 73, 665
TauI GCSGC 1 cut(s) 1003
TfiI GAWTC 2 cut(s) 197, 563
Tru1I TTAA 3 cut(s) 213, 333, 1045
Tru9I TTAA 3 cut(s) 213, 333, 1045
TscAI CASTG 3 cut(s) 322, 378, 573
TseFI GTSAC 2 cut(s) 311, 373
TseI GCWGC 2 cut(s) 767, 782
Tsp45I GTSAC 2 cut(s) 311, 373
TspDTI ATGAA 6 cut(s) 17, 56, 336, 396, 645, 917
TspGWI ACGGA 1 cut(s) 532
TspRI CASTG 3 cut(s) 322, 378, 573
XagI CCTNNNNNAGG 1 cut(s) 833
XapI RAATTY 1 cut(s) 73
XbaI TCTAGA 1 cut(s) 352
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XspI CTAG 2 cut(s) 353, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.